Abstract
Assessing the quality of experiments, both directly and through replication attempts, is becoming a grave concern in biomedicine. This is especially true in omics experiments, where thousands of independent measurements are done in parallel, with the understanding that only a small minority will probe scientifically meaningful effects – a state of affairs conductive to mistaking false positives for scientific discoveries. A currently popular way to deal with false positives in omics is to calculate the Bayesian false-discovery rate (FDR) using, for the prior, the information present in the multitude of parallel measurements of a single omics experiment. To this picture we add a simple method to calculate a retrospective power that is compatible with the FDR. This allows to give a rich account of the quality and potential replicability of the results of almost any omics experiment. As proof of concept we assessed the quality of the 9202 high-throughput sequencing experiments from Entrez GEO database.Poor reproducibility, the inability of reproducing, by using the original data, the original data analysis exactly, and replicability, the inability of reproducing, by new experiments, the original data approximately, have become major concerns in experimental biomedical science. So far reproducibility and replicability issues have been mostly addressed in different studies, making it difficult to prise apart their relative contributions to the quality of an experimental system in the wild {Iqbal:2016es}.
Determining the reproducibility of a study is relatively straightforward – one needs to ascertain that the original data analysis methods are described in sufficient detail and that the original data is obtainable in an analysable form.
Reproducibility of a study merely suggest that the data analysis of the original study was done, if not correctly, at least successfully by following the published plan.
Reproducibility is a minimum requirement for soundness of a study, but does not guarantee it {Bollen:2015wf}.
Neither does a successful replication generate new evidence in favour or a scientific hypothesis {Goodman:2016bo}.
In contrast, a replication study generates new data by the original experimental procedures (although not necessarily the original data analytic methods). Replicability presupposes that we have access to a sufficiently detailed description of the experimental aspects of the study. Unlike a successful reproduction of a study, a successful replication introduces new evidence to science and thus essentially constitutes a form of meta-analysis, which has the potential to change the conclusions of the original study {Goodman:2016bo}. A successful replication is no guarantee for stability of conclusions – indeed, studies that give negative results individually can point to scientifically meaningful effects, when analysed together {Goodman:2016bo}. Moreover, even when presented with identical data there is room for reasonable disagreements about scientific conclusions among people with different interpretations of the scientific context of the problem {Maivali:2015wr}. There are two major hurdles in the replication business: the high cost of actually repeating experiments and a lack of consensus on how to measure replicability, which has led to the presentation of several potentially contradictory measures of replicability, even in the same paper (REF). This makes it desirable to first estimate in silico, which studies are worth replicating in the lab, and how to best replicate them.
To do this efficiently, we will concentrate on a single experimental system: differential expression profiling by RNA sequencing. RNA-seq has several advantages as a model system for studying experimental quality. It is currently a widely used and fast-growing system, suggesting that many new researchers adopt it every year 1. With a typical experiment costing in the range of … it consumes a great deal of public funding.
Nuleotide sequences and associated metadata is stored in three major public repositories – NCBI Sequence Read Archive (SRA), the European Bioinformatics Institute (EBI), and the DNA Database of Japan (DDBJ) that share data under International Nucleotide Sequence Database Collaboration (INSDC).
In contrast to INSDC, NCBI GEO functional genomics database also requires submission of a processed or summary data from which the conclusions in associated manuscripts are based. GEO arranges submission of the uploaded raw data files to SRA. Importantly, processed summary data allows the direct evaluation and reproduction of analysis.
RNA-seq is usually done in a massively parallel way, testing for differential expression between experiment and control conditions of thousands of RNA pairs. This allows to check the quality of each RNA-seq experiment by examining the distribution of the p values that were calculated by the original authors and were used by them to make inferences about differential expression of individual RNAs in their study (REF). Equally importantly, when these p values indicate a technically successful experiment, they can be further used to calculate the false discovery rate (FDR) and the stable retrospective power (SRP), which together enable to analyse the replication potential of the study (REF). This leads to a quality control procedure that works by sequential elimination and first discards the studies that do not describe their methods or deposit data, then the ones whose data (the p values) indicate serious problems with experimental design and/or data analysis, and finally the studies, whose low power suggests scientific irrelevance. Thus we aim to estimate the general quality of the RNA-seq field, determine the quality of individual studies, estimate the efficiency of potential replication studies, propose improvements in the design of these replication studies, and determine, which step of the RNA-seq process would have the greatest gains in terms of the overall health of the field, should improvements be targeted to it.
We believe that the health of a field of science can be best and cheapest gauged by a sequential elimination procedure: (1) estimating the fraction of reproducible publications in it, (2) actually reproducing its analyses, where possible, and checking for signs of failed experimental design and data analyses, (3) from the publications that by reproducibility criteria are worthy of replication attempts, estimating the statistical power of the experimental systems to provide reproducible results in replication studies, as well as the number of true effects left undiscovered in the original study that could be found in the replication study, (4) estimating the magnitude of changes to the experimental protocol (especially to sample size) that would allow high-powered replication studies.
Here we offer an integrated picture of the reproducibility and expected replicability of a modern and popular method of determining differential expression levels of RNAs, namely expression profiling by RNA sequencing.
We set out to assess following checklist for RNA-seq experiments submitted to Entrez GEO database.
Data was queried from NCBI GEO database by using eSearch E-Util with search string “expression profiling by high throughput sequencing[DataSet Type]” using entrezquery R package. GEO UIDs were extracted from query results with xml2 package v1.2.0 (Wickham, Hester, and Ooms 2018). UIDs were used to retrieve GEO document summaries using eSummary E-Util. Metadata was extracted from document summaries using xmlSApply function from XML package v3.98-1.17 (Temple Lang and CRAN Team 2019) and FTPLinks were used to identify supplemental files. We excluded from downloading supplemental files which contained pattern: ‘filelist’ ,‘annotation’ ,‘readme’ ,‘error’ in the file name and we also excluded files with following pattern ‘raw.tar’ ,‘csfasta’ ,‘bam’ ,‘sam’ ,‘bed’ ,‘[:punct:]hic’ ,‘hdf5’ ,‘bismark’ ,‘map’ ,‘barcode’ ,‘peaks’ ,‘tar’ ,‘gtf’ ,‘(big)?bed(.txt|12|graph|pk)?’ ,‘bw’ ,‘wig’ ,‘hic’ ,‘gct(x)?’ ,‘tdf’ ,‘gff(3)?’ ,‘pdf’ ,‘png’ ,‘zip’ ,‘sif’ ,‘narrowpeak’ ,‘fa(sta|stq)?’ ,‘r\(' ,'rda(ta)?\)’ in the file extension. Flat tables were imported into R using fread function from package data.table v1.12.0 (Dowle and Srinivasan 2019). MS Excel xls(x) files were imported using read_excel function from package readxl v1.2.0 (Wickham and Bryan 2018). Compressed xls(x) files were uncompressed before import using gzip. HT-seq experiment metadata was extracted from series matrix files. Supplementary files and series matrix files were downloaded using entrezquery package.
Exact binomial test was used to test differences in proportions. Proportion of true nulls was calculated using propTrueNull function from limma package v3.38.3 (???).
Source code is available in github repo org/reponame.
To assess the quality of high-throughput sequencing datasets we queried the NCBI GEO database for “expression profiling by high throughput sequencing”. Query retrieved 16427 datasets. GEO database shows exponentially growing number of HT-seq data set submissions between 2006 and 2017 (Fig. 1). First HT-seq data set was submitted to GEO database at 2006-09-08. We limited our query for datasets submitted up to the 2017-12-31 to reduce the number of recent incomplete submissions.
Approximately 68% of GEO data sets (11199) contain data from mouse or human origin (Fig. 1, left facet). The 87% (95%CI, 86.3% to 87.6%) of human and mouse data sets are linked to their primary publication. The proportion of datasets with publications is lower when other taxa are used as model organisms 78% (95%CI, 76.7% to 79.0%)(Fig. 1, right facet). As expected, the gap between published GEO series and published articles is bigger for more recent submissions.
For the human and mouse subset, we were able to identify supplementary files for 97% (13120) of GEO series.
The data sets lacking public supplementary files nevertheless show 83% publication rate (95%CI, 79.6% to 86.6%) which is similar to data sets with supplementary files.
Figure 1: Datasets submitted to NCBI GEO database featuring expression profiling by high-throughput sequencing. GEO series submission dynamics and associated publications of HT-seq data. Left facet, submissions featuring human or mouse data, N = 11199. Right facet, submissions of other taxa, N = 5228. Dashed line, GEO series with publications.
We sought to determine the compliance with the formal requirements for GEO data submission (https://www.ncbi.nlm.nih.gov/geo/info/seq.html). This pertains to the reproducibitly of data analysis. GEO archive has three required components: metadata, processed data, and raw data. Minimally these processed files are required to contain raw or normalized sequence read counts, or peak files of ChIP-Seq data. While, in the presence of raw data, supplementary data is not strictly neccessary for reproducibility, reproducing analysis from the raw data requires the reproduction of the full analysis, starting from re-aligning sequences to the genome, which can be practically unfeasible.
Supplementary HT-seq files uplodaded to NCBI GEO contain most commonly raw or processed sequence data files as a ‘RAW.tar’ archive and associated automatically generated ‘filelist.txt’ file (Fig. 2). ‘RAW.tar’ archive contains one file per sample and samples can be directly mapped to metadata by using sample name.
Figure 2: Filename extensions and common stubs of supplementary file names from HT-seq datasets submitted to NCBI GEO database. (A) File extensions of supplementary file names. (B) Common stubs of supplementary file names. Stubs were obtained by removing GEO id from supplementary file names and converting string to lower case. Stubs with N > 10 occurences are shown.
RAW.tar files are included in 59% (7727) of GEO series, whereas only RAW.tar and filelist.txt is present in 47% (6203) GEO series (Fig. 2 and 3).
Figure 3: Submission and publication of GEO series with only RAW.tar and filelist.txt supplementary files.
Other common files contain annotations ‘readme.txt’ and processed data: commonly sequence read counts, gene expression analysis results or ChIP-Seq peak counts.
Sequence read counts can be either as raw read counts or normalised read counts. Gene expression analysis of HT-seq data is commonly performed by fitting models to discrete sequence read count data. Normalised sequence read counts are used for plotting and visual evaluation of the analysis results, but cannot be used to directly reproduce gene expression analysis.
However, tables containing top-ranked genes/features (toptables) from gene expression analysis with complete set of raw P values allow direct evaluation of the data and analysis quality underlying tested hypothesis.
Figure 4: Distribution of supplementary files per GEO Accession before and after filtering supplementary files for download. Left, all supplementary files. Right, supplementary files to be downloaded after filtering for tabular formats. Numbers show total number of files, respectively, before and after filtering.
GEO datasets contain most commonly one to two supplementary files per Accession and up to 269 files per Accession (Fig. 4). To reduce number of files to be downloaded from GEO database, based on file extensions and filenames, we excluded from the dataset files that most plausibly don’t contain final processed data in a tabular format, such as binary files, annotations, raw data, graphics, and other non tabular files. This filter reduced the number of files by 62% (Fig. 4) and GEO series by 53%. Resulting dataset consisted of 12776 files from 6178 GEO series to be downloaded.
Figure 5: Retention of HT-seq GEO series and supplementary files in filter for full sets of p values. Arrows from left to right, (1) GEO sets with supplementary files, (2) filter out RAW.tar and filelist.txt files from supplementary file names, (3) supplementary files with flat table formats that were downloaded, (4) tables with p values. Number of p value sets is the number of sets with >1000 features.
Figure 6: Global view on number of samples and features of HT-seq experiments. (A) Number of features in GEO series where supplementary file with p values was uploaded (dark grey) compared to all GEO series with supplementary files (light grey). (B) Number of samples in GEO series where p values were available (dark grey) compared to all series with supplementary files (light grey). (C) Mean number of samples was 27 and median 8. Most frequent sample size was 6. Mean number of features was 62096 and median 21120.5. Number of samples was taken from series matrix files and number of features is number of rows in supplementary files. Dashed line denotes cutoff for complete sets of features/p values.
Figure 7: Proportion of true null hypotheses in P value sets. (A) Distribution of estimated \(\pi0\) values in reported GEO HT-seq P value sets. (B) Distribution of \(\pi0\) versus number of features. Blue line, loess fit. P value sets with >1000 features are shown.
Figure 8: Journals publishing HT-seq data. (A) Top 20 journals publishing non-human or -mouse datasets. (B) Top 20 journals publishing human or mouse datasets. (C) Top 10 journals publishing articles reporting P values in GEO supplementary files.
Figure 9: Citation of articles featuring HT-seq data. (A) Distribution of the number of citations and availability of full sets of raw P values in GEO database. (B) Relationship between the proportion of true nulls and number of citations. Data with pi0 near zero (< 0.25) were filtered out because these P values are probably not full sets of raw P values. Blue line, linear model fit. Citation data is from Scopus.
Figure 10: Phylogenetic tree of P value histograms. Tree was obtained by clustering of the empirical cumulative distribution function outputs of P value histograms. Colors show groups obtained by cutting the tree at the height giving six clusters.
| Type | n | % |
|---|---|---|
| anti-conservative | 468 | 30.0% |
| bimodal | 300 | 19.3% |
| conservative | 670 | 43.0% |
| other | 56 | 3.6% |
| spiky | 57 | 3.7% |
| uniform | 7 | 0.4% |
| Type | n | % |
|---|---|---|
| anti-conservative | 173 | 79.4% |
| other | 37 | 17.0% |
| spiky | 6 | 2.8% |
| uniform | 2 | 0.9% |
| Type conversion | n | % |
|---|---|---|
| improvement | 56 | 25.7% |
| no improvement | 31 | 14.2% |
| same bad | 14 | 6.4% |
| same good | 117 | 53.7% |
| Accession | Supplementary file name (with p-value set id) | Histogram | Type | pi0 | Histogram after filter | Type after filter | pi0 after filter |
|---|---|---|---|---|---|---|---|
| GSE94840 | GSE94840_Alox5_vs_Control.all.gene.result.txt.gz | other | NA | other | NA | ||
| GSE83664 | GSE83664_NS_M_vs_Input.isoform_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Transcript_Sb_36v48.txt.gz | conservative | NA | NA | NA | NA | |
| GSE89364 | GSE89364_mav_RNASeq_exp_deqiangs.xlsx | conservative | NA | NA | NA | NA | |
| GSE72712 | GSE72712_ESCd_gt70_over_ESCd_40-70.cuffdiff.xlsx-sheet-EST-d_gt70_over_EST-d_40-70 | conservative | NA | NA | NA | NA | |
| GSE77303 | GSE77303_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE73678 | GSE73678_Differential_gene_expression.xlsx.gz | conservative | NA | NA | NA | NA | |
| GSE66652 | GSE66652_AS13-C_differential_expression.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE63748 | GSE63748_exp_7d4h_diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE50156 | GSE50156_nmt1-hsf1_MMThi-_AND_WT_MMThi-.txt.gz | conservative | NA | NA | NA | NA | |
| GSE94587 | GSE94587_DESEQ_Female_WT_vs_Female_del.txt.gz | bimodal | NA | anti-conservative | 0.83 | ||
| GSE83664 | GSE83664_NS_vs_Input.isoform_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Transcript_SbvSv_24.txt.gz | conservative | NA | NA | NA | NA | |
| GSE77471 | GSE77471_RNASEQ_differential_expression.txt.gz | conservative | NA | NA | NA | NA | |
| GSE72712 | GSE72712_ESCd_gt70_over_ESCd_lt40.cuffdiff.xlsx-sheet-EST-d_gt70_over_EST-d_lt40 | conservative | NA | NA | NA | NA | |
| GSE70382 | GSE70382_DESeq_allresp_vs_nonresp.xlsx-sheet-Blad1 | conservative | NA | uniform | NA | ||
| GSE61566 | GSE61566_isoform_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE61733 | GSE61733_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE50156 | GSE50156_ssa2D_AND_WT_24oC.txt.gz | conservative | NA | NA | NA | NA | |
| GSE99397 | GSE99397_CreNeg-MHCPos_vs_Control.CuffDiff.gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE94587 | GSE94587_DESEQ_Male_WT_vs_Female_WT.txt.gz | bimodal | NA | anti-conservative | 0.60 | ||
| GSE90974 | GSE90974_Cuffdiff_Transcript_SbvSv_36.txt.gz | conservative | NA | NA | NA | NA | |
| GSE72712 | GSE72712_ESCd_gt70_over_ESCu.cuffdiff.xlsx-sheet-EST-d_gt70_over_EST-u.cuffdiff | conservative | NA | NA | NA | NA | |
| GSE64687 | GSE64687_FPKM_and_differential_expression_for_mRNA.txt.gz | conservative | NA | NA | NA | NA | |
| GSE66652 | GSE66652_S4-C_differential_expression.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE61690 | GSE61690_DormantvsNondormant_meristems.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE99397 | GSE99397_CreNeg-MHCPos_vs_CrePos-MHCNeg.CuffDiff.gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE94587 | GSE94587_DESEQ_Male_WT_vs_Male_del.txt.gz | bimodal | NA | anti-conservative | 0.80 | ||
| GSE90974 | GSE90974_Cuffdiff_Transcript_SbvSv_48.txt.gz | conservative | NA | NA | NA | NA | |
| GSE72806 | GSE72806_CUFFDIFF_CONTROL_vs_HEAT_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE81522 | GSE81522_N2_vs_ok600_gene_differential_expression_testing.txt.gz | conservative | NA | NA | NA | NA | |
| GSE84450 | GSE84450_WT_UTvsKO_DTT_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE72712 | GSE72712_ESCd_lt40_over_ESCu.cuffdiff.xlsx-sheet-EST-d_lt40_over_EST-u.cuffdiff | conservative | NA | NA | NA | NA | |
| GSE29992 | GSE29992_Het1_KO2_expr.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE99397 | GSE99397_CrePos-MHCNeg_vs_Control.CuffDiff.gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE87626 | GSE87626_nc_vs_19_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Transcript_SbvSv_Global.txt.gz | conservative | NA | NA | NA | NA | |
| GSE75614 | GSE75614_processed_data_mrna-seq_differential_expression.xlsx | conservative | NA | NA | NA | NA | |
| GSE72806 | GSE72806_CUFFDIFF_CONTROL_vs_SALT_HEAT_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE84450 | GSE84450_WT_UTvsKO_UT_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE75787 | GSE75787_gene_exp.diff.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE66445 | GSE66445_M._a.-pES1-MATmcr3_methane_vs._M.a.-pES1-MATmcr3_methanol_GEO_Processed_data.xlsx-sheet-Sheet1 | conservative | NA | NA | NA | NA | |
| GSE63707 | GSE63707_DEXSeqResults_IFMWT_03d_vs_jump_0d.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE61566 | GSE61566_promoters.diff.gz | conservative | NA | NA | NA | NA | |
| GSE85416 | GSE85416_isoform_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Transcript_Sv_24v36.txt.gz | conservative | NA | NA | NA | NA | |
| GSE73321 | GSE73321_FW_VS_BW_expression_diff.txt.gz | other | NA | NA | NA | NA | |
| GSE74886 | GSE74886_processedFPKMS.xlsx | bimodal | NA | NA | NA | NA | |
| GSE72806 | GSE72806_CUFFDIFF_CONTROL_vs_SALT_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE84450 | GSE84450_WT_UTvsWT_DTT_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE68229 | GSE68229_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE64840 | GSE64840_2N_Ts65Dn_MEFs.gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE63707 | GSE63707_DEXSeqResults_IFMWT_03d_vs_leg_0d.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE61566 | GSE61566_splicing.diff.gz | conservative | NA | NA | NA | NA | |
| GSE54602 | GSE54602_D4_D8_D11_D14_isoform_exp.diff.parsed.txt.gz-set-0 | bimodal | NA | NA | NA | NA | |
| GSE54602 | GSE54602_D4_D8_D11_D14_isoform_exp.diff.parsed.txt.gz-set-1 | conservative | NA | NA | NA | NA | |
| GSE54602 | GSE54602_D4_D8_D11_D14_isoform_exp.diff.parsed.txt.gz-set-2 | conservative | NA | NA | NA | NA | |
| GSE43431 | GSE43431_mRNA_STHdh_CUFF_gene_exp.diff.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Transcript_Sv_24v48.txt.gz | conservative | NA | NA | NA | NA | |
| GSE87315 | GSE87315_CuffDiff_RNA-seq.csv.gz | bimodal | NA | NA | NA | NA | |
| GSE84249 | GSE84249_cuffdiff_gene_differential_expression_testing.tab.gz | conservative | NA | NA | NA | NA | |
| GSE84450 | GSE84450_WT_UTvsWT_DTT_splicing.diff.gz | conservative | NA | NA | NA | NA | |
| GSE68229 | GSE68229_isoform_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE70584 | GSE70584_Liberman2015_Wholeroot_CUFFLINKS_gene_exp.txt.gz | conservative | NA | NA | NA | NA | |
| GSE67954 | GSE67954_CSR1_RNAi_DESeq_output.txt.gz | bimodal | NA | other | NA | ||
| GSE63091 | GSE63091_diffana_DESeq_GFP-4A3-Y14_MLN51-UPF1.Ensembl65.tsv.gz-set-0 | conservative | NA | anti-conservative | 0.94 | ||
| GSE63091 | GSE63091_diffana_DESeq_GFP-4A3-Y14_MLN51-UPF1.Ensembl65.tsv.gz-set-1 | conservative | NA | anti-conservative | 0.99 | ||
| GSE63091 | GSE63091_diffana_DESeq_GFP-4A3-Y14_MLN51-UPF1.Ensembl65.tsv.gz-set-2 | conservative | NA | other | NA | ||
| GSE63091 | GSE63091_diffana_DESeq_GFP-4A3-Y14_MLN51-UPF1.Ensembl65.tsv.gz-set-3 | conservative | NA | other | NA | ||
| GSE61566 | GSE61566_tss_group_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE97395 | GSE97395_Treat_vs_control_diff.txt.gz | spiky | NA | anti-conservative | 0.60 | ||
| GSE90974 | GSE90974_Cuffdiff_Transcript_Sv_36v48.txt.gz | conservative | NA | NA | NA | NA | |
| GSE84450 | GSE84450_WT_UTvsX_DTT_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE73289 | GSE73289_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE67954 | GSE67954_P_granule_RNAi_DESeq_output.txt.gz | conservative | NA | other | NA | ||
| GSE48230 | GSE48230_PC3-EMT14-OVOL1_v_PC3-EMT14-OVOL2_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE42443 | GSE42443_Brg1cKO_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE85565 | GSE85565_Result_Table.csv.gz | spiky | NA | anti-conservative | 0.55 | ||
| GSE90974 | GSE90974_Cuffdiff_Transcript_SvvRv_24.txt.gz | conservative | NA | NA | NA | NA | |
| GSE84450 | GSE84450_WT_UTvsX_UT_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE81858 | GSE81858_AA_ABBB_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE70584 | GSE70584_Liberman2015_sorted_CUFFLINKS_gene_exp.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE48230 | GSE48230_PC3-EMT14-OVOL1_v_PC3-EMT14-OVOL2_isoform_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Transcript_SvvRv_36.txt.gz | conservative | NA | NA | NA | NA | |
| GSE76304 | GSE76304_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE70668 | GSE70668_DD_gene_exp.diff.csv.gz | conservative | NA | NA | NA | NA | |
| GSE56013 | GSE56013_A.Wildtype_wholefly_DCVrel.Mock.txt.gz | conservative | NA | NA | NA | NA | |
| GSE48230 | GSE48230_PC3-EMT14_v_PC3-EMT14-OVOL1_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Transcript_SvvRv_48.txt.gz | conservative | NA | NA | NA | NA | |
| GSE64025 | GSE64025_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE68470 | GSE68470_xue_etal_edgeR.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE58053 | GSE58053_1mm-over-0mm.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE56013 | GSE56013_B.G9amutant_wholefly_DCVrel.Mock.txt.gz | conservative | NA | NA | NA | NA | |
| GSE49716 | GSE49716_pei1vspei3_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE49700 | GSE49700_FB_FLM.RNA.txt.gz | other | NA | NA | NA | NA | |
| GSE48230 | GSE48230_PC3-EMT14_v_PC3-EMT14-OVOL1_isoform_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE81437 | GSE81437_polyA_differential_gene_expression.txt.gz | conservative | NA | NA | NA | NA | |
| GSE86442 | GSE86442_gene_differential_expression.txt.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Transcript_SvvRv_Global.txt.gz | conservative | NA | NA | NA | NA | |
| GSE81493 | GSE81493_Differential_gene_expression_analysis.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE56013 | GSE56013_E.Wildtype_fatbody_DCVrel.Mock.txt.gz | conservative | NA | NA | NA | NA | |
| GSE48230 | GSE48230_PC3-EMT14_v_PC3-EMT14-OVOL2_gene_exp.diff.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE36710 | GSE36710_RBFOX1_Splicing_Events.txt.gz | conservative | NA | NA | NA | NA | |
| GSE95679 | GSE95679_Mishima_2017_Dcp2.txt.gz | conservative | NA | NA | NA | NA | |
| GSE56013 | GSE56013_F.G9amutant_fatbody_DCVrel.Mock.txt.gz | conservative | NA | NA | NA | NA | |
| GSE48230 | GSE48230_PC3-EMT14_v_PC3-EMT14-OVOL2_isoform_exp.diff.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE35616 | GSE35616_DESeq.txt.gz | spiky | NA | anti-conservative | 0.87 | ||
| GSE36710 | GSE36710_RBFOX1_Transcriptional_Events.txt.gz | bimodal | NA | anti-conservative | 1.00 | ||
| GSE87862 | GSE87862_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE94120 | GSE94120_K562pos_rel_abundance_1x1.txt.gz | conservative | NA | NA | NA | NA | |
| GSE83717 | GSE83717_FPKMs_pvalue_matrices.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE85442 | GSE85442_cuffdiff.gene_exp_diff.allg.txt.gz | conservative | NA | NA | NA | NA | |
| GSE74220 | GSE74220_Expression_of_Protein_Coding_Genes_in_Control_and_IL1b_treated_human_chondrocytes.txt.gz | conservative | NA | NA | NA | NA | |
| GSE65697 | GSE65697_RNA-seq.csv.gz | bimodal | NA | NA | NA | NA | |
| GSE56013 | GSE56013_I.G9amutant_rel.to_Wildtype_DCV_WholeFly.txt.gz | spiky | NA | NA | NA | NA | |
| GSE63300 | GSE63300_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE58082 | GSE58082_gene_exp.diff.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE49700 | GSE49700_aza.repeats.txt.gz | conservative | NA | NA | NA | NA | |
| GSE49313 | GSE49313_DRRi_GFPi_cds_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE48230 | GSE48230_PC3-EMT14_v_PC3-Epi_gene_exp.diff.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE94120 | GSE94120_SKNSHpos_rel_abundance_1x1.txt.gz | conservative | NA | NA | NA | NA | |
| GSE64641 | GSE64641_leaf_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE85442 | GSE85442_cuffdiff.isoform_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE77902 | GSE77902_WM1976_siRNA1_vs_control.deseq.txt.gz | conservative | NA | anti-conservative | 0.78 | ||
| GSE56013 | GSE56013_J.G9amutant_rel.to_Wildtype_DCV_Fatbody.txt.gz | conservative | NA | NA | NA | NA | |
| GSE59850 | GSE59850_redgrn_early_cuffdiff_out.diff.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE49700 | GSE49700_aza.txt.gz | other | NA | NA | NA | NA | |
| GSE49313 | GSE49313_PhanDRR1.2_PhanGFP_cds_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE48230 | GSE48230_PC3-EMT14_v_PC3-Epi_isoform_exp.diff.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE47399 | GSE47399_diff_exp_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE98869 | GSE98869_diffexp.tsv.gz | spiky | NA | other | NA | ||
| GSE75640 | GSE75640_HR1_vs_control_1_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE94843 | GSE94843_cuffdiff_mock_vs_lox.txt.gz | conservative | NA | NA | NA | NA | |
| GSE94120 | GSE94120_U2OS-PcTF_rel_abundance_1x3.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE64641 | GSE64641_seedling_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE85442 | GSE85442_cuffdiff.tss_group_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE77901 | GSE77901_SLNCR1_vs_vector.deseq.txt.gz | conservative | NA | anti-conservative | 0.65 | ||
| GSE70806 | GSE70806_rf6a_matrix.txt.gz | conservative | NA | NA | NA | NA | |
| GSE68360 | GSE68360_cds.diff.gz | conservative | NA | NA | NA | NA | |
| GSE50554 | GSE50554_Routine_gene.diff.gz | conservative | NA | NA | NA | NA | |
| GSE75640 | GSE75640_HR2_vs_control_2_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE81707 | GSE81707_N2_HC125_RNA-seq_PairedEnd_gene_exp_diff.xlsx | conservative | NA | NA | NA | NA | |
| GSE94843 | GSE94843_cuffdiff_mock_vs_mnv.txt.gz | conservative | NA | NA | NA | NA | |
| GSE94120 | GSE94120_U2OSpos_rel_abundance_1x1.txt.gz | conservative | NA | NA | NA | NA | |
| GSE85863 | GSE85863_Galaxy238-_Cuffdiff_on_data_40__data_35_and_others_gene_differential_expression_testing.txt.gz | conservative | NA | NA | NA | NA | |
| GSE77901 | GSE77901_SLNCR1cons_vs_vector.deseq.txt.gz | conservative | NA | anti-conservative | 0.92 | ||
| GSE80128 | GSE80128_P035_DESeq_KO-WT_pathway.txt.gz | bimodal | NA | anti-conservative | 0.80 | ||
| GSE76125 | GSE76125_SenesUntreated_vs_SenesTreated_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE68360 | GSE68360_cds_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE47083 | GSE47083_WTvsSclKO_WTvsGata12KO.xlsx.gz-set-0 | conservative | NA | NA | NA | NA | |
| GSE47083 | GSE47083_WTvsSclKO_WTvsGata12KO.xlsx.gz-set-1 | conservative | NA | NA | NA | NA | |
| GSE61845 | GSE61845_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE59850 | GSE59850_redgrn_late_cuffdiff_out.diff.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE52502 | GSE52502_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE50554 | GSE50554_Routine_isoform.diff.gz | conservative | NA | NA | NA | NA | |
| GSE44333 | GSE44333_d33_mock_vs_mhv_res_noNA.txt.gz | bimodal | NA | anti-conservative | 0.96 | ||
| GSE93748 | GSE93748_shTAZ_in_DU145_proceeded_data.xlsx | spiky | NA | anti-conservative | 0.91 | ||
| GSE81707 | GSE81707_N2_HC125_RNA-seq_SingleEnd_gene_exp_diff.xlsx | conservative | NA | NA | NA | NA | |
| GSE94821 | GSE94821_cuffdiff_mock_vs_12hpi.txt.gz | conservative | NA | NA | NA | NA | |
| GSE77422 | GSE77422_H358_Control-GNF5.xlsx-sheet-Sheet1 | conservative | NA | NA | NA | NA | |
| GSE67001 | GSE67001_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE77901 | GSE77901_SLNCR1deltacons_vs_vector.deseq.txt.gz | bimodal | NA | anti-conservative | 0.57 | ||
| GSE70314 | GSE70314_Gal474_cuffdiff_sictrl.1_siAtad2.1_gene_differential_expression_testing.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE68360 | GSE68360_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE61796 | GSE61796_NG_Induced_transcript_changes.txt.gz | conservative | NA | NA | NA | NA | |
| GSE50554 | GSE50554_Stringent_gene.diff.gz | conservative | NA | NA | NA | NA | |
| GSE49389 | GSE49389_RNAseq_gene_exp.txt.gz | conservative | NA | NA | NA | NA | |
| GSE93339 | GSE93339_e125_Yap-mt_lung_all_genes.txt.gz | conservative | NA | NA | NA | NA | |
| GSE85385 | GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-H3WT_EPZ_x_K27M_EPZ | other | NA | NA | NA | NA | |
| GSE94821 | GSE94821_cuffdiff_mock_vs_16hpi.txt.gz | conservative | NA | NA | NA | NA | |
| GSE77422 | GSE77422_PC9M_Control-GNF5.xlsx | conservative | NA | NA | NA | NA | |
| GSE77693 | GSE77693_deseq.comparison.csv.gz | spiky | NA | anti-conservative | 1.00 | ||
| GSE68360 | GSE68360_isoform_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE59850 | GSE59850_redrho_late_cuffdiff_out.diff.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE50554 | GSE50554_Stringent_isoform.diff.gz | conservative | NA | NA | NA | NA | |
| GSE94821 | GSE94821_cuffdiff_mock_vs_20hpi.txt.gz | conservative | NA | NA | NA | NA | |
| GSE77422 | GSE77422_PC9M_SCR-AA.xlsx | conservative | NA | NA | NA | NA | |
| GSE75332 | GSE75332_Ad_AGGF1vsAd_NC.Differential_analysis_results.txt.gz | other | NA | NA | NA | NA | |
| GSE74893 | GSE74893_ctrl_and_Tsc1ckO_gene_exp.txt.gz | conservative | NA | NA | NA | NA | |
| GSE70314 | GSE70314_Gal476_cuffdiff_sictrl.1_siAtad2.1_transcript_differential_expression_testing.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE74196 | GSE74196_SnapC_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE68360 | GSE68360_promoters.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE54240 | GSE54240_phoP_RNA-seq.tsv.gz | bimodal | NA | NA | NA | NA | |
| GSE94821 | GSE94821_cuffdiff_mock_vs_4hpi.txt.gz | conservative | NA | NA | NA | NA | |
| GSE77422 | GSE77422_PC9_Control-GNF5.xlsx | conservative | NA | NA | NA | NA | |
| GSE81593 | GSE81593_1.Mcf10A_p53delVec_and_p53delHras.xlsx | bimodal | NA | anti-conservative | 0.36 | ||
| GSE70833 | GSE70833_Rennoll_et_al_processed_data.xlsx-sheet-Cuffdiff | conservative | NA | NA | NA | NA | |
| GSE68360 | GSE68360_splicing.diff.gz | conservative | NA | NA | NA | NA | |
| GSE63133 | GSE63133_D.rerio_SVCV_infected__24K__vs_control_0K.txt.gz | conservative | NA | NA | NA | NA | |
| GSE56052 | GSE56052_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE59850 | GSE59850_redvio_late_cuffdiff_out.diff.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE57682 | GSE57682_Id2_3_Treg_G42_Cuffdiff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE89572 | GSE89572_24h_DEGs.txt.gz | conservative | NA | NA | NA | NA | |
| GSE88970 | GSE88970_Whsc1_proB_DE.xlsx-sheet-4P_05_WT_vs_KO_results | spiky | NA | anti-conservative | 0.88 | ||
| GSE94821 | GSE94821_cuffdiff_mock_vs_8hpi.txt.gz | conservative | NA | NA | NA | NA | |
| GSE77422 | GSE77422_PC9_SCR-AA.xlsx | conservative | NA | NA | NA | NA | |
| GSE81593 | GSE81593_2.Mcf10A_Vec_and_Hras.xlsx | bimodal | NA | anti-conservative | 0.63 | ||
| GSE83827 | GSE83827_WT_vs_tf5.xlsx-sheet-gene_exp_diff | bimodal | NA | NA | NA | NA | |
| GSE70314 | GSE70314_Gal485_cuffdiff_sictrl.2_siAtad2.2_gene_differential_expression_testing.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE60630 | GSE60630_PDC3_vs_DMSO_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE56073 | GSE56073_PARP-1-KD_tss_group_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE71295 | GSE71295_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE63836 | GSE63836_Dx_versus_C15Dx.DESeq.txt.gz | bimodal | NA | anti-conservative | 0.83 | ||
| GSE62668 | GSE62668_Embryo.txt.gz | conservative | NA | NA | NA | NA | |
| GSE63133 | GSE63133_D.rerio_SVCV_infected__24S__vs_control_0S.txt.gz | conservative | NA | NA | NA | NA | |
| GSE59980 | GSE59980_RNA-seq_598-SKD.txt.gz-set-0 | spiky | NA | NA | NA | NA | |
| GSE43660 | GSE43660_control_vs_IL4_1hr.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE36695 | GSE36695_H1H9KSR_SFM.txt.gz | conservative | NA | NA | NA | NA | |
| GSE89572 | GSE89572_2h_DEGs.txt.gz | conservative | NA | NA | NA | NA | |
| GSE71133 | GSE71133_Supplementary_Table_2.xlsx-sheet-FC > 0 | uniform | NA | other | NA | ||
| GSE71133 | GSE71133_Supplementary_Table_2.xlsx-sheet-FC < 0 | uniform | NA | other | NA | ||
| GSE60630 | GSE60630_PDC3_vs_DMSO_isoform_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE56073 | GSE56073_PARylation_tss_group_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE59621 | GSE59621_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE62668 | GSE62668_Sperm.txt.gz | conservative | NA | NA | NA | NA | |
| GSE63133 | GSE63133_D.rerio_SVCV_infected__6K__vs_control_0K.txt.gz | conservative | NA | NA | NA | NA | |
| GSE60171 | GSE60171_cuffdiff.FGF-1day.vs.iBET-1day.txt.gz | conservative | NA | NA | NA | NA | |
| GSE59850 | GSE59850_rhogrn_early_cuffdiff_out.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE50739 | GSE50739_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE43660 | GSE43660_control_vs_IL4_4hr.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE36695 | GSE36695_H1H9KSR_hfSFM.txt.gz | conservative | NA | NA | NA | NA | |
| GSE89572 | GSE89572_7d_DEGs.txt.gz | conservative | NA | NA | NA | NA | |
| GSE98526 | GSE98526_A2_vs_UA159T5.txt.gz | other | NA | NA | NA | NA | |
| GSE94783 | GSE94783_rnaseq_process_cuffdiff_global_DMSO_Flut_PPC_genes_diff.tsv.gz | conservative | NA | NA | NA | NA | |
| GSE70314 | GSE70314_Gal487_cuffdiff_sictrl.2_siAtad2.2_transcript_differential_expression_testing.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE60630 | GSE60630_PDC3_vs_DMSO_splicing.diff.gz | conservative | NA | NA | NA | NA | |
| GSE67029 | GSE67029_cuffdiff_mh_h8.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE63133 | GSE63133_D.rerio_SVCV_infected__6S__vs_control_0S.txt.gz | conservative | NA | NA | NA | NA | |
| GSE53470 | GSE53470_gene_exp_P251_PCJ_3rep_combined.diff.gz | conservative | NA | NA | NA | NA | |
| GSE60171 | GSE60171_cuffdiff.FGF-5days.vs.iBET-5days.txt.gz | conservative | NA | NA | NA | NA | |
| GSE43660 | GSE43660_control_vs_il33_1hr.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE36695 | GSE36695_H1KSR_H1SFM.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE94783 | GSE94783_rnaseq_process_cuffdiff_global_DMSO_Flut_genes_diff.tsv.gz | conservative | NA | NA | NA | NA | |
| GSE71159 | GSE71159_E3KO_vs_EfCtrl_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE73893 | GSE73893_Results_DEXseq.txt.gz | uniform | NA | NA | NA | NA | |
| GSE54473 | GSE54473_Suv420_gene_exp.xlsx.gz-sheet-gene_exp | bimodal | NA | NA | NA | NA | |
| GSE53470 | GSE53470_gene_exp_P251_PJD_3rep_combined.diff.gz | conservative | NA | NA | NA | NA | |
| GSE54286 | GSE54286_Lys_sup_pelle_rs_mvhip_Exp.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE43660 | GSE43660_control_vs_il33_4hr.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE36695 | GSE36695_H1SFM_H9SFM.txt.gz | conservative | NA | NA | NA | NA | |
| GSE94783 | GSE94783_rnaseq_process_cuffdiff_global_DMSO_PPC_genes_diff.tsv.gz | conservative | NA | NA | NA | NA | |
| GSE71159 | GSE71159_ECtrl_vs_E3KO_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE58115 | GSE58115_4858DM98-3_VS_4858C6_differential_all.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE36695 | GSE36695_H1SFM_hfSFM.txt.gz | conservative | NA | NA | NA | NA | |
| GSE35178 | GSE35178_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE79724 | GSE79724_DEseq_LG3-LG6-LG9_LG2-LG5-LG8_DEG_list.csv.gz | conservative | NA | other | NA | ||
| GSE89504 | GSE89504_TSS_groups_exp.tabular.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE85328 | GSE85328_Leukaemia_MLL-AF9_RingKO.txt.gz | bimodal | NA | anti-conservative | 0.76 | ||
| GSE81575 | GSE81575_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE71159 | GSE71159_ECtrl_vs_EfCtrl_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE72172 | GSE72172_S2_vs_SIN3_187.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE36695 | GSE36695_H9KSR_H9SFM.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE35178 | GSE35178_isoform_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE34329 | GSE34329_processed_RNAseq_N_way_cuffdiff_combined_replicates_NIvIvPAvPS1145.diff.gz | conservative | NA | NA | NA | NA | |
| GSE79723 | GSE79723_DEseq_LG1401-LG437-LG8736_LG1405-LG435-LG8737_DEG_list.csv.gz | conservative | NA | anti-conservative | 0.89 | ||
| GSE87307 | GSE87307_mRNA_processed_results.xlsx | bimodal | NA | NA | NA | NA | |
| GSE62200 | GSE62200_Table_S4.xls.gz-sheet-Table S5 N2Y6-E VS LYP9-E | conservative | NA | NA | NA | NA | |
| GSE62200 | GSE62200_Table_S4.xls.gz-sheet-Table S4 | bimodal | NA | NA | NA | NA | |
| GSE36695 | GSE36695_H9KSR_hfSFM.txt.gz | conservative | NA | NA | NA | NA | |
| GSE34274 | GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-0 | bimodal | NA | NA | NA | NA | |
| GSE34274 | GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-1 | bimodal | NA | NA | NA | NA | |
| GSE34274 | GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-2 | bimodal | NA | NA | NA | NA | |
| GSE34274 | GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-3 | spiky | NA | NA | NA | NA | |
| GSE34274 | GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-4 | spiky | NA | NA | NA | NA | |
| GSE34274 | GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-5 | bimodal | NA | NA | NA | NA | |
| GSE81865 | GSE81865_RNAseq_uninjured-14dpi.txt.gz | bimodal | NA | anti-conservative | 0.46 | ||
| GSE76453 | GSE76453_cuffdiff_E2.diff.gz | conservative | NA | NA | NA | NA | |
| GSE53599 | GSE53599_D5-1322_vs_RLuc-713_24hrs.txt.gz | conservative | NA | NA | NA | NA | |
| GSE36695 | GSE36695_H9SFM_hfSFM.txt.gz | conservative | NA | NA | NA | NA | |
| GSE97129 | GSE97129_CG9879_vs_WT_CuffDiff_Output_BDGP5.txt.gz | conservative | NA | NA | NA | NA | |
| GSE83265 | GSE83265_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE89504 | GSE89504_gene_exp.tabular.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE85950 | GSE85950_EHEC_plusminus_Symbioflor.xlsx | spiky | NA | NA | NA | NA | |
| GSE76453 | GSE76453_cuffdiff_siCtl.diff.gz | conservative | NA | NA | NA | NA | |
| GSE75247 | GSE75247_processed_data.txt.gz-set-0 | spiky | NA | NA | NA | NA | |
| GSE75247 | GSE75247_processed_data.txt.gz-set-1 | spiky | NA | NA | NA | NA | |
| GSE69125 | GSE69125_10408_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE60441 | GSE60441_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE53599 | GSE53599_D5-1322_vs_RLuc-713_48hrs.txt.gz | conservative | NA | NA | NA | NA | |
| GSE97129 | GSE97129_Can_vs_WT_CuffDiff_Output_BDGP5.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE83819 | GSE83819_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE85554 | GSE85554_deg_and_counts_table_new_read_counts.txt.gz | spiky | NA | other | NA | ||
| GSE76453 | GSE76453_cuffdiff_siZNF143.diff.gz | conservative | NA | NA | NA | NA | |
| GSE77398 | GSE77398_ribo_cuffdiff_genes.xls.gz | bimodal | NA | NA | NA | NA | |
| GSE66619 | GSE66619_DRG_Con_vs_Ips_mrna_gene_exp.diff.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE68813 | GSE68813_Woolnough2015_CuffDiff_RNA-seq.xlsx-sheet-rep1 CuffDiff Mock vs AGO2-KD | conservative | NA | NA | NA | NA | |
| GSE68813 | GSE68813_Woolnough2015_CuffDiff_RNA-seq.xlsx-sheet-rep2 CuffDiff Mock vs AGO2-KD | conservative | NA | NA | NA | NA | |
| GSE52284 | GSE52284_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE53599 | GSE53599_D5-2086_vs_RLuc-713_24hrs.txt.gz | conservative | NA | NA | NA | NA | |
| GSE87824 | GSE87824_processed_data.xlsx | bimodal | NA | NA | NA | NA | |
| GSE97129 | GSE97129_Comr_vs_WT_CuffDiff_Output_BDGP5.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE88700 | GSE88700_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE87168 | GSE87168_Watson_et_al_TOXSCI-16-0457_Diff_Gen_Exp.csv.gz | conservative | NA | NA | NA | NA | |
| GSE76453 | GSE76453_cuffdiff_veh.diff.gz | conservative | NA | NA | NA | NA | |
| GSE77862 | GSE77862_nhay_-_Alb-Cre.xlsx | conservative | NA | NA | NA | NA | |
| GSE65406 | GSE65406_control_vs_gld1_DESeq.csv.gz | conservative | NA | anti-conservative | 1.00 | ||
| GSE66619 | GSE66619_Dorsal_Cord_Ipsi_vs_Con_mrna_gene_exp.diff.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE63889 | GSE63889_Diff_0U_120U_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE53599 | GSE53599_D5-2086_vs_RLuc-713_48hrs.txt.gz | conservative | NA | NA | NA | NA | |
| GSE97129 | GSE97129_Mip40_vs_WT_CuffDiff_Output_BDGP5.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE76257 | GSE76257_O-VG_OGS2.csv.gz | bimodal | NA | anti-conservative | 0.21 | ||
| GSE83887 | GSE83887_gene_exp_Hyl-2_vs_Hyl-2-G.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE78199 | GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-0 | conservative | NA | NA | NA | NA | |
| GSE78199 | GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-1 | conservative | NA | NA | NA | NA | |
| GSE78199 | GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-2 | conservative | NA | NA | NA | NA | |
| GSE78199 | GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-3 | conservative | NA | NA | NA | NA | |
| GSE78199 | GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-4 | conservative | NA | NA | NA | NA | |
| GSE78199 | GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-5 | conservative | NA | NA | NA | NA | |
| GSE65406 | GSE65406_gld1_vs_tumorfast_DESeq.csv.gz | conservative | NA | other | NA | ||
| GSE63889 | GSE63889_Diff_120U_120C_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE53653 | GSE53653_st10.5_Foxh1_MO_gene_exp_diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE33265 | GSE33265_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE83887 | GSE83887_gene_exp_N2_vs_Hyl-2.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE83584 | GSE83584_processed_data_Day0.txt.gz | conservative | NA | NA | NA | NA | |
| GSE65406 | GSE65406_gld1_vs_tumorfed_DESeq.csv.gz | conservative | NA | other | NA | ||
| GSE63485 | GSE63485_KS_J1Csh63_vs_KS_CTRL.two_replicates.all_gene_exp.tbl.txt.gz | conservative | NA | NA | NA | NA | |
| GSE73077 | GSE73077_fpkm_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE53653 | GSE53653_st10.5_SB431542_gene_exp_diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE52551 | GSE52551_delta_Rv3263_expr.txt.gz | other | NA | NA | NA | NA | |
| GSE46066 | GSE46066_ICRFVsDMSO.txt.gz | bimodal | NA | anti-conservative | 0.79 | ||
| GSE33265 | GSE33265_isoform_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE83567 | GSE83567_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE83887 | GSE83887_gene_exp_N2_vs_N2G.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE77034 | GSE77034_aza_vs_PBS.gene_exp.tsv.gz | conservative | NA | NA | NA | NA | |
| GSE83584 | GSE83584_processed_data_Day3_5.txt.gz | conservative | NA | NA | NA | NA | |
| GSE77793 | GSE77793_gene_exp_diff_fc_hepatocytes_DMSO_GL_TamerSallam_122012.txt.gz | conservative | NA | NA | NA | NA | |
| GSE65406 | GSE65406_tumorfed_vs_tumorfast_DESeq.csv.gz | conservative | NA | other | NA | ||
| GSE63485 | GSE63485_KS_J1Csh95_vs_KS_CTRL.two_replicates.all_gene_exp.tbl.txt.gz | conservative | NA | NA | NA | NA | |
| GSE71369 | GSE71369_Processed_data_GRO_seq.xlsx-sheet-untethered_vs_tethered_RPM | bimodal | NA | NA | NA | NA | |
| GSE60756 | GSE60756_Richards_092013_B6_vs_Cast_DESeq_Stats-NormSignal_Annotated.txt.gz | uniform | NA | spiky | NA | ||
| GSE85402 | GSE85402_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE81251 | GSE81251_Kdm6a_def_mouse_expression_value.xlsx | spiky | NA | uniform | NA | ||
| GSE86837 | GSE86837_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE60177 | GSE60177_PseudomonasDESeq.txt.gz | conservative | NA | NA | NA | NA | |
| GSE77034 | GSE77034_aza_vs_vc.gene_exp.tsv.gz | conservative | NA | NA | NA | NA | |
| GSE80135 | GSE80135_Lipo_siProx_sig_results.csv.gz | spiky | NA | anti-conservative | 0.73 | ||
| GSE65406 | GSE65406_youngadults_vs_gld1_DESeq.csv.gz | conservative | NA | anti-conservative | 1.00 | ||
| GSE76627 | GSE76627_CNBP-cuffdif.xlsx.gz | conservative | NA | NA | NA | NA | |
| GSE63485 | GSE63485_shAML1_ETO_vs_shControl.all_gene_exp.tbl.txt.gz | conservative | NA | NA | NA | NA | |
| GSE66575 | GSE66575_RNAseq_genes_expression.xlsx-sheet-control_vs_comparison.gene_exp | conservative | NA | NA | NA | NA | |
| GSE66575 | GSE66575_RNAseq_genes_expression.xlsx-sheet-control_vs_comparison.isoform_e | conservative | NA | NA | NA | NA | |
| GSE65408 | GSE65408_processed_data_file.csv.gz | conservative | NA | NA | NA | NA | |
| GSE40548 | GSE40548_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE38414 | GSE38414_Maize_Silks_mRNA-Seq_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE89168 | GSE89168_36hpupalCNS_WT_dStimKD_CuffDiff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE91060 | GSE91060_E11_vs._E16.xls.gz | bimodal | NA | NA | NA | NA | |
| GSE87240 | GSE87240_gene_expnorliver.diff.gz | conservative | NA | NA | NA | NA | |
| GSE83405 | GSE83405_geneExpDiffData_E14_cells_pnldc1_silencing.xlsx-sheet-Φύλλο1 | conservative | NA | NA | NA | NA | |
| GSE77034 | GSE77034_combo_vs_PBS.gene_exp.tsv.gz | conservative | NA | NA | NA | NA | |
| GSE85321 | GSE85321_Supplemental_Table_2_YAD_RNA_seq_.xls.gz-sheet-YAD_Diff analysis | bimodal | NA | NA | NA | NA | |
| GSE80135 | GSE80135_siNeg_Lipo_results.csv.gz | spiky | NA | anti-conservative | 0.77 | ||
| GSE74131 | GSE74131_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE75832 | GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P14_P2_gene_exp_up | conservative | NA | NA | NA | NA | |
| GSE75832 | GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P14_P7_gene_exp_up | conservative | NA | NA | NA | NA | |
| GSE75832 | GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P14_P7_gene_exp_down | bimodal | NA | NA | NA | NA | |
| GSE75832 | GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P7_P2_gene_exp_up | conservative | NA | NA | NA | NA | |
| GSE75832 | GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P7_P2_gene_exp_down | bimodal | NA | NA | NA | NA | |
| GSE46486 | GSE46486_young_old_deseq.txt.gz | conservative | NA | spiky | NA | ||
| GSE91060 | GSE91060_E11_vs._P1.xlsx | bimodal | NA | NA | NA | NA | |
| GSE84145 | GSE84145_E12.5RET_WT_NULL.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE87240 | GSE87240_gene_expsk.diff.gz | conservative | NA | NA | NA | NA | |
| GSE77034 | GSE77034_combo_vs_aza.gene_exp.tsv.gz | conservative | NA | NA | NA | NA | |
| GSE85321 | GSE85321_Supplemental_Table_3_YGD_RNA_seq_.xls.gz-sheet-YGD_Diff analysis | bimodal | NA | NA | NA | NA | |
| GSE80135 | GSE80135_siNeg_siProx_SC_results.csv.gz | spiky | NA | anti-conservative | 0.78 | ||
| GSE67063 | GSE67063_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE75832 | GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P2_1_P2_3_gene_exp_up | conservative | NA | NA | NA | NA | |
| GSE75832 | GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P2_1_P2_3_gene_exp_down | conservative | NA | NA | NA | NA | |
| GSE75832 | GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P7_1_P7_2_gene_exp_up | conservative | NA | NA | NA | NA | |
| GSE75832 | GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P7_1_P7_2_gene_exp_down | conservative | NA | NA | NA | NA | |
| GSE75832 | GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P14_2_P14_3_gene_exp_up | conservative | NA | NA | NA | NA | |
| GSE75832 | GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P14_2_P14_3_gene_exp_down | conservative | NA | NA | NA | NA | |
| GSE55394 | GSE55394_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE63758 | GSE63758_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE44831 | GSE44831_BALBfabD1_BALBmockD1_24hr_post_expr.txt.gz | conservative | NA | NA | NA | NA | |
| GSE38413 | GSE38413_Maize_Pericarp_14DAP_mRNA-Seq_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE99347 | GSE99347_H2AfZKO_WT.anno.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE89168 | GSE89168_72hpupalCNS_WT_dStimKD+Recovery_CuffDiff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE92345 | GSE92345_H9_I_pqvalues.poisson.txt.gz | conservative | NA | NA | NA | NA | |
| GSE91060 | GSE91060_E16_vs._P1.xlsx | bimodal | NA | NA | NA | NA | |
| GSE87240 | GSE87240_hep_gene_exphep.diff.gz | conservative | NA | NA | NA | NA | |
| GSE77034 | GSE77034_combo_vs_vc.gene_exp.tsv.gz | conservative | NA | NA | NA | NA | |
| GSE68736 | GSE68736_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE79822 | GSE79822_Deseq_totalRNA.txt.gz | bimodal | NA | anti-conservative | 0.46 | ||
| GSE64185 | GSE64185_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE51893 | GSE51893_wt_v_MZeomesa-sphere_gene_exp.txt.gz | conservative | NA | NA | NA | NA | |
| GSE60825 | GSE60825_Differential_Expression.xlsx-sheet-Cntrl Hypoxia vs ELT-2 Hypoxia | conservative | NA | NA | NA | NA | |
| GSE60825 | GSE60825_Differential_Expression.xlsx-sheet-Cntrl Hypoxia vs ELT-2 Normoxia | conservative | NA | NA | NA | NA | |
| GSE60825 | GSE60825_Differential_Expression.xlsx-sheet-Cntrl Normoxia vs Cntrl Hypoxia | conservative | NA | NA | NA | NA | |
| GSE60825 | GSE60825_Differential_Expression.xlsx-sheet-Cntrl Normoxia vs ELT-2 Hypoxia | conservative | NA | NA | NA | NA | |
| GSE60825 | GSE60825_Differential_Expression.xlsx-sheet-Cntl Normoxia vs ELT-2 Normoxia | conservative | NA | NA | NA | NA | |
| GSE60825 | GSE60825_Differential_Expression.xlsx-sheet-ELT-Normoxia vs ELT-2 Hypoxia | conservative | NA | NA | NA | NA | |
| GSE44831 | GSE44831_BALBfabD1_BALBmockD1_exp.txt.gz | conservative | NA | NA | NA | NA | |
| GSE92345 | GSE92345_H9_P_pqvalues.poisson.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE77034 | GSE77034_vc_vs_PBS.gene_exp.tsv.gz | conservative | NA | NA | NA | NA | |
| GSE85321 | GSE85321_Supplemental_Table_5_YAR_RNA_seq_.xls.gz-sheet-YAR diff. analysis | bimodal | NA | NA | NA | NA | |
| GSE79822 | GSE79822_cuffdiffs_mRNA.txt.gz | conservative | NA | NA | NA | NA | |
| GSE63794 | GSE63794_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE44831 | GSE44831_BALBfab_BALBmj_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE38413 | GSE38413_Maize_Pericarp_25DAP_mRNA-Seq_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE96814 | GSE96814_Deseq2_MS2RsaA.xlsx-sheet-Feuil1 | other | NA | other | NA | ||
| GSE92345 | GSE92345_HEK_I_pqvalues.poisson.txt.gz | conservative | NA | NA | NA | NA | |
| GSE77032 | GSE77032_aza_vs_PBS.gene_exp.tsv.gz | conservative | NA | NA | NA | NA | |
| GSE85321 | GSE85321_Supplemental_Table_6_JHD2_OE_YAD_.xls.gz-sheet-OE_EV_YAD_Diff analysis | conservative | NA | NA | NA | NA | |
| GSE74381 | GSE74381_gene_exp_control2vsZeb2cKO2diff.xlsx | bimodal | NA | NA | NA | NA | |
| GSE80068 | GSE80068_col_dms3_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE70728 | GSE70728_KDM2B_RNAseq_DEG.diff.gz | conservative | NA | NA | NA | NA | |
| GSE69721 | GSE69721_UP-_and_Down-regulated_genes.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE64544 | GSE64544_LV_processed.txt.gz | conservative | NA | NA | NA | NA | |
| GSE42805 | GSE42805_acute_gene.diff.gz | conservative | NA | NA | NA | NA | |
| GSE44831 | GSE44831_C57BL6fabD1_C57BL6mockD1_24hr_post_expr.txt.gz | conservative | NA | NA | NA | NA | |
| GSE96814 | GSE96814_Deseq_TotRNA.xlsx-sheet-Feuil1 | other | NA | other | NA | ||
| GSE92345 | GSE92345_HEK_P_pqvalues.poisson.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE77032 | GSE77032_aza_vs_vc.gene_exp.tsv.gz | conservative | NA | NA | NA | NA | |
| GSE85321 | GSE85321_Supplemental_Table_7_JHD2_OE_YAR_.xls.gz-sheet-OE_EV_YAR_Diff analysis | conservative | NA | NA | NA | NA | |
| GSE78834 | GSE78834_gene_expression_profiles.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE80068 | GSE80068_col_h2h9_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE64544 | GSE64544_MV_processed.txt.gz | conservative | NA | NA | NA | NA | |
| GSE62647 | GSE62647_Setd8_differential_expression_analyses.txt.gz | conservative | NA | NA | NA | NA | |
| GSE47395 | GSE47395_gene_exp.diff.anno.known.csv.gz | conservative | NA | NA | NA | NA | |
| GSE42805 | GSE42805_cds.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE52385 | GSE52385_siCtrl_VS_siSRA_assemblenewgenes.txt.gz | conservative | NA | NA | NA | NA | |
| GSE44831 | GSE44831_C57BL6fabD1_C57BL6mockD1_exp.txt.gz | conservative | NA | NA | NA | NA | |
| GSE87890 | GSE87890_vgat1_csv.csv.gz | conservative | NA | NA | NA | NA | |
| GSE92874 | GSE92874_RNA.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE95181 | GSE95181_HNS_counts_and_DGE.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE66155 | GSE66155_regulation.txt.gz | conservative | NA | NA | NA | NA | |
| GSE77032 | GSE77032_combo_vs_PBS.gene_exp.tsv.gz | conservative | NA | NA | NA | NA | |
| GSE80707 | GSE80707_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE78527 | GSE78527_siSNRNP40_siControl_processed.txt.gz | conservative | NA | NA | NA | NA | |
| GSE80068 | GSE80068_col_nrpe1_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE42805 | GSE42805_cds_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE52385 | GSE52385_siCtrl_VS_siSRA_notassemblenewgenes.txt.gz | conservative | NA | NA | NA | NA | |
| GSE46807 | GSE46807_GEO_values_TAF4_RNAseq_Tophat.Cufflinks_mm9_WeiYi.txt.gz-set-0 | bimodal | NA | NA | NA | NA | |
| GSE46807 | GSE46807_GEO_values_TAF4_RNAseq_Tophat.Cufflinks_mm9_WeiYi.txt.gz-set-1 | bimodal | NA | NA | NA | NA | |
| GSE46807 | GSE46807_GEO_values_TAF4_RNAseq_Tophat.Cufflinks_mm9_WeiYi.txt.gz-set-2 | conservative | NA | NA | NA | NA | |
| GSE44831 | GSE44831_C57BLfab_C57BLmj_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE87890 | GSE87890_vgat2_csv.csv.gz | conservative | NA | NA | NA | NA | |
| GSE79677 | GSE79677_Crossbred_vs._Purebred_comparison_group.tabular.txt.gz | conservative | NA | NA | NA | NA | |
| GSE78965 | GSE78965_C57Bl6_MCS_vs_FST_acute_gene_differential_expression_testing.txt.gz | conservative | NA | NA | NA | NA | |
| GSE77032 | GSE77032_combo_vs_aza.gene_exp.tsv.gz | conservative | NA | NA | NA | NA | |
| GSE71916 | GSE71916_Expression_Cufflinks_siRbfox1_3+Flag-Rbfox1_C_compared_to_siRbfox1_3+EGFP.txt.gz | other | NA | NA | NA | NA | |
| GSE67787 | GSE67787_con_bps_wex_RNAseq_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE70283 | GSE70283_cuffdiff_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE66506 | GSE66506_DE_analysis_010714.xlsx-sheet-All_Genes | bimodal | NA | NA | NA | NA | |
| GSE42805 | GSE42805_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE52450 | GSE52450_Cuffdiff_on_pre-pro-B_and_pro-B_aligned_reads_transcript_differential_expression_testing_Bv46.txt.gz | conservative | NA | NA | NA | NA | |
| GSE44831 | GSE44831_matrix_BALB_C57BL.txt.gz | conservative | NA | NA | NA | NA | |
| GSE36872 | GSE36872_NascentSeq_Mouse_Liver_NormalizedGeneSignal.txt.gz | spiky | NA | NA | NA | NA | |
| GSE87890 | GSE87890_vglut1_csv.csv.gz | conservative | NA | NA | NA | NA | |
| GSE98875 | GSE98875_Diff.summary.xlsx-sheet-all_genes | conservative | NA | NA | NA | NA | |
| GSE96072 | GSE96072_Galaxy106-_Cuffdiff_on_data_40__data_39_and_others_transcript_differential_expression_testing.tabular.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE79677 | GSE79677_One_by_one_comparisons.tabular.txt.gz | conservative | NA | NA | NA | NA | |
| GSE78965 | GSE78965_C57Bl6_MCS_vs_FST_chronic_gene_differential_expression_testing.txt.gz | conservative | NA | NA | NA | NA | |
| GSE77032 | GSE77032_combo_vs_vc.gene_exp.tsv.gz | conservative | NA | NA | NA | NA | |
| GSE73083 | GSE73083_3F_Lef1_PlusversusMinusDOX_ProcessedFiles.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE79416 | GSE79416_new-lncRNA_transcript_output.xls.gz | bimodal | NA | NA | NA | NA | |
| GSE71916 | GSE71916_Expression_Cufflinks_siRbfox1_3+Flag-Rbfox1_N_compared_to_siRbfox1_3+EGFP.txt.gz | other | NA | NA | NA | NA | |
| GSE66478 | GSE66478_gene_exp.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE55090 | GSE55090_cds_exp.diff.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE42805 | GSE42805_isoform_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE50068 | GSE50068_Cuffdiff_output.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE36871 | GSE36871_RNASeq_Mouse_Liver_NormalizedGeneSignal.txt.gz | spiky | NA | NA | NA | NA | |
| GSE87890 | GSE87890_vglut2_csv.csv.gz | conservative | NA | NA | NA | NA | |
| GSE82164 | GSE82164_Cuffdiff_gene_differential_expression_testing.tabular.txt.gz | conservative | NA | NA | NA | NA | |
| GSE96072 | GSE96072_Galaxy24-_Cuffdiff_on_data_7__data_6_and_others_transcript_differential_expression_testing.tabular.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE77032 | GSE77032_vc_vs_PBS.gene_exp.tsv.gz | conservative | NA | NA | NA | NA | |
| GSE77351 | GSE77351_Farshchian.txt.gz | spiky | NA | anti-conservative | 0.89 | ||
| GSE73082 | GSE73082_F_Sp5_PlusversusMinusDOX_ProcessedFiles.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE77218 | GSE77218_A3_A2.xlsx-sheet-express | bimodal | NA | NA | NA | NA | |
| GSE70766 | GSE70766_Differential_expression.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE68160 | GSE68160_GRdim-RNASeq.xlsx | bimodal | NA | NA | NA | NA | |
| GSE66478 | GSE66478_isoform_exp.txt.gz | conservative | NA | NA | NA | NA | |
| GSE55090 | GSE55090_gene_exp.diff.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE42805 | GSE42805_promoters.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE44846 | GSE44846_O157_genome_total.xlsx.gz-sheet-Sheet1 | bimodal | NA | NA | NA | NA | |
| GSE33141 | GSE33141_TopHatTranscriptsFPKM.xls.gz-sheet-mRNA-Transcripts-FPKM | other | NA | NA | NA | NA | |
| GSE33141 | GSE33141_TopHatTranscriptsFPKM.xls.gz-sheet-Pseudogenes-FPKM | other | NA | NA | NA | NA | |
| GSE87890 | GSE87890_vglut3_csv.csv.gz | conservative | NA | NA | NA | NA | |
| GSE96072 | GSE96072_Galaxy55-_Cuffdiff_on_data_2__data_4_and_others_transcript_differential_expression_testing.tabular.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE76771 | GSE76771_ALL_gene_expression.txt.gz | conservative | NA | NA | NA | NA | |
| GSE77218 | GSE77218_A4_A2.xlsx-sheet-express | bimodal | NA | NA | NA | NA | |
| GSE70711 | GSE70711_IRF4hi.vs.IRF8hi.gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE55870 | GSE55870_CAF90vsNF1493.xlsx.gz | conservative | NA | other | NA | ||
| GSE55090 | GSE55090_isoform_exp.diff.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE42805 | GSE42805_splicing.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE82164 | GSE82164_Cuffdiff_transcript_differential_expression_testing.tabular.txt.gz | conservative | NA | NA | NA | NA | |
| GSE58467 | GSE58467_FPKM.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE80370 | GSE80370_col_morc6_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE77218 | GSE77218_A4_A3.xlsx-sheet-express | bimodal | NA | NA | NA | NA | |
| GSE70711 | GSE70711_IRF8cKO_GCBCell_RPKM_exp_1.csv.gz | conservative | NA | NA | NA | NA | |
| GSE56966 | GSE56966_IL6Ra_WT.xlsx.gz-sheet-gene_exp | other | NA | NA | NA | NA | |
| GSE56966 | GSE56966_IL6Ra_WT.xlsx.gz-sheet-gene_notest | conservative | NA | NA | NA | NA | |
| GSE55090 | GSE55090_tss_group_exp.diff.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE42805 | GSE42805_tss_group_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE83560 | GSE83560_degTest_byCuffdiff.xlsx-sheet-T_11_12_P-T_11_12_C | conservative | NA | NA | NA | NA | |
| GSE83560 | GSE83560_degTest_byCuffdiff.xlsx-sheet-T_11_19_1_P-T_11_19_1_C | conservative | NA | NA | NA | NA | |
| GSE83560 | GSE83560_degTest_byCuffdiff.xlsx-sheet-T_72_P-T_72_C | conservative | NA | NA | NA | NA | |
| GSE79408 | GSE79408_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE90876 | GSE90876_Cuffdiff_PSM_vs_SM.txt.gz | conservative | NA | NA | NA | NA | |
| GSE77113 | GSE77113_GC_WT_vs_Hdac3KO.diff.gz | conservative | NA | NA | NA | NA | |
| GSE80370 | GSE80370_col_suvh2suvh9_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE70711 | GSE70711_IRF8cKO_GCBCell_RPKM_exp_2.csv.gz | conservative | NA | NA | NA | NA | |
| GSE67437 | GSE67437_KO-ILC2-mLN_021815_vs_WT-ILC2-mLN_021815.txt.gz | conservative | NA | NA | NA | NA | |
| GSE56966 | GSE56966_MyD88_WT.xlsx.gz-sheet-gene_exp | other | NA | NA | NA | NA | |
| GSE56966 | GSE56966_MyD88_WT.xlsx.gz-sheet-gene_notest | conservative | NA | NA | NA | NA | |
| GSE51975 | GSE51975_C_v_OVOL1_2_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE81055 | GSE81055_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE90876 | GSE90876_Cuffdiff_SM_vs_SM_Dev.txt.gz | conservative | NA | NA | NA | NA | |
| GSE92246 | GSE92246_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE81114 | GSE81114_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE77113 | GSE77113_Hdac3KO_non-GC_vs_GC.diff.gz | conservative | NA | NA | NA | NA | |
| GSE77675 | GSE77675_Old_vs_Young_isoforms_expression.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE71527 | GSE71527_KO_SNI_Sal_vs_KO_SNI_DMI.xlsx | conservative | NA | NA | NA | NA | |
| GSE60642 | GSE60642_AB056_2.xlsx.gz-set-0 | bimodal | NA | NA | NA | NA | |
| GSE60642 | GSE60642_AB056_2.xlsx.gz-set-1 | bimodal | NA | NA | NA | NA | |
| GSE60642 | GSE60642_AB056_2.xlsx.gz-set-2 | bimodal | NA | NA | NA | NA | |
| GSE59017 | GSE59017_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE57396 | GSE57396_Cuttdiff_cds_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE51975 | GSE51975_C_v_OVOL1_2_isoform_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE81055 | GSE81055_gene_exp.diff_bias.txt.gz | conservative | NA | NA | NA | NA | |
| GSE77229 | GSE77229_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE95234 | GSE95234_IPInputFPKM.xlsx | conservative | NA | NA | NA | NA | |
| GSE79633 | GSE79633_DESeq2_out_FO_GFP_vs_WT.txt.gz | spiky | NA | anti-conservative | 0.77 | ||
| GSE77113 | GSE77113_WT_non-GC_vs_GC.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE71527 | GSE71527_KO_naive_vs_KO_SNI_Sal.xlsx | conservative | NA | NA | NA | NA | |
| GSE68806 | GSE68806_Galaxy_data_Cuffdiff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE67335 | GSE67335_LEF1_Th1.Vs.pMIG_Th1.DESeq_Analysis_DE_Genes.txt.gz | other | NA | other | NA | ||
| GSE60641 | GSE60641_AB03_2.xlsx.gz | bimodal | NA | NA | NA | NA | |
| GSE57227 | GSE57227_PHH_GW_vs_DMSO_RNA_seq_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE59017 | GSE59017_isoform_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE51975 | GSE51975_C_v_OVOL1_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE84301 | GSE84301_Pub_vs_Prepub.Differential_analysis_results.txt.gz | conservative | NA | NA | NA | NA | |
| GSE95234 | GSE95234_NotInfectedInfectedFPKM.xlsx-set-0 | conservative | NA | NA | NA | NA | |
| GSE95234 | GSE95234_NotInfectedInfectedFPKM.xlsx-set-1 | conservative | NA | NA | NA | NA | |
| GSE77113 | GSE77113_non-GC_WT_vs_Hdac3KO.diff.gz | conservative | NA | NA | NA | NA | |
| GSE86202 | GSE86202_1_TreatVSControl_circRNA_differential_expression.xlsx | spiky | NA | NA | NA | NA | |
| GSE71527 | GSE71527_WT_SNI_DMI_vs_KO_SNI_DMI.xlsx | conservative | NA | NA | NA | NA | |
| GSE61351 | GSE61351_Cont_ComparedTo_PTH_D28_CuffDiffAnalysis1.xls.gz | bimodal | NA | NA | NA | NA | |
| GSE64757 | GSE64757_All_FPKMs_GEO.csv.gz | conservative | NA | NA | NA | NA | |
| GSE54433 | GSE54433_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE51975 | GSE51975_C_v_OVOL1_isoform_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE34097 | GSE34097_aff2_genes_cufflinks.txt.gz | conservative | NA | NA | NA | NA | |
| GSE97256 | GSE97256_Y1differentialGenes.tab.gz | conservative | NA | NA | NA | NA | |
| GSE63224 | GSE63224_All_unigene_expression.txt.gz-set-0 | other | NA | NA | NA | NA | |
| GSE63224 | GSE63224_All_unigene_expression.txt.gz-set-1 | other | NA | NA | NA | NA | |
| GSE63224 | GSE63224_All_unigene_expression.txt.gz-set-2 | other | NA | NA | NA | NA | |
| GSE63224 | GSE63224_All_unigene_expression.txt.gz-set-3 | other | NA | NA | NA | NA | |
| GSE63224 | GSE63224_All_unigene_expression.txt.gz-set-4 | other | NA | NA | NA | NA | |
| GSE79758 | GSE79758_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE76868 | GSE76868_Table_S1_RNA-seq.xlsx | bimodal | NA | NA | NA | NA | |
| GSE71527 | GSE71527_WT_SNI_Sal_vs_KO_SNI_Sal.xlsx | conservative | NA | NA | NA | NA | |
| GSE63810 | GSE63810_BCKO_RNASeq_Data.xlsx-sheet-GenesDiffExp | conservative | NA | NA | NA | NA | |
| GSE51975 | GSE51975_C_v_OVOL2_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE34097 | GSE34097_aff3_genes_cufflinks.txt.gz | conservative | NA | NA | NA | NA | |
| GSE83828 | GSE83828_Gene_expression_data.xlsx | bimodal | NA | NA | NA | NA | |
| GSE86202 | GSE86202_Gene_differential_expression.xlsx | conservative | NA | NA | NA | NA | |
| GSE80718 | GSE80718_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE73940 | GSE73940_cuffdiff.gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE71527 | GSE71527_WT_SNI_Sal_vs_WT_SNI_DMI.xlsx | conservative | NA | NA | NA | NA | |
| GSE51975 | GSE51975_C_v_OVOL2_isoform_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE44536 | GSE44536_GEO_Processed_file_excel.xlsx.gz-sheet-FPKM_NC_009338 | bimodal | NA | NA | NA | NA | |
| GSE34097 | GSE34097_aff4_genes_cufflinks.txt.gz | conservative | NA | NA | NA | NA | |
| GSE54641 | GSE54641_DESeq.txt.gz | conservative | NA | anti-conservative | 0.98 | ||
| GSE80349 | GSE80349_results.txt.gz-set-1 | conservative | NA | NA | NA | NA | |
| GSE73940 | GSE73940_cuffdiff.isoform_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE71527 | GSE71527_WT_naive_vs_KO_naive.xlsx | conservative | NA | NA | NA | NA | |
| GSE71252 | GSE71252_Akdogan_RNASeq_Cuffdiff_JUL232015.xlsx-sheet-geneExpDiffData | bimodal | NA | NA | NA | NA | |
| GSE71252 | GSE71252_Akdogan_RNASeq_Cuffdiff_JUL232015.xlsx-sheet-isoformExpDiffData | bimodal | NA | NA | NA | NA | |
| GSE65025 | GSE65025_WT-HSF_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE54641 | GSE54641_cuffdiff2_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE61969 | GSE61969_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE55682 | GSE55682_16h.xls.gz | other | NA | NA | NA | NA | |
| GSE72105 | GSE72105_Differential_Gene_Expression_Summary_D0.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE72994 | GSE72994_cds_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE71527 | GSE71527_WT_naive_vs_WT_SNI_Sal.xlsx | conservative | NA | NA | NA | NA | |
| GSE59481 | GSE59481_PIG_vs_GFP_DE_genes.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE65024 | GSE65024_WT-bhlh_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE61238 | GSE61238_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE58326 | GSE58326_gene_exp.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE41908 | GSE41908_E11.5_E13.5f_cuffdiff1.2.txt.gz | conservative | NA | NA | NA | NA | |
| GSE98759 | GSE98759_gene_exp.txt.gz | other | NA | other | NA | ||
| GSE76865 | GSE76865_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE81059 | GSE81059_cns-control_vs_cns-hh.csv.gz | conservative | NA | other | NA | ||
| GSE55682 | GSE55682_20h.xls.gz | other | NA | NA | NA | NA | |
| GSE72105 | GSE72105_Differential_Gene_Expression_Summary_D6.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE72994 | GSE72994_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE65328 | GSE65328_A17_6V.tab.gz | conservative | NA | anti-conservative | 0.92 | ||
| GSE65022 | GSE65022_cuffdiff-WT_CD_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE41908 | GSE41908_E11.5_E13.5m_cuffdiff1.2.txt.gz | conservative | NA | NA | NA | NA | |
| GSE93280 | GSE93280_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE76864 | GSE76864_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE81059 | GSE81059_cns-control_vs_cns-ptc.csv.gz | conservative | NA | other | NA | ||
| GSE86159 | GSE86159_significance_calls_genes_overexpression.txt.gz | conservative | NA | NA | NA | NA | |
| GSE55682 | GSE55682_24h.xls.gz | other | NA | NA | NA | NA | |
| GSE72105 | GSE72105_Differential_Gene_Expression_Summary_myotubes.txt.gz | conservative | NA | NA | NA | NA | |
| GSE72994 | GSE72994_isoform_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE59020 | GSE59020_ETS1_gene_exp_all.diff.gz | conservative | NA | NA | NA | NA | |
| GSE41908 | GSE41908_E9.5_E11.5_cuffdiff1.2.txt.gz | conservative | NA | NA | NA | NA | |
| GSE95481 | GSE95481_GCN5_RNAi_vs_WT_root_tip_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE86159 | GSE86159_significance_calls_genes_tam_timecourse.txt.gz | conservative | NA | NA | NA | NA | |
| GSE78902 | GSE78902_DEseq_DB001-DB004_DB002-DB003_DEG_list.csv.gz | other | NA | other | NA | ||
| GSE78996 | GSE78996_CTR_vs_EAE_Cuffdiff_analysis.xlsx | bimodal | NA | NA | NA | NA | |
| GSE55682 | GSE55682_48h.xls.gz | other | NA | NA | NA | NA | |
| GSE53040 | GSE53040_wtDMSOvswtD1.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE72105 | GSE72105_Differential_Gene_Expression_Summary_usp10.txt.gz | conservative | NA | NA | NA | NA | |
| GSE72994 | GSE72994_promoters.diff.gz | conservative | NA | NA | NA | NA | |
| GSE59020 | GSE59020_U0126_gene_exp_all.diff.gz | conservative | NA | NA | NA | NA | |
| GSE89110 | GSE89110_RNAseq_shPFKB4_p53_logFC.txt.gz-set-0 | bimodal | NA | NA | NA | NA | |
| GSE89110 | GSE89110_RNAseq_shPFKB4_p53_logFC.txt.gz-set-1 | bimodal | NA | NA | NA | NA | |
| GSE89110 | GSE89110_RNAseq_shPFKB4_p53_logFC.txt.gz-set-2 | bimodal | NA | NA | NA | NA | |
| GSE89110 | GSE89110_RNAseq_shPFKB4_p53_logFC.txt.gz-set-3 | bimodal | NA | NA | NA | NA | |
| GSE95481 | GSE95481_GCN5_RNAi_vs_WT_whole_root_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE95850 | GSE95850_RUCA-I_WT_vs_miR-203_KO_gene_expression.csv.gz | other | NA | NA | NA | NA | |
| GSE86187 | GSE86187_p0wt-ko-gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE93280 | GSE93280_isoform_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE72762 | GSE72762_DEseq_LS023-LS024-LS025_LS030-LS031-LS032_DEG_list.txt.gz | conservative | NA | other | NA | ||
| GSE72059 | GSE72059_21_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE55682 | GSE55682_Baf250a6days.csv.gz | other | NA | NA | NA | NA | |
| GSE53040 | GSE53040_wtDMSOvswtTX129.txt.gz | conservative | NA | NA | NA | NA | |
| GSE72994 | GSE72994_tss_group_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE69113 | GSE69113_AIPVUIP_differential_expression.txt.gz | other | NA | NA | NA | NA | |
| GSE47095 | GSE47095_splicing_diff.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE86187 | GSE86187_p6wt-ko_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE81007 | GSE81007_cds.diff.gz | conservative | NA | NA | NA | NA | |
| GSE72761 | GSE72761_DESeq_LS007-LS008-LS010_LS015-LS016-LS018_DEG_list.txt.gz | conservative | NA | other | NA | ||
| GSE53040 | GSE53040_wtDMSOvswtTX34.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE69113 | GSE69113_BIPVUIP_differential_expression.txt.gz | other | NA | NA | NA | NA | |
| GSE49843 | GSE49843_gene_exp.diff_22345-22353.txt.gz | conservative | NA | NA | NA | NA | |
| GSE43194 | GSE43194_E11_ICR_abundance_rep1.txt.gz-set-0 | bimodal | NA | NA | NA | NA | |
| GSE43194 | GSE43194_E11_ICR_abundance_rep1.txt.gz-set-1 | spiky | NA | NA | NA | NA | |
| GSE43194 | GSE43194_E11_ICR_abundance_rep1.txt.gz-set-2 | spiky | NA | NA | NA | NA | |
| GSE43614 | GSE43614_diff_out.txt.gz | other | NA | NA | NA | NA | |
| GSE98739 | GSE98739_Q111SST_vs_Q111DOP_DEGs_with_fpkm.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE80503 | GSE80503_RNASeqProcessedDESeqData.xlsx | conservative | NA | NA | NA | NA | |
| GSE72764 | GSE72764_DEseq_LS39-LS40-LS42_LS44-LS45-LS48_DEG_list.csv.gz | conservative | NA | other | NA | ||
| GSE77499 | GSE77499_Dd2CQ_Dd2_3D7_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE53040 | GSE53040_wtDMSOvswtTX87.txt.gz | conservative | NA | NA | NA | NA | |
| GSE61202 | GSE61202_NICvsMOdifferential_expression.txt.gz | conservative | NA | NA | NA | NA | |
| GSE58464 | GSE58464_RNA-seq_tophat_microrazers_results.txt.gz-set-0 | conservative | NA | NA | NA | NA | |
| GSE58464 | GSE58464_RNA-seq_tophat_microrazers_results.txt.gz-set-1 | conservative | NA | NA | NA | NA | |
| GSE43194 | GSE43194_E11_ICR_abundance_rep2.txt.gz-set-0 | spiky | NA | NA | NA | NA | |
| GSE43194 | GSE43194_E11_ICR_abundance_rep2.txt.gz-set-1 | spiky | NA | NA | NA | NA | |
| GSE43194 | GSE43194_E11_ICR_abundance_rep2.txt.gz-set-2 | spiky | NA | NA | NA | NA | |
| GSE33782 | GSE33782_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE98739 | GSE98739_Q7SST_vs_Q111DOP_DEGs_with_fpkm.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE86211 | GSE86211_CmrA_transcriptome_Expression_of_all_genes.xlsx-sheet-PA14vsPJ01dT | other | NA | NA | NA | NA | |
| GSE81007 | GSE81007_cds_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE87635 | GSE87635_CNOT3KO-WT.txt.gz | conservative | NA | NA | NA | NA | |
| GSE77499 | GSE77499_Dd2CQ_Dd2_3D7_isoform_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE66158 | GSE66158_all_genes_FPKM.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE56284 | GSE56284_gene_exp.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE53976 | GSE53976_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE43194 | GSE43194_HH18chick_abundance.txt.gz-set-0 | spiky | NA | NA | NA | NA | |
| GSE43194 | GSE43194_HH18chick_abundance.txt.gz-set-1 | spiky | NA | NA | NA | NA | |
| GSE43194 | GSE43194_HH18chick_abundance.txt.gz-set-2 | bimodal | NA | NA | NA | NA | |
| GSE33782 | GSE33782_isoform_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE98739 | GSE98739_Q7SST_vs_Q111SST_DEGs_with_fpkm.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE77769 | GSE77769_RNA_diff_final.txt.gz | spiky | NA | NA | NA | NA | |
| GSE81007 | GSE81007_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE36005 | GSE36005_emo_gene.diff.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Gene_Rb_24v36.txt.gz | conservative | NA | NA | NA | NA | |
| GSE82210 | GSE82210_cuffdiff_lncOL1KO_vs_Ctrl.gene.fpkm.txt.gz | conservative | NA | NA | NA | NA | |
| GSE83137 | GSE83137_H2_vs_Lanact_pval.csv.gz | other | NA | other | NA | ||
| GSE58586 | GSE58586_RNAseq-PDX-paired-tr-vs-untr_allintensity-filtered.txt.gz | other | NA | NA | NA | NA | |
| GSE49147 | GSE49147_ESC_KO_vs_WT.txt.gz | conservative | NA | NA | NA | NA | |
| GSE36005 | GSE36005_res_gene.diff.gz | conservative | NA | NA | NA | NA | |
| GSE32038 | GSE32038_cds_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Gene_Rb_24v48.txt.gz | conservative | NA | NA | NA | NA | |
| GSE91075 | GSE91075_gene_exp_WT1_KO1.txt.gz | conservative | NA | NA | NA | NA | |
| GSE81007 | GSE81007_isoform_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE49147 | GSE49147_iPS_PF1_vs_PF2.txt.gz | conservative | NA | NA | NA | NA | |
| GSE36005 | GSE36005_sus_gene.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE32038 | GSE32038_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Gene_Rb_36v48.txt.gz | conservative | NA | NA | NA | NA | |
| GSE91075 | GSE91075_gene_exp_WT2_KO2.txt.gz | conservative | NA | NA | NA | NA | |
| GSE77185 | GSE77185_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE74148 | GSE74148_RNA-seq0415.xlsx-set-0 | conservative | NA | NA | NA | NA | |
| GSE74148 | GSE74148_RNA-seq0415.xlsx-set-1 | conservative | NA | NA | NA | NA | |
| GSE74148 | GSE74148_RNA-seq0415.xlsx-set-2 | conservative | NA | NA | NA | NA | |
| GSE74148 | GSE74148_RNA-seq0415.xlsx-set-3 | bimodal | NA | NA | NA | NA | |
| GSE74148 | GSE74148_RNA-seq0415.xlsx-set-4 | bimodal | NA | NA | NA | NA | |
| GSE74148 | GSE74148_RNA-seq0415.xlsx-set-5 | conservative | NA | NA | NA | NA | |
| GSE58609 | GSE58609_MEF_WT_DKO.deseq.txt.gz-set-0 | conservative | NA | NA | NA | NA | |
| GSE58609 | GSE58609_MEF_WT_DKO.deseq.txt.gz-set-1 | conservative | NA | NA | NA | NA | |
| GSE71948 | GSE71948_RNASeqProcessedDESeqData.txt.gz | conservative | NA | other | NA | ||
| GSE49147 | GSE49147_iPS_TTF1_vs_TTF2.txt.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Gene_RbvRv_24.txt.gz | conservative | NA | NA | NA | NA | |
| GSE81007 | GSE81007_promoters.diff.gz | conservative | NA | NA | NA | NA | |
| GSE65321 | GSE65321_RNASeqProcessedDESeqData.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE63750 | GSE63750_chemhigh-batch-result-using-R-DeSeq.csv.gz | bimodal | NA | other | NA | ||
| GSE58405 | GSE58405_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE32038 | GSE32038_isoform_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE73972 | GSE73972_atxvsWT_gene_exp_diff.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Gene_RbvRv_36.txt.gz | conservative | NA | NA | NA | NA | |
| GSE93620 | GSE93620_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE81007 | GSE81007_splicing.diff.gz | conservative | NA | NA | NA | NA | |
| GSE78878 | GSE78878_30Cvs30P_score.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE64854 | GSE64854_cds.diff.gz | conservative | NA | NA | NA | NA | |
| GSE65321 | GSE65321_RNASeqProcessedDESeqData_GSM1631482-GSM1631483.txt.gz | conservative | NA | NA | NA | NA | |
| GSE63555 | GSE63555_Ago2_immunoprecipitation_cuffdiff_fpkm.txt.gz | conservative | NA | NA | NA | NA | |
| GSE63750 | GSE63750_chemlow-batch-result-using-R-DeSeq.csv.gz | other | NA | other | NA | ||
| GSE58405 | GSE58405_isoform_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE53022 | GSE53022_mt_vs_wt.DESeq.txt.gz | conservative | NA | other | NA | ||
| GSE90974 | GSE90974_Cuffdiff_Gene_RbvRv_48.txt.gz | conservative | NA | NA | NA | NA | |
| GSE81007 | GSE81007_tss_group_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE78878 | GSE78878_30CvsN2C_score.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE80433 | GSE80433_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE79286 | GSE79286_CYC2vsWT_Conj-2.5hr_RNA-Seq.xlsx-sheet-gene_exp | bimodal | NA | NA | NA | NA | |
| GSE64854 | GSE64854_cds_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE63555 | GSE63555_Gene_expression_cuffdiff_fpkm.txt.gz | conservative | NA | NA | NA | NA | |
| GSE50557 | GSE50557_rnaseq-lbl1-Cuffdiff_gene_expression.txt.gz | conservative | NA | NA | NA | NA | |
| GSE92989 | GSE92989_Drought_2_days.txt.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Gene_RbvRv_Global.txt.gz | conservative | NA | NA | NA | NA | |
| GSE74929 | GSE74929_ANOVA_gene_rpkm.txt.gz-set-0 | other | NA | NA | NA | NA | |
| GSE74929 | GSE74929_ANOVA_gene_rpkm.txt.gz-set-1 | other | NA | NA | NA | NA | |
| GSE79507 | GSE79507_minipig.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE81100 | GSE81100_old_ARSER_output.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE61336 | GSE61336_results_167_vs_WTL.txt.gz | bimodal | NA | anti-conservative | 0.42 | ||
| GSE78878 | GSE78878_30PvsN2P_score.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE85576 | GSE85576_Supplementary_Table_1.xlsx-sheet-MagohMos2_vs_Control | conservative | NA | NA | NA | NA | |
| GSE84606 | GSE84606_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE79286 | GSE79286_CYC2vsWT_Conj-2hr_RNA-Seq.xlsx-sheet-C2vWT-2hr genes | bimodal | NA | NA | NA | NA | |
| GSE64854 | GSE64854_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE71284 | GSE71284_control_WT2_WT3_C1_C2_vs_truncation_3kb1_3kb2_100kb1_100kb2_CUFFDIFF_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE59290 | GSE59290_ANTI_isoform_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE54246 | GSE54246_Control_vs._4_NQO_Tongue_gene_exp.xlsx.gz | bimodal | NA | NA | NA | NA | |
| GSE52367 | GSE52367_Cuflinks_2338_2339.txt.gz | conservative | NA | NA | NA | NA | |
| GSE51847 | GSE51847_Expression_table_LE-2_x_HR-3.txt.gz | conservative | NA | NA | NA | NA | |
| GSE92989 | GSE92989_Drought_3_days.txt.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Gene_Rv_24v36.txt.gz | conservative | NA | NA | NA | NA | |
| GSE93870 | GSE93870_processed_file.xlsx-sheet-293FT_ZIKV.Vs.293FT_Control.DES | spiky | NA | anti-conservative | 0.88 | ||
| GSE93870 | GSE93870_processed_file.xlsx-sheet-BJ_ZIKV.Vs.BJ_Control.DESeq_Ana | spiky | NA | anti-conservative | 0.96 | ||
| GSE93870 | GSE93870_processed_file.xlsx-sheet-CHME_ZIKV.Vs.CHME_Control.DESeq | spiky | NA | anti-conservative | 0.81 | ||
| GSE93870 | GSE93870_processed_file.xlsx-sheet-THP1_ZIKV.Vs.THP1_Control.DESeq | spiky | NA | anti-conservative | 0.48 | ||
| GSE93870 | GSE93870_processed_file.xlsx-sheet-ZIKV.Vs.Control.DESeq_Analysis_ | spiky | NA | spiky | NA | ||
| GSE80597 | GSE80597_Processed_data_cuffdiff_output.txt.gz | conservative | NA | NA | NA | NA | |
| GSE61336 | GSE61336_results_167_vs_WTZ.txt.gz | bimodal | NA | anti-conservative | 0.41 | ||
| GSE83406 | GSE83406_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE78878 | GSE78878_N2CvsN2P_score.txt.gz | spiky | NA | NA | NA | NA | |
| GSE80301 | GSE80301_col_rep1_mom1_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE79286 | GSE79286_CYC2vsWT_Conj-3.5hr_RNA-Seq.xlsx-sheet-gene_exp | bimodal | NA | NA | NA | NA | |
| GSE64854 | GSE64854_isoform_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE61033 | GSE61033_DE_exonWT_vs_exonKOnoRN.txt.gz | bimodal | NA | anti-conservative | 0.71 | ||
| GSE64455 | GSE64455_cuffdiff_out.txt.gz | conservative | NA | NA | NA | NA | |
| GSE66232 | GSE66232_B-ALL_Cuffdiff_Trim33.1271_rep1.txt.gz | conservative | NA | NA | NA | NA | |
| GSE59290 | GSE59290_MIR_isoform_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE57680 | GSE57680_RPKM_luminal_epithelium.txt.gz | conservative | NA | NA | NA | NA | |
| GSE32038 | GSE32038_tss_group_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Gene_Rv_24v48.txt.gz | conservative | NA | NA | NA | NA | |
| GSE93206 | GSE93206_Processed_data_files.xlsx-set-0 | conservative | NA | NA | NA | NA | |
| GSE93206 | GSE93206_Processed_data_files.xlsx-set-1 | spiky | NA | NA | NA | NA | |
| GSE77037 | GSE77037_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE61336 | GSE61336_results_WTL_vs_WTZ.txt.gz | conservative | NA | anti-conservative | 0.99 | ||
| GSE76533 | GSE76533_leaf.gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE83555 | GSE83555_WT-KO-mm9-gene_exp.txt.gz | conservative | NA | NA | NA | NA | |
| GSE80301 | GSE80301_col_rep1_nrpe1_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE79286 | GSE79286_CYC2vsWT_Conj-3hr_RNA-Seq.xlsx | bimodal | NA | NA | NA | NA | |
| GSE64854 | GSE64854_promoters.diff.gz | conservative | NA | NA | NA | NA | |
| GSE61033 | GSE61033_DE_intronWT_vs_intronKOnoRN.txt.gz | bimodal | NA | anti-conservative | 0.86 | ||
| GSE57254 | GSE57254_Control_CELF1KD_abundances.txt.gz | conservative | NA | NA | NA | NA | |
| GSE66232 | GSE66232_B-ALL_Cuffdiff_Trim33.1271_rep2.txt.gz | conservative | NA | NA | NA | NA | |
| GSE52201 | GSE52201_RNAseq_processed_data_L_D_siLSD1.txt.gz | conservative | NA | NA | NA | NA | |
| GSE57680 | GSE57680_RPKM_stroma.txt.gz | conservative | NA | NA | NA | NA | |
| GSE58360 | GSE58360_Cebpa.txt.gz | conservative | NA | NA | NA | NA | |
| GSE50424 | GSE50424_Adipose.tsv.gz | conservative | NA | NA | NA | NA | |
| GSE52038 | GSE52038_Supplementary-table-1-date11021.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Gene_Rv_36v48.txt.gz | conservative | NA | NA | NA | NA | |
| GSE76533 | GSE76533_seedling.gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE80301 | GSE80301_col_rep1_pial1pial2_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE64854 | GSE64854_splicing.diff.gz | conservative | NA | NA | NA | NA | |
| GSE70544 | GSE70544_Normoxia_vs_Hypoxia_Gencode_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE58359 | GSE58359_HOXA9.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE50424 | GSE50424_Liver.tsv.gz | conservative | NA | NA | NA | NA | |
| GSE42381 | GSE42381_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Gene_Sb_24v36.txt.gz | conservative | NA | NA | NA | NA | |
| GSE80301 | GSE80301_col_rep2_mom1_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE64854 | GSE64854_tss_group_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE70544 | GSE70544_Normoxia_vs_Hypoxia_Rinn_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE58379 | GSE58379_RBM47_alternative_splicing.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE54982 | GSE54982_Differential_Gene_Expression_Summary.xlsx.gz-sheet-C1_WtE8.0_Vs_Wt10.0 | bimodal | NA | NA | NA | NA | |
| GSE54982 | GSE54982_Differential_Gene_Expression_Summary.xlsx.gz-sheet-C2_Wt_VS_ Tc E8.0 | bimodal | NA | NA | NA | NA | |
| GSE54982 | GSE54982_Differential_Gene_Expression_Summary.xlsx.gz-sheet-C3_Wt_VS_Tc_E10.0 | bimodal | NA | NA | NA | NA | |
| GSE54982 | GSE54982_Differential_Gene_Expression_Summary.xlsx.gz-sheet-C4_TcE8.0_VS_TcE10.0 | bimodal | NA | NA | NA | NA | |
| GSE37111 | GSE37111_clip.txt.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Gene_Sb_24v48.txt.gz | conservative | NA | NA | NA | NA | |
| GSE90615 | GSE90615_DifferentialExpression.xlsx-sheet-Sfrp2_12dP-MI_v Vehicle_12dP-MI | other | NA | NA | NA | NA | |
| GSE90615 | GSE90615_DifferentialExpression.xlsx-sheet-1dP-MI_vs_Vehicle_12dP-MI | uniform | NA | NA | NA | NA | |
| GSE90615 | GSE90615_DifferentialExpression.xlsx-sheet-1dP-MI_vs_Sfrp2_12dP-MI | uniform | NA | NA | NA | NA | |
| GSE80301 | GSE80301_col_rep2_mom1pial2_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE71943 | GSE71943_KO_vs_WT_diffGenes.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE70544 | GSE70544_Vehicle_vs_Cytokine_Gencode_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE66716 | GSE66716_Lim_et_al_14-3-3zKOWAT_Processed_data_Cuffdiff.xlsx | conservative | NA | NA | NA | NA | |
| GSE67674 | GSE67674_RNA-seq_analysis_AADMSOvsAAGSK-J4.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE54984 | GSE54984_Differential_Gene_Expression_Summary.xlsx.gz-sheet-ESCs_VS_EBDay4 | bimodal | NA | NA | NA | NA | |
| GSE54984 | GSE54984_Differential_Gene_Expression_Summary.xlsx.gz-sheet-EBDay4_ControlVSBrachyuryKD | bimodal | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Gene_Sb_36v48.txt.gz | conservative | NA | NA | NA | NA | |
| GSE80301 | GSE80301_col_rep2_pial2_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE71281 | GSE71281_G53_veh_vs_SAA_Th17_CuffDiff_Gene_Differential.txt.gz | conservative | NA | NA | NA | NA | |
| GSE70544 | GSE70544_Vehicle_vs_Cytokine_Rinn_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE67554 | GSE67554_TAG5_Cuffdiff_gene_differential_expression_testing.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE98541 | GSE98541_RPE1_diff_expression_WT_SAFA.xlsx | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Gene_SbvSv_24.txt.gz | conservative | NA | NA | NA | NA | |
| GSE76232 | GSE76232_isoforms.diff_exp_ann_result.xls.gz | conservative | NA | NA | NA | NA | |
| GSE67554 | GSE67554_ZG14_Cuffdiff_gene_differential_expression_testing.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE61851 | GSE61851_genelist-sortedbypadj.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE44665 | GSE44665_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Gene_SbvSv_36.txt.gz | conservative | NA | NA | NA | NA | |
| GSE81100 | GSE81100_youngARSER_output.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE76151 | GSE76151_A1_isoform_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE72917 | GSE72917_DP1_WTvKO.txt.gz | conservative | NA | NA | NA | NA | |
| GSE70860 | GSE70860_DEaxons.csv.gz | spiky | NA | anti-conservative | 0.21 | ||
| GSE68102 | GSE68102_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE63570 | GSE63570_Rec_siRNA_RNA-seq.txt.gz | conservative | NA | NA | NA | NA | |
| GSE65542 | GSE65542_pnky_kd.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE40948 | GSE40948_MEF_vs_ESC_2replicates_expression.tsv.gz | bimodal | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Gene_SbvSv_48.txt.gz | conservative | NA | NA | NA | NA | |
| GSE81123 | GSE81123_Poplar_RNAseq_data.ods.txt.gz | conservative | NA | NA | NA | NA | |
| GSE71988 | GSE71988_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE76151 | GSE76151_A2B1A1_isoform_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE71609 | GSE71609_2015_MZT.txt.gz-set-0 | bimodal | NA | NA | NA | NA | |
| GSE71609 | GSE71609_2015_MZT.txt.gz-set-1 | conservative | NA | NA | NA | NA | |
| GSE71609 | GSE71609_2015_MZT.txt.gz-set-2 | conservative | NA | NA | NA | NA | |
| GSE71609 | GSE71609_2015_MZT.txt.gz-set-3 | bimodal | NA | NA | NA | NA | |
| GSE71609 | GSE71609_2015_MZT.txt.gz-set-4 | bimodal | NA | NA | NA | NA | |
| GSE69311 | GSE69311_deseq_diff_genes.csv.gz | bimodal | NA | anti-conservative | 0.79 | ||
| GSE72917 | GSE72917_DP2_WTvKO.txt.gz | conservative | NA | NA | NA | NA | |
| GSE70860 | GSE70860_DEsoma.csv.gz | other | NA | other | NA | ||
| GSE65542 | GSE65542_ptbp1_kd.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE58910 | GSE58910_SenescentAstrocytesDEanalysis_v2.csv.gz | bimodal | NA | anti-conservative | 0.69 | ||
| GSE44668 | GSE44668_gene_exp_diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Gene_SbvSv_Global.txt.gz | conservative | NA | NA | NA | NA | |
| GSE76151 | GSE76151_A2B1_isoform_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE65142 | GSE65142_HYBP.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE76190 | GSE76190_OtA8535_vs_OtA8538_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE63838 | GSE63838_cds_exp_diff_2D.txt.gz | conservative | NA | NA | NA | NA | |
| GSE72917 | GSE72917_KO_DP1vDP2.txt.gz | conservative | NA | NA | NA | NA | |
| GSE52153 | GSE52153_wtDMSOvsczt-1DMSO.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE40228 | GSE40228_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Gene_Sv_24v36.txt.gz | conservative | NA | NA | NA | NA | |
| GSE93021 | GSE93021_DSP-TP_LL-YY_FPKM.xlsx-sheet-DSP-TP_VS_LL-YY | conservative | NA | NA | NA | NA | |
| GSE93021 | GSE93021_DSP-TP_LL-YY_FPKM.xlsx-sheet-DSP-TP | conservative | NA | NA | NA | NA | |
| GSE93021 | GSE93021_DSP-TP_LL-YY_FPKM.xlsx-sheet-LL-YY | conservative | NA | NA | NA | NA | |
| GSE79680 | GSE79680_Heat_shock_table.csv.gz | conservative | NA | NA | NA | NA | |
| GSE76190 | GSE76190_OtA8536_vs_OtA8539_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE72917 | GSE72917_WT_DP1vDP2.txt.gz | conservative | NA | NA | NA | NA | |
| GSE69175 | GSE69175_gene_exp.txt.gz | conservative | NA | NA | NA | NA | |
| GSE60822 | GSE60822_cuffdiff.control.ablation.tab.gz | conservative | NA | NA | NA | NA | |
| GSE53789 | GSE53789_GFP_FACS_x_GFP_LCM-not_significant.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE51144 | GSE51144_all_exons.txt.gz | other | NA | NA | NA | NA | |
| GSE98387 | GSE98387_gene_exp.txt.gz | other | NA | other | NA | ||
| GSE90974 | GSE90974_Cuffdiff_Gene_Sv_24v48.txt.gz | conservative | NA | NA | NA | NA | |
| GSE52911 | GSE52911_gene_exp.txt.gz | conservative | NA | NA | NA | NA | |
| GSE76683 | GSE76683_shHOXA7gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE79779 | GSE79779_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE65142 | GSE65142_YH.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE76190 | GSE76190_OtA8537_vs_OtA8540_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE60822 | GSE60822_cuffdiff.control.induction.tab.gz | conservative | NA | NA | NA | NA | |
| GSE53789 | GSE53789_GFP_FACS_x_WT_FACS-not_significant.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE41487 | GSE41487_ResultsContr123vsRas123Multiple.xls.gz-sheet-RawData Contr123 vs Ras123 | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Gene_Sv_36v48.txt.gz | conservative | NA | NA | NA | NA | |
| GSE80237 | GSE80237_Supplementary_Data_1.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE76682 | GSE76682_EB_AM580gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE75878 | GSE75878_cds.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE65987 | GSE65987_FPKM_for_MEFs.txt.gz | conservative | NA | NA | NA | NA | |
| GSE76190 | GSE76190_OtA8538_vs_OtA8541_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE60822 | GSE60822_cuffdiff.induction.ablation.tab.gz | conservative | NA | NA | NA | NA | |
| GSE53789 | GSE53789_GFP_LCM_gt_GFP_FACS_gene_exp_with_zeros.diff.txt.gz | other | NA | NA | NA | NA | |
| GSE50203 | GSE50203_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE41487 | GSE41487_ResultsContr123vsRas12Multiple.xls.gz-sheet-RawData Contr123 vs Ras12 | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Gene_SvvRv_24.txt.gz | conservative | NA | NA | NA | NA | |
| GSE86323 | GSE86323_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE85308 | GSE85308_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE75878 | GSE75878_cds_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE76190 | GSE76190_OtA8539_vs_OtA8542_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE71164 | GSE71164_SCR-static_vs_SCR-FSS.tabular.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE53789 | GSE53789_GFP_LCM_gt_WT_FACS_gene_exp_with_zeros.diff.txt.gz | other | NA | NA | NA | NA | |
| GSE50203 | GSE50203_isoform_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE56575 | GSE56575_cds_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE41090 | GSE41090_WT_vs_KO_full_genes.tab.txt.gz | conservative | NA | NA | NA | NA | |
| GSE39812 | GSE39812_FT_result_transcript_summary.tsv.txt.gz | conservative | NA | NA | NA | NA | |
| GSE94967 | GSE94967_cds_exp.diff_A_B_CDS.diff.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Gene_SvvRv_36.txt.gz | conservative | NA | NA | NA | NA | |
| GSE69205 | GSE69205_gene_exp.txt.gz | conservative | NA | NA | NA | NA | |
| GSE72820 | GSE72820_MDA1N-1P_RPKM.xlsx.gz | conservative | NA | NA | NA | NA | |
| GSE85308 | GSE85308_processed_data.txt.gz | conservative | NA | NA | NA | NA | |
| GSE75878 | GSE75878_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE76190 | GSE76190_OtA8540_vs_OtA8543_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE71164 | GSE71164_SCR-static_vs_SH-EZH2-static.tabular.txt.gz | conservative | NA | NA | NA | NA | |
| GSE53789 | GSE53789_GFP_LCM_x_GFP_FACS-not_significant.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE56097 | GSE56097_Cufflinks_CuffDiff_gene_exp.txt.gz | conservative | NA | NA | NA | NA | |
| GSE49097 | GSE49097_BetweenGenotypes_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE84158 | GSE84158_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE94967 | GSE94967_gene_exp.diff_A_B_GENE.diff.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Gene_SvvRv_48.txt.gz | conservative | NA | NA | NA | NA | |
| GSE62040 | GSE62040_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE72820 | GSE72820_MDA27N-27P_RPKM.xlsx.gz | conservative | NA | NA | NA | NA | |
| GSE75878 | GSE75878_isoform_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE70068 | GSE70068_GM_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE72560 | GSE72560_Enteric_Glia.txt.gz | conservative | NA | NA | NA | NA | |
| GSE53789 | GSE53789_GFP_LCM_x_WT_FACS-not_significant.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE49097 | GSE49097_CompareAll_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE39812 | GSE39812_TB_result_transcript_summary.tsv.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE94967 | GSE94967_isoform_exp.diff_A_B_ISOFORM.diff.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Gene_SvvRv_Global.txt.gz | conservative | NA | NA | NA | NA | |
| GSE77395 | GSE77395_A_OE_air_vs_Col_air.diff.gz | conservative | NA | NA | NA | NA | |
| GSE72820 | GSE72820_MDA2N-2P_RPKM.xlsx.gz | conservative | NA | NA | NA | NA | |
| GSE70815 | GSE70815_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE76992 | GSE76992_GFP_vs_p16.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE74868 | GSE74868_ETS2_T72D_OE_Epi_RNAseq.txt.gz | conservative | NA | NA | NA | NA | |
| GSE60701 | GSE60701_AL_R_vs_AL_L.diff_expressed_transcripts.tsv.gz | bimodal | NA | NA | NA | NA | |
| GSE49097 | GSE49097_Within_A_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE94967 | GSE94967_tss_group_exp.diff_A_B_TSS.diff.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Transcript_Rb_24v36.txt.gz | conservative | NA | NA | NA | NA | |
| GSE77395 | GSE77395_col_air_vs_ethylene.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE72820 | GSE72820_MDA31N-31P_RPKM.xlsx.gz | conservative | NA | NA | NA | NA | |
| GSE75833 | GSE75833_DESeq-processed_FB.control_vs_FB.25mkM.4HT.txt.gz | conservative | NA | NA | NA | NA | |
| GSE77256 | GSE77256_Cuffdiff_Anagen_HFSCs.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE70068 | GSE70068_TNF_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE60701 | GSE60701_ChL_R_vs_AL_R.diff_expressed_transcripts.tsv.gz | bimodal | NA | NA | NA | NA | |
| GSE49097 | GSE49097_Within_B_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE39605 | GSE39605_All_KOvsWT_filtered_final.xlsx.gz-sheet-All_KOvsWT_filtered | conservative | NA | other | NA | ||
| GSE39652 | GSE39652_20111201c2Day3_gene_exp.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Transcript_Rb_24v48.txt.gz | conservative | NA | NA | NA | NA | |
| GSE87808 | GSE87808_diffExp_Slc7a5_Cerebellum_allGenes.txt.gz | spiky | NA | anti-conservative | 0.83 | ||
| GSE79412 | GSE79412_amiFPSa_gene_exp_diff.xlsx-sheet-Hoja1 | conservative | NA | NA | NA | NA | |
| GSE73192 | GSE73192_cds_chromosome_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE72820 | GSE72820_MDA33N-33P_RPKM.xlsx.gz | conservative | NA | NA | NA | NA | |
| GSE84786 | GSE84786_isoform_exp.xlsx-sheet-isoform_exp | conservative | NA | NA | NA | NA | |
| GSE84786 | GSE84786_isoform_exp.xlsx-sheet-Fold change | conservative | NA | NA | NA | NA | |
| GSE75878 | GSE75878_tss_group_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE77256 | GSE77256_Cuffdiff_Telogen_HFSCs.txt.gz | conservative | NA | NA | NA | NA | |
| GSE70108 | GSE70108_G263_CuffDiff_WTvsDDX5Tko.tabular.txt.gz | conservative | NA | NA | NA | NA | |
| GSE62909 | GSE62909_Differential_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE72178 | GSE72178_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE53789 | GSE53789_WT_FACS_x_GFP_FACS-not_significant.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE61031 | GSE61031_DE_polyaWT_vs_polyaKO.txt.gz | bimodal | NA | anti-conservative | 0.84 | ||
| GSE60701 | GSE60701_ChL_R_vs_ChL_L.diff_expressed_transcripts.tsv.gz | bimodal | NA | NA | NA | NA | |
| GSE49097 | GSE49097_Within_WT_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE57517 | GSE57517_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE56058 | GSE56058_differentialExpressionGenes_RD19.txt.gz | other | NA | NA | NA | NA | |
| GSE39652 | GSE39652_20111201c2LZ_gene_exp.txt.gz | conservative | NA | NA | NA | NA | |
| GSE83217 | GSE83217_Processed_Matrix_FPKM.xlsx-sheet-siScramble_vs_siHdac4 | conservative | NA | NA | NA | NA | |
| GSE83217 | GSE83217_Processed_Matrix_FPKM.xlsx-sheet-siScramble_vs_siBdnf | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Transcript_Rb_36v48.txt.gz | conservative | NA | NA | NA | NA | |
| GSE84308 | GSE84308_RNA.txt.gz | spiky | NA | NA | NA | NA | |
| GSE76287 | GSE76287_rosettes_col0vdko_tair.txt.gz | conservative | NA | NA | NA | NA | |
| GSE72820 | GSE72820_MDA34N-34P_RPKM.xlsx.gz | conservative | NA | NA | NA | NA | |
| GSE86077 | GSE86077_N2_EVvs28_D4.diff.gz | conservative | NA | NA | NA | NA | |
| GSE77256 | GSE77256_Cuffdiff_all_HFSCs.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE72830 | GSE72830_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE70108 | GSE70108_G340_CuffDiff_WTvsRORgko.tabular.txt.gz | conservative | NA | NA | NA | NA | |
| GSE70068 | GSE70068_UT_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE53789 | GSE53789_WT_FACS_x_GFP_LCM-not_significant.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE39652 | GSE39652_20111201c2Pach_gene_exp.txt.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Transcript_RbvRv_24.txt.gz | conservative | NA | NA | NA | NA | |
| GSE76287 | GSE76287_seedling_col0vdko_tair.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE72820 | GSE72820_MDA3N-3P_RPKM.xlsx.gz | conservative | NA | NA | NA | NA | |
| GSE86077 | GSE86077_glp-1_EVvs28_D4.diff.gz | conservative | NA | NA | NA | NA | |
| GSE84798 | GSE84798_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE80972 | GSE80972_frm_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE70785 | GSE70785_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE72830 | GSE72830_tss_group_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE72787 | GSE72787_deseq2_closed_vs_open.tsv.gz | spiky | NA | NA | NA | NA | |
| GSE69855 | GSE69855_gene_exp_ResvResVag.txt.gz | conservative | NA | NA | NA | NA | |
| GSE53789 | GSE53789_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE52080 | GSE52080_processed_data.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE55596 | GSE55596_LOLOdiff_nonovel.txt.gz | conservative | NA | NA | NA | NA | |
| GSE39652 | GSE39652_20111201c2PreMeiotic_gene_exp.txt.gz | conservative | NA | NA | NA | NA | |
| GSE97525 | GSE97525_Dm_AKHR_F2_RNA-seq.xlsx-sheet-PP vs WT | other | NA | other | NA | ||
| GSE97525 | GSE97525_Dm_AKHR_F2_RNA-seq.xlsx-sheet-PM vs WT | other | NA | other | NA | ||
| GSE97525 | GSE97525_Dm_AKHR_F2_RNA-seq.xlsx-sheet-PP vs PM | other | NA | other | NA | ||
| GSE90974 | GSE90974_Cuffdiff_Transcript_RbvRv_36.txt.gz | conservative | NA | NA | NA | NA | |
| GSE83601 | GSE83601_All_genes_in_controls_and_PTSD.txt.gz | conservative | NA | NA | NA | NA | |
| GSE84529 | GSE84529_Paired_comparison_of_three_sections_Cuffdiff.xlsx-sheet-Comparison_0-5_mm_vs_15-20_mm | bimodal | NA | NA | NA | NA | |
| GSE84529 | GSE84529_Paired_comparison_of_three_sections_Cuffdiff.xlsx-sheet-Comparison_0-5_mm_vs_30-35_mm | bimodal | NA | NA | NA | NA | |
| GSE84529 | GSE84529_Paired_comparison_of_three_sections_Cuffdiff.xlsx-sheet-Comparison_30-35_mm_vs_15-20_mm | conservative | NA | NA | NA | NA | |
| GSE72947 | GSE72947_Dm_sir2_RNA-seq.xlsx-sheet-Analyzed Genes | conservative | NA | NA | NA | NA | |
| GSE64747 | GSE64747_deseq_comp_DMSO_minus_TEX_vs_compound59_minus_TEX_with_annot_and_counts.txt.gz | conservative | NA | NA | NA | NA | |
| GSE72321 | GSE72321_annotated_diffana_6-OHDA-6-OHDA_En.xlsx | conservative | NA | other | NA | ||
| GSE69855 | GSE69855_gene_exp_ResvSham.txt.gz | conservative | NA | NA | NA | NA | |
| GSE55596 | GSE55596_alldiff_nonovel.txt.gz | conservative | NA | NA | NA | NA | |
| GSE85627 | GSE85627_mDUX-mESC.xlsx.gz-sheet-Transient | spiky | NA | other | NA | ||
| GSE90974 | GSE90974_Cuffdiff_Transcript_RbvRv_48.txt.gz | conservative | NA | NA | NA | NA | |
| GSE81191 | GSE81191_Cuffdiff_Isoform.txt.gz | conservative | NA | NA | NA | NA | |
| GSE86521 | GSE86521_DESeq_out_KO_vs_WT.txt.gz | bimodal | NA | anti-conservative | 0.74 | ||
| GSE72321 | GSE72321_annotated_diffana_gain-of-function_En1-ipsi-contra.xlsx | conservative | NA | spiky | NA | ||
| GSE71153 | GSE71153_projectLindholmPerry_USDA0001AL_master_list.txt.gz | spiky | NA | NA | NA | NA | |
| GSE69900 | GSE69900_control-CBD16H.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE51119 | GSE51119_IBH1KD_vs_Col_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Transcript_RbvRv_Global.txt.gz | conservative | NA | NA | NA | NA | |
| GSE81191 | GSE81191_Cuffdiff_transcript.txt.gz | conservative | NA | NA | NA | NA | |
| GSE76487 | GSE76487_shMBNL1_gene_exp_diff.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE72321 | GSE72321_annotated_diffana_loss-of-function_En1LacZ-WT.xlsx | conservative | NA | spiky | NA | ||
| GSE69900 | GSE69900_control-tamoxifen48H.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE62633 | GSE62633_Differential_expression_table.txt.gz | conservative | NA | NA | NA | NA | |
| GSE46046 | GSE46046_GenesTable.txt.gz | spiky | NA | anti-conservative | 0.93 | ||
| GSE51119 | GSE51119_IBH1ox_vs_Col_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE40218 | GSE40218_processed_DESeq.txt.gz | bimodal | NA | anti-conservative | 0.89 | ||
| GSE90974 | GSE90974_Cuffdiff_Transcript_Rv_24v36.txt.gz | conservative | NA | NA | NA | NA | |
| GSE87532 | GSE87532_gene_exp.diff.name.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE84370 | GSE84370_APC_0h_vs_1h_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE86248 | GSE86248_shControl-vs-shPaf1-gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE60691 | GSE60691_processed_data_aso_wild_type.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE72341 | GSE72341_DEseq_results.xlsx | bimodal | NA | spiky | NA | ||
| GSE62760 | GSE62760_Acute_Cuffdiff_DGE.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE59781 | GSE59781_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE61566 | GSE61566_cds.diff.gz | conservative | NA | NA | NA | NA | |
| GSE51119 | GSE51119_bHLH159KD_vs_Col_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE36866 | GSE36866_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE97258 | GSE97258_differential_expression.xls.gz-sheet-Sheet1 | bimodal | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Transcript_Rv_24v48.txt.gz | conservative | NA | NA | NA | NA | |
| GSE84370 | GSE84370_APC_0h_vs_2h_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE76396 | GSE76396_isoform_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE86248 | GSE86248_shControl-vs-shPhf5a-gene_exp_1_.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE69556 | GSE69556_cds_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE60691 | GSE60691_processed_data_krkr_sumo_mut.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE62760 | GSE62760_Chronic_Cuffdiff_DGE.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE51119 | GSE51119_bHLH159ox_vs_Col_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE49581 | GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-0 | bimodal | NA | NA | NA | NA | |
| GSE49581 | GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-1 | bimodal | NA | NA | NA | NA | |
| GSE49581 | GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-2 | bimodal | NA | NA | NA | NA | |
| GSE49581 | GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-3 | bimodal | NA | NA | NA | NA | |
| GSE49581 | GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-4 | conservative | NA | NA | NA | NA | |
| GSE49581 | GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-5 | bimodal | NA | NA | NA | NA | |
| GSE49581 | GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-6 | bimodal | NA | NA | NA | NA | |
| GSE49581 | GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-7 | bimodal | NA | NA | NA | NA | |
| GSE49581 | GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-8 | bimodal | NA | NA | NA | NA | |
| GSE49587 | GSE49587_L2_L3P1_2_DEUtable.txt.gz | other | NA | NA | NA | NA | |
| GSE98650 | GSE98650_mb1_hdac3_cuffdiff_out.txt.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Transcript_Rv_36v48.txt.gz | conservative | NA | NA | NA | NA | |
| GSE93866 | GSE93866_IDOE_GENE_EXPRESSION.xlsx | conservative | NA | NA | NA | NA | |
| GSE70699 | GSE70699_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE68460 | GSE68460_WSVSBS_gene_diff.xls.gz-sheet-Sheet1 | conservative | NA | NA | NA | NA | |
| GSE56122 | GSE56122_IFN-gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE63884 | GSE63884_gene_exp.diff_cenpk_imx372_aerobic.txt.gz | uniform | NA | NA | NA | NA | |
| GSE61566 | GSE61566_cds_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE46502 | GSE46502_diff_gene_exp_PR_all.xlsx.gz-sheet-gene_exp.diff | conservative | NA | NA | NA | NA | |
| GSE49587 | GSE49587_L312hr_L3P1_2_DEUtable.txt.gz | other | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Transcript_Sb_24v36.txt.gz | conservative | NA | NA | NA | NA | |
| GSE95006 | GSE95006_RNA-seq_Summary.xls.gz-sheet-Trip_delta_vs_J-set-0 | other | NA | NA | NA | NA | |
| GSE95006 | GSE95006_RNA-seq_Summary.xls.gz-sheet-Trip_delta_vs_J-set-1 | other | NA | NA | NA | NA | |
| GSE72712 | GSE72712_ESCd_40-70_over_ESCd_lt40.cuffdiff.xlsx-sheet-EST-d_40-70_over_EST-d_lt40 | conservative | NA | NA | NA | NA | |
| GSE65337 | GSE65337_Nfix_KO_vs_WT_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE68460 | GSE68460_gene_exp.xls.gz-sheet-Sheet1 | conservative | NA | NA | NA | NA | |
| GSE65039 | GSE65039_gene_exp1.txt.gz | conservative | NA | NA | NA | NA | |
| GSE63226 | GSE63226_WRR+vsWRR-.xls.gz | conservative | NA | NA | NA | NA | |
| GSE61566 | GSE61566_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE50156 | GSE50156_WT_36oC_15min_AND_WT_24oC.txt.gz | conservative | NA | NA | NA | NA | |
| GSE47062 | GSE47062_KO_vs_WT.txt.gz | conservative | NA | NA | NA | NA | |
| GSE90974 | GSE90974_Cuffdiff_Transcript_Sb_24v48.txt.gz | conservative | NA | NA | NA | NA | |
| GSE72712 | GSE72712_ESCd_40-70_over_ESCu.cuffdiff.xlsx-sheet-EST-d_40-70_over_EST-u.cuffdiff | conservative | NA | NA | NA | NA | |
| GSE77304 | GSE77304_gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE78506 | GSE78506_dmso_vs_ca_24Hour_geneExp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE66547 | GSE66547_20150828-oocyteMut_vs_oocyteWt-deResults.xlsx-sheet-Genes | conservative | NA | NA | NA | NA | |
| GSE56122 | GSE56122_LPS-gene_exp.diff.gz | conservative | NA | NA | NA | NA | |
| GSE50156 | GSE50156_mas5D_AND_WT_24oC.txt.gz | conservative | NA | NA | NA | NA | |
| GSE37703 | GSE37703_hiseq_cuffdiff_cds_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE37703 | GSE37703_hiseq_cuffdiff_cds.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE37703 | GSE37703_hiseq_cuffdiff_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE37703 | GSE37703_hiseq_cuffdiff_isoform_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE37703 | GSE37703_hiseq_cuffdiff_promoters.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE37703 | GSE37703_hiseq_cuffdiff_splicing.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE37703 | GSE37703_hiseq_cuffdiff_tss_group_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE37703 | GSE37703_miseq_cuffdiff_cds_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE37703 | GSE37703_miseq_cuffdiff_cds.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE37703 | GSE37703_miseq_cuffdiff_gene_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE37703 | GSE37703_miseq_cuffdiff_isoform_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE37703 | GSE37703_miseq_cuffdiff_promoters.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE37703 | GSE37703_miseq_cuffdiff_splicing.diff.gz | conservative | NA | NA | NA | NA | |
| GSE37703 | GSE37703_miseq_cuffdiff_tss_group_exp.diff.gz | bimodal | NA | NA | NA | NA | |
| GSE40187 | GSE40187_gene_exp_diff_Control_NXD30001_fromtophat120_cufflinks102_c0_081612.txt.gz | conservative | NA | NA | NA | NA | |
| GSE40187 | GSE40187_gene_exp_diff_MG1_MG2_fromtophat120_cufflinks102_c0_081612.txt.gz | conservative | NA | NA | NA | NA | |
| GSE44233 | GSE44233_processed_data.txt.gz | spiky | NA | anti-conservative | 0.72 | ||
| GSE50198 | GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-0 | bimodal | NA | anti-conservative | 0.66 | ||
| GSE58052 | GSE58052_N.winogradskyi_co-culture_over_single-culture.txt.gz | spiky | NA | NA | NA | NA | |
| GSE59705 | GSE59705_DEXseqresultstable.txt.gz | other | NA | NA | NA | NA | |
| GSE63161 | GSE63161_diff-Gene-list.txt.gz | spiky | NA | NA | NA | NA | |
| GSE66767 | GSE66767_CD34_cord_blood.EET.txt.gz | spiky | NA | NA | NA | NA | |
| GSE66767 | GSE66767_U937.EET.txt.gz | spiky | NA | NA | NA | NA | |
| GSE67654 | GSE67654_RNA-seq.xlsx.gz-sheet-Sheet1-set-0 | other | NA | NA | NA | NA | |
| GSE67654 | GSE67654_RNA-seq.xlsx.gz-sheet-Sheet1-set-1 | other | NA | NA | NA | NA | |
| GSE68176 | GSE68176_Camfl1.gene_exp.diff.gz | spiky | NA | NA | NA | NA | |
| GSE72860 | GSE72860_RNA-seq_log2fdc.txt.gz | spiky | NA | anti-conservative | 0.64 | ||
| GSE72860 | GSE72860_RRBS_CpG_methylation_call.txt.gz | bimodal | NA | NA | NA | NA | |
| GSE78711 | GSE78711_gene.exp.all.txt.gz | spiky | NA | NA | NA | NA | |
| GSE84875 | GSE84875_human_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE84875 | GSE84875_mouse_gene_exp.diff.txt.gz | conservative | NA | NA | NA | NA | |
| GSE86239 | GSE86239_ETS2shRNA_gene_exp.diff.gz | spiky | NA | NA | NA | NA | |
| GSE91001 | GSE91001_Galaxy255-AveragedPerCRNAseqData.tabular.txt.gz | spiky | NA | NA | NA | NA | |
| GSE91001 | GSE91001_PerC_RNAseq_averageddata.xls.gz-sheet-diffexp_rerun | spiky | NA | NA | NA | NA | |
| GSE83736 | GSE83736_DESeq2.Vav.KO.C_vs_Vav.WT.C.txt.gz | anti-conservative | 0.52 | anti-conservative | 0.30 | ||
| GSE63707 | GSE63707_DEXSeqResults_AretIR_03d_vs_IFMWT_03d.txt.gz | anti-conservative | 0.67 | NA | NA | NA | |
| GSE51645 | GSE51645_DE_processed_data.txt.gz | anti-conservative | 0.76 | NA | NA | NA | |
| GSE97406 | GSE97406_CRP_K100Q_vs_CRP_Control.csv.gz-set-0 | anti-conservative | 0.01 | NA | NA | NA | |
| GSE97406 | GSE97406_CRP_K100Q_vs_CRP_Control.csv.gz-set-1 | anti-conservative | 0.02 | NA | NA | NA | |
| GSE83736 | GSE83736_DESeq2.Vav.WTvsKO.StimulatedInteractions.txt.gz | anti-conservative | 0.56 | anti-conservative | 0.32 | ||
| GSE63707 | GSE63707_DEXSeqResults_AretIR_03d_vs_salm_ko.txt.gz | anti-conservative | 0.59 | NA | NA | NA | |
| GSE67834 | GSE67834_DESeq2_genes_diffexp_by_fc_mTECs_vs_sp-DCs.csv.gz | anti-conservative | 0.29 | anti-conservative | 0.13 | ||
| GSE70290 | GSE70290_PV_Transcripts.txt.gz | anti-conservative | 0.01 | NA | NA | NA | |
| GSE63707 | GSE63707_DEXSeqResults_AretIR_30h_vs_IFMWT_30h.txt.gz | anti-conservative | 0.69 | NA | NA | NA | |
| GSE67834 | GSE67834_DESeq2_genes_diffexp_by_fc_mTECs_vs_t-DCs.csv.gz | anti-conservative | 0.27 | anti-conservative | 0.11 | ||
| GSE87365 | GSE87365_gene_exp_diff_fc_yes_reg_Fetal_stem_cells_and_FACS_sort_vs_Fetal_stem_cells.xls.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE81237 | GSE81237_DE_RNAseqseq_analysis_DESeq_TTP-AAvsGFP.csv.gz | anti-conservative | 0.66 | anti-conservative | 0.59 | ||
| GSE67360 | GSE67360_differentially_expressed_transcripts.txt.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE63707 | GSE63707_DEXSeqResults_AretIR_72h_vs_IFMWT_72h.txt.gz | anti-conservative | 0.67 | NA | NA | NA | |
| GSE97406 | GSE97406_CRP_K100R_vs_CRP_Control.csv.gz-set-0 | anti-conservative | 0.01 | NA | NA | NA | |
| GSE97406 | GSE97406_CRP_K100R_vs_CRP_Control.csv.gz-set-1 | anti-conservative | 0.02 | NA | NA | NA | |
| GSE67834 | GSE67834_DESeq2_genes_diffexp_by_fc_sp-DCs_vs_mTECs.csv.gz | anti-conservative | 0.29 | anti-conservative | 0.13 | ||
| GSE81237 | GSE81237_DE_RNAseqseq_analysis_DESeq_TTP-AAvsTTP.csv.gz | anti-conservative | 0.56 | anti-conservative | 0.48 | ||
| GSE77077 | GSE77077_HT_data_36hpf.xls.gz | anti-conservative | 0.43 | NA | NA | NA | |
| GSE59335 | GSE59335_exons_sig_anno_total.txt.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE33736 | GSE33736_HAmCqG0_G8expression.txt.gz | anti-conservative | 0.60 | NA | NA | NA | |
| GSE67834 | GSE67834_DESeq2_genes_diffexp_by_fc_sp-DCs_vs_t-DCs.csv.gz | anti-conservative | 0.52 | anti-conservative | 0.22 | ||
| GSE87706 | GSE87706_SM_vs_RODI.txt.gz | anti-conservative | 0.27 | anti-conservative | 0.13 | ||
| GSE87365 | GSE87365_gene_exp_diff_fc_yes_reg_Fetal_stem_cells_vs_Fetal_myotubes.xls.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE81237 | GSE81237_DE_RNAseqseq_analysis_DESeq_TTPvsGFP.csv.gz | anti-conservative | 0.75 | anti-conservative | 0.69 | ||
| GSE97406 | GSE97406_CRP_WT_vs_CRP_Control.csv.gz-set-0 | anti-conservative | 0.01 | NA | NA | NA | |
| GSE97406 | GSE97406_CRP_WT_vs_CRP_Control.csv.gz-set-1 | anti-conservative | 0.02 | NA | NA | NA | |
| GSE67834 | GSE67834_DESeq2_genes_diffexp_by_fc_t-DCs_vs_mTECs.csv.gz | anti-conservative | 0.27 | anti-conservative | 0.11 | ||
| GSE87495 | GSE87495_results_dds_gencode22.csv.gz | anti-conservative | 0.34 | anti-conservative | 0.15 | ||
| GSE57397 | GSE57397_degexp.KO-REC-REP1-RNA.vs.KO-HS-REP1-RNA.output_score.txt.gz | anti-conservative | 0.38 | NA | NA | NA | |
| GSE63707 | GSE63707_DEXSeqResults_salm_ko_vs_IFMWT_03d.txt.gz | anti-conservative | 0.65 | NA | NA | NA | |
| GSE67834 | GSE67834_DESeq2_genes_diffexp_by_fc_t-DCs_vs_sp-DCs.csv.gz | anti-conservative | 0.52 | anti-conservative | 0.22 | ||
| GSE57397 | GSE57397_degexp.KO-REC-REP2-RNA.vs.KO-HS-REP2-RNA.output_score.txt.gz | anti-conservative | 0.39 | NA | NA | NA | |
| GSE57397 | GSE57397_degexp.WT-REC-REP1-RNA.vs.WT-HS-REP1-RNA.output_score.txt.gz | anti-conservative | 0.34 | NA | NA | NA | |
| GSE48812 | GSE48812_24h_LNCAP_SFN.diff.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE48812 | GSE48812_24h_LNCAP_SFN.diff.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE48812 | GSE48812_24h_LNCAP_SFN.diff.txt.gz-set-2 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE57397 | GSE57397_degexp.WT-REC-REP2-RNA.vs.WT-HS-REP2-RNA.output_score.txt.gz | anti-conservative | 0.37 | NA | NA | NA | |
| GSE48812 | GSE48812_24h_LNCAPvsPC3.diff.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE48812 | GSE48812_24h_LNCAPvsPC3.diff.txt.gz-set-1 | anti-conservative | 0.01 | NA | NA | NA | |
| GSE48812 | GSE48812_24h_LNCAPvsPC3.diff.txt.gz-set-2 | anti-conservative | 0.01 | NA | NA | NA | |
| GSE48812 | GSE48812_24h_PC3_SFN.diff.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE48812 | GSE48812_24h_PC3_SFN.diff.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE48812 | GSE48812_24h_PC3_SFN.diff.txt.gz-set-2 | anti-conservative | 0.01 | NA | NA | NA | |
| GSE77044 | GSE77044_comparison2.xls.gz | anti-conservative | 0.69 | anti-conservative | 0.66 | ||
| GSE58053 | GSE58053_25mm-over-0mm.txt.gz | anti-conservative | 0.56 | NA | NA | NA | |
| GSE48812 | GSE48812_24h_PREC_SFN.diff.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE48812 | GSE48812_24h_PREC_SFN.diff.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE48812 | GSE48812_24h_PREC_SFN.diff.txt.gz-set-2 | anti-conservative | 0.01 | NA | NA | NA | |
| GSE43650 | GSE43650_gene_exp_diff_sig.txt.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE63141 | GSE63141_eTMglc_gene_exp.diff.gz | anti-conservative | 0.95 | NA | NA | NA | |
| GSE58053 | GSE58053_25mm-over-1mm.txt.gz | anti-conservative | 0.68 | NA | NA | NA | |
| GSE48812 | GSE48812_24h_PRECvsLNCAP.diff.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE48812 | GSE48812_24h_PRECvsLNCAP.diff.txt.gz-set-1 | anti-conservative | 0.01 | NA | NA | NA | |
| GSE48812 | GSE48812_24h_PRECvsLNCAP.diff.txt.gz-set-2 | anti-conservative | 0.01 | NA | NA | NA | |
| GSE63141 | GSE63141_eTMgly_gene_exp.diff.gz | anti-conservative | 0.78 | NA | NA | NA | |
| GSE48812 | GSE48812_24h_PRECvsPC3.diff.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE48812 | GSE48812_24h_PRECvsPC3.diff.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE48812 | GSE48812_24h_PRECvsPC3.diff.txt.gz-set-2 | anti-conservative | 0.01 | NA | NA | NA | |
| GSE51037 | GSE51037_Untreated_Nitrate_Processed_CunninghamBussel.xlsx.gz | anti-conservative | 0.90 | NA | NA | NA | |
| GSE79830 | GSE79830_Sp2_Wdr70del_vs_Sp1_Wt.Differential_analysis_results.txt.gz | anti-conservative | 0.72 | NA | NA | NA | |
| GSE56346 | GSE56346_wtNplus_vs_wtNminus_DESeq_output.txt.gz | anti-conservative | 0.36 | anti-conservative | 0.23 | ||
| GSE48812 | GSE48812_6h_LNCAP_SFN.diff.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE48812 | GSE48812_6h_LNCAP_SFN.diff.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE48812 | GSE48812_6h_LNCAP_SFN.diff.txt.gz-set-2 | anti-conservative | 0.01 | NA | NA | NA | |
| GSE50708 | GSE50708_DE_result.txt.gz | anti-conservative | 0.32 | NA | NA | NA | |
| GSE48812 | GSE48812_6h_LNCAPvsPC3.diff.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE48812 | GSE48812_6h_LNCAPvsPC3.diff.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE48812 | GSE48812_6h_LNCAPvsPC3.diff.txt.gz-set-2 | anti-conservative | 0.01 | NA | NA | NA | |
| GSE43143 | GSE43143_tooth_FPKM_DE.txt.gz-set-0 | anti-conservative | 0.65 | NA | NA | NA | |
| GSE43143 | GSE43143_tooth_FPKM_DE.txt.gz-set-1 | anti-conservative | 0.99 | NA | NA | NA | |
| GSE43143 | GSE43143_tooth_FPKM_DE.txt.gz-set-2 | anti-conservative | 0.82 | NA | NA | NA | |
| GSE45788 | GSE45788_S72_2_RefII_S72_1_Emf_exp.cuff.gz | anti-conservative | 0.83 | NA | NA | NA | |
| GSE48812 | GSE48812_6h_PC3_SFN.diff.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE48812 | GSE48812_6h_PC3_SFN.diff.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE48812 | GSE48812_6h_PC3_SFN.diff.txt.gz-set-2 | anti-conservative | 0.01 | NA | NA | NA | |
| GSE99944 | GSE99944_Digo_expression_SD-T50nM_SD-Ctrl.csv.gz | anti-conservative | 0.48 | anti-conservative | 0.34 | ||
| GSE83218 | GSE83218_HSC.txt.gz | anti-conservative | 0.88 | anti-conservative | 0.77 | ||
| GSE48812 | GSE48812_6h_PREC_SFN.diff.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE48812 | GSE48812_6h_PREC_SFN.diff.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE48812 | GSE48812_6h_PREC_SFN.diff.txt.gz-set-2 | anti-conservative | 0.01 | NA | NA | NA | |
| GSE99944 | GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.05 UP | anti-conservative | 0.00 | anti-conservative | 0.00 | ||
| GSE99944 | GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.05 DOWN | anti-conservative | 0.00 | anti-conservative | 0.00 | ||
| GSE99944 | GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.05 | anti-conservative | 0.00 | anti-conservative | 0.00 | ||
| GSE99944 | GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.10 UP | anti-conservative | 0.01 | anti-conservative | 0.01 | ||
| GSE99944 | GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.10 DOWN | anti-conservative | 0.01 | anti-conservative | 0.01 | ||
| GSE99944 | GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.10 | anti-conservative | 0.01 | anti-conservative | 0.01 | ||
| GSE85385 | GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-H3WT_DMSO_x_K27M_DMSO | anti-conservative | 0.78 | NA | NA | NA | |
| GSE85385 | GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-H3WT_DMSO_x_H3WT_EPZ | anti-conservative | 0.84 | NA | NA | NA | |
| GSE85385 | GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-K27M_DMSO_x_K27M_EPZ | anti-conservative | 0.85 | NA | NA | NA | |
| GSE93774 | GSE93774_Full_gene_list-Control_vs_KO.csv.gz | anti-conservative | 0.61 | NA | NA | NA | |
| GSE48812 | GSE48812_6h_PRECvsLNCAP.diff.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE48812 | GSE48812_6h_PRECvsLNCAP.diff.txt.gz-set-1 | anti-conservative | 0.01 | NA | NA | NA | |
| GSE48812 | GSE48812_6h_PRECvsLNCAP.diff.txt.gz-set-2 | anti-conservative | 0.01 | NA | NA | NA | |
| GSE93339 | GSE93339_e125_lung_DEG.txt.gz | anti-conservative | 0.02 | NA | NA | NA | |
| GSE56169 | GSE56169_normalized_RNASeq_Ctrl_vs_E2a.txt.gz | anti-conservative | 0.37 | NA | NA | NA | |
| GSE48812 | GSE48812_6h_PRECvsPC3.diff.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE48812 | GSE48812_6h_PRECvsPC3.diff.txt.gz-set-1 | anti-conservative | 0.01 | NA | NA | NA | |
| GSE48812 | GSE48812_6h_PRECvsPC3.diff.txt.gz-set-2 | anti-conservative | 0.01 | NA | NA | NA | |
| GSE83541 | GSE83541_All_Genes_ZnfTG_Muscle_DESeq2_38.txt.gz | anti-conservative | 0.82 | anti-conservative | 0.70 | ||
| GSE63836 | GSE63836_C15Dx_versus_Untr.DESeq.txt.gz | anti-conservative | 0.63 | anti-conservative | 0.42 | ||
| GSE98526 | GSE98526_A12_vs_UA159T5.txt.gz | anti-conservative | 0.58 | NA | NA | NA | |
| GSE89004 | GSE89004_ppGpp0_vs_H78_differential_all.xls.gz | anti-conservative | 0.44 | anti-conservative | 0.21 | ||
| GSE75962 | GSE75962_control_vs_H2O2.DEseq.txt.gz | anti-conservative | 0.77 | anti-conservative | 0.69 | ||
| GSE78824 | GSE78824_Cuffdiff_transcript_differential_expression_testing.tab.gz | anti-conservative | 0.78 | NA | NA | NA | |
| GSE66148 | GSE66148_NC_v_CNS.txt.gz-set-0 | anti-conservative | 0.55 | NA | NA | NA | |
| GSE66148 | GSE66148_NC_v_CNS.txt.gz-set-1 | anti-conservative | 0.52 | NA | NA | NA | |
| GSE66148 | GSE66148_NC_v_CNS.txt.gz-set-2 | anti-conservative | 0.54 | NA | NA | NA | |
| GSE64242 | GSE64242_cufdiff_isoform_exp.diff.gz | anti-conservative | 0.93 | NA | NA | NA | |
| GSE59980 | GSE59980_RNA-seq_598-SKD.txt.gz-set-1 | anti-conservative | 0.39 | NA | NA | NA | |
| GSE98526 | GSE98526_A1_vs_UA159T5.txt.gz | anti-conservative | 0.80 | NA | NA | NA | |
| GSE70141 | GSE70141_Ax2_0H_1+2_ChdC_0H_1+2_DESeq.results.genenames.txt.gz | anti-conservative | 0.61 | anti-conservative | 0.38 | ||
| GSE70141 | GSE70141_Ax2_0H_1_2_Ax2_10H_1_2_DESeq.results.genenames.txt.gz | anti-conservative | 0.22 | anti-conservative | 0.06 | ||
| GSE84737 | GSE84737_All_genes_unfiltered_DE.txt.gz | anti-conservative | 0.45 | NA | NA | NA | |
| GSE80176 | GSE80176_HMLER_Ctrl_vs_DAC_Cuffdiff.txt.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73893 | GSE73893_DEseq-rip_significant_sites.txt.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE98526 | GSE98526_UA159T5_vs_UA159T0.txt.gz | anti-conservative | 0.93 | NA | NA | NA | |
| GSE70141 | GSE70141_Ax2_10H_1_2_ChdC_12H_1_2_DESeq.results.genenames.txt.gz | anti-conservative | 0.30 | anti-conservative | 0.15 | ||
| GSE84737 | GSE84737_Genes_filtered_DE.txt.gz | anti-conservative | 0.47 | NA | NA | NA | |
| GSE73376 | GSE73376_full_list_edgeR_annotated_DGCR8.txt.gz | anti-conservative | 0.80 | NA | NA | NA | |
| GSE75147 | GSE75147_regulated.phf5a_kd_402.down.G166.list.txt.gz | anti-conservative | 0.02 | NA | NA | NA | |
| GSE99170 | GSE99170_NormalizedData.xls.gz-sheet-normalized data | anti-conservative | 0.00 | NA | NA | NA | |
| GSE74103 | GSE74103_Tobacco_FS_v_WT_DESeq_refGene.all.annotated.txt.gz | anti-conservative | 0.62 | anti-conservative | 0.53 | ||
| GSE71185 | GSE71185_CHD8_CRISPR_RNASeq_Cuffdiff_PolyA.txt.gz | anti-conservative | 0.38 | NA | NA | NA | |
| GSE73376 | GSE73376_full_list_edgeR_annotated_RRP6.txt.gz | anti-conservative | 0.82 | NA | NA | NA | |
| GSE93684 | GSE93684_S1-1A-vs-R1-1A.compare.txt.gz | anti-conservative | 0.30 | NA | NA | NA | |
| GSE74103 | GSE74103_Tobacco_G1_v_WT_DESeq_refGene.all.annotated.txt.gz | anti-conservative | 0.42 | anti-conservative | 0.27 | ||
| GSE71185 | GSE71185_CHD8_Knockdown_RNASeq_Cuffdiff_PolyA.txt.gz | anti-conservative | 0.47 | NA | NA | NA | |
| GSE90977 | GSE90977_RNA-seq_COMPLETE_4Con-4CJD_SETS_DEFINITIVE_log2FC_0.5.xlsx.gz-sheet-120 dpi | anti-conservative | 0.06 | anti-conservative | 0.01 | ||
| GSE90977 | GSE90977_RNA-seq_COMPLETE_4Con-4CJD_SETS_DEFINITIVE_log2FC_0.5.xlsx.gz-sheet-180 dpi | anti-conservative | 0.10 | anti-conservative | 0.05 | ||
| GSE74103 | GSE74103_Tobacco_GS_v_WT_DESeq_refGene.all.annotated.txt.gz | anti-conservative | 0.29 | anti-conservative | 0.23 | ||
| GSE71185 | GSE71185_NSD3_Knockdown_RNASeq_Cuffdiff_NSR.txt.gz | anti-conservative | 0.90 | NA | NA | NA | |
| GSE75147 | GSE75147_regulated.phf5a_kd_861.down.0827.list.txt.gz | anti-conservative | 0.02 | NA | NA | NA | |
| GSE62200 | GSE62200_Table_S4.xls.gz-sheet-Table S5 N2Y6-M VS LYP9-M | anti-conservative | 0.81 | NA | NA | NA | |
| GSE90977 | GSE90977_RNA_seq_COMPLETE_4_4_SETS_DEFINITIVE.xlsx.gz-sheet-120 dpi | anti-conservative | 0.54 | anti-conservative | 0.37 | ||
| GSE90977 | GSE90977_RNA_seq_COMPLETE_4_4_SETS_DEFINITIVE.xlsx.gz-sheet-180 dpi | anti-conservative | 0.82 | anti-conservative | 0.83 | ||
| GSE95687 | GSE95687_sleuthResults.txt.gz | anti-conservative | 0.71 | NA | NA | NA | |
| GSE71185 | GSE71185_NSD3_Knockdown_RNASeq_Cuffdiff_PolyA.txt.gz | anti-conservative | 0.77 | NA | NA | NA | |
| GSE75147 | GSE75147_regulated.phf5a_kd_861.down.G166.list.txt.gz | anti-conservative | 0.01 | NA | NA | NA | |
| GSE77398 | GSE77398_mal_all6_cuffdiff_genes.xls.gz | anti-conservative | 0.76 | NA | NA | NA | |
| GSE67646 | GSE67646_DESeq_1.10.1.txt.gz | anti-conservative | 0.67 | anti-conservative | 0.25 | ||
| GSE90478 | GSE90478_Candidates_B_v_A_withNormData.csv.gz | anti-conservative | 0.00 | anti-conservative | 0.00 | ||
| GSE75147 | GSE75147_regulated.phf5a_kd_861.up.G166.list.txt.gz | anti-conservative | 0.04 | NA | NA | NA | |
| GSE54846 | GSE54846_130529.DESeq.120813.combined-htseq-Luc123-m1_123.HGNC.protein_coding.rsgt20.txt.gz | anti-conservative | 0.79 | anti-conservative | 0.45 | ||
| GSE90478 | GSE90478_Candidates_D_v_B_withNormData_CL.csv.gz | anti-conservative | 0.00 | anti-conservative | 0.00 | ||
| GSE80354 | GSE80354_Gata6_DEseq2_res.csv.gz | anti-conservative | 0.78 | anti-conservative | 0.87 | ||
| GSE94534 | GSE94534_MSTR_gene-P005_FC1.2_FPKM2.txt.gz | anti-conservative | 0.02 | NA | NA | NA | |
| GSE79916 | GSE79916_Dataset_S1-JUM_output_for_differential_AS_analyses_of_PSIdeltaAB_and_full-length_PSI_male_fly_heads.xls.gz | anti-conservative | 0.13 | NA | NA | NA | |
| GSE78240 | GSE78240_DESeq_Output.txt.gz | anti-conservative | 0.66 | anti-conservative | 0.59 | ||
| GSE73887 | GSE73887_C6661_EBNA1_vs_C6661_IgG.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_C6661_EBNA1_vs_C6661_IgG.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE80135 | GSE80135_Lipo_siProx_SC_results.csv.gz | anti-conservative | 0.95 | anti-conservative | 0.82 | ||
| GSE73887 | GSE73887_C6661_EBNA1_vs_LCL_EBNA1.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_C6661_EBNA1_vs_LCL_EBNA1.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE44402 | GSE44402_QW_Table_S2-AS_targets_of_PQBP1_identified_from_RNA-seq.xlsx.gz | anti-conservative | 0.23 | NA | NA | NA | |
| GSE79916 | GSE79916_Dataset_S4-DESeq2_output_for_differential_overall_gene_expression_level_analysis_of_PSIdeltaAB_and_full-length_PSI_male_fly_heads.xls.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_C6661_EBNA1_vs_MUTU_EBNA1.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_C6661_EBNA1_vs_MUTU_EBNA1.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE72390 | GSE72390_DiffExpr_Location_7-12_vs_1-6_Oncorhynchus_keta_de_novo.xlsx | anti-conservative | 0.90 | anti-conservative | 0.79 | ||
| GSE85329 | GSE85329_IGF_project_IGF_results.txt.gz | anti-conservative | 0.69 | anti-conservative | 0.55 | ||
| GSE73887 | GSE73887_C6661_EBNA1_vs_RAJI_EBNA1.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_C6661_EBNA1_vs_RAJI_EBNA1.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE75832 | GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P14_P2_gene_exp_down | anti-conservative | 0.76 | NA | NA | NA | |
| GSE73887 | GSE73887_C6661_EBNA1_vs_combine_IgG.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_C6661_EBNA1_vs_combine_IgG.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE56253 | GSE56253_GeneSpring_NGS_processed_data.txt.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE52402 | GSE52402_B19P16_B20P3_RPKM.txt.gz | anti-conservative | 0.63 | NA | NA | NA | |
| GSE85321 | GSE85321_Supplemental_Table_4_YAR_vs_YAD_RNA_seq_.xls.gz-sheet-EV_YAD_YAR_isoformexp | anti-conservative | 0.46 | NA | NA | NA | |
| GSE80135 | GSE80135_siNeg_siProx_sig_results.csv.gz | anti-conservative | 0.79 | anti-conservative | 0.50 | ||
| GSE73887 | GSE73887_C6661_EBNA1_vs_combine_IgG_3.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_C6661_EBNA1_vs_combine_IgG_3.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE77427 | GSE77427_table_S1.xls.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE74993 | GSE74993_SupplementalTables.xlsx-sheet-Table S1 | anti-conservative | 0.50 | anti-conservative | 0.33 | ||
| GSE74993 | GSE74993_SupplementalTables.xlsx-sheet-Table S3 | anti-conservative | 0.68 | anti-conservative | 0.46 | ||
| GSE71902 | GSE71902_WILD-vs-CPH2.txt.gz | anti-conservative | 0.83 | NA | NA | NA | |
| GSE61954 | GSE61954_all_genes_expression_values_supp_table.txt.gz | anti-conservative | 0.77 | anti-conservative | 0.59 | ||
| GSE97421 | GSE97421_GFP_RFP.txt.gz | anti-conservative | 0.57 | anti-conservative | 0.31 | ||
| GSE73887 | GSE73887_LCL_EBNA1_vs_C6661_EBNA1.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_LCL_EBNA1_vs_C6661_EBNA1.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE62785 | GSE62785_Table_S1_Genes_differentially_expressed_in_hns_mutant_in_mid-exponential_phase.xls.gz-sheet-status = OK | anti-conservative | 0.86 | NA | NA | NA | |
| GSE97421 | GSE97421_GFP_Whole.txt.gz | anti-conservative | 0.34 | anti-conservative | 0.04 | ||
| GSE81128 | GSE81128_DESeq2_Results.txt.gz | anti-conservative | 0.32 | anti-conservative | 0.14 | ||
| GSE71710 | GSE71710_siDGCR8_v_siSCR_DESeq_gencode.all.symbol.txt.gz | anti-conservative | 0.84 | anti-conservative | 0.79 | ||
| GSE75731 | GSE75731_ckvsd119a_gene_exp_diff.txt.gz | anti-conservative | 0.49 | NA | NA | NA | |
| GSE73887 | GSE73887_LCL_EBNA1_vs_LCL_IgG.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_LCL_EBNA1_vs_LCL_IgG.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE65072 | GSE65072_DESeq_plusDOX_minusDOX.xlsx | anti-conservative | 0.55 | NA | NA | NA | |
| GSE62785 | GSE62785_Table_S2_Genes_differentially_expressed_in_hns_mutant_in_early_stationary_phase.xls.gz-sheet-status = ok | anti-conservative | 0.78 | NA | NA | NA | |
| GSE75731 | GSE75731_ckvsdrug_gene_exp_diff.txt.gz | anti-conservative | 0.64 | NA | NA | NA | |
| GSE73887 | GSE73887_LCL_EBNA1_vs_MUTU_EBNA1.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_LCL_EBNA1_vs_MUTU_EBNA1.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE71916 | GSE71916_Expression_Cufflinks_siRbfox1_3+EGFP_compared_to_siNT+EGFP.txt.gz | anti-conservative | 0.96 | NA | NA | NA | |
| GSE65935 | GSE65935_DKOrvsDKOnr_diffexp.txt.gz | anti-conservative | 0.53 | NA | NA | NA | |
| GSE33141 | GSE33141_BWADETsKOvsWT2.xls.gz-sheet-DETs-FC1.5-pval0.05 | anti-conservative | 0.01 | NA | NA | NA | |
| GSE96626 | GSE96626_DE_TrtVsVeh.xlsx | anti-conservative | 0.89 | anti-conservative | 0.87 | ||
| GSE85360 | GSE85360_P140_Setd1b_DEGS_021015.txt.gz | anti-conservative | 0.00 | anti-conservative | 0.00 | ||
| GSE89773 | GSE89773_combined_expression_table.txt.gz-set-0 | anti-conservative | 0.41 | anti-conservative | 0.21 | ||
| GSE89773 | GSE89773_combined_expression_table.txt.gz-set-1 | anti-conservative | 0.50 | anti-conservative | 0.26 | ||
| GSE75731 | GSE75731_ckvsv149a_gene_exp_diff.txt.gz | anti-conservative | 0.73 | NA | NA | NA | |
| GSE66506 | GSE66506_DE_analysis_010714.xlsx-sheet-SigGenes | anti-conservative | 0.00 | NA | NA | NA | |
| GSE65935 | GSE65935_WTvsDKOnr_diffexp.txt.gz | anti-conservative | 0.49 | NA | NA | NA | |
| GSE59814 | GSE59814_processed_data.txt.gz | anti-conservative | 0.53 | NA | NA | NA | |
| GSE73887 | GSE73887_LCL_EBNA1_vs_combine_IgG.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_LCL_EBNA1_vs_combine_IgG.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE65935 | GSE65935_WTvsDKOr_diffexp.txt.gz | anti-conservative | 0.47 | NA | NA | NA | |
| GSE33141 | GSE33141_TopHatDETsKOvsWT.xls.gz | anti-conservative | 0.01 | NA | NA | NA | |
| GSE77218 | GSE77218_A3_A2.xlsx-sheet-diff_list | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_LCL_EBNA1_vs_combine_IgG_3.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_LCL_EBNA1_vs_combine_IgG_3.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE48166 | GSE48166_Cufflinks_FPKM.txt.gz | anti-conservative | 0.95 | NA | NA | NA | |
| GSE77218 | GSE77218_A4_A2.xlsx-sheet-diff_list | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_MUTU_EBNA1_vs_C6661_EBNA1.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_MUTU_EBNA1_vs_C6661_EBNA1.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE65973 | GSE65973_NLS_deseq2_all_alluniq_vs_mmu9htdp43nls.txt.gz | anti-conservative | 0.37 | anti-conservative | 0.31 | ||
| GSE90889 | GSE90889_geo_hiPSC-RPE_Vehicle_vs_NAM.xlsx | anti-conservative | 0.69 | anti-conservative | 0.65 | ||
| GSE92282 | GSE92282_Results.csv.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE77218 | GSE77218_A4_A3.xlsx-sheet-diff_list | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_MUTU_EBNA1_vs_LCL_EBNA1.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_MUTU_EBNA1_vs_LCL_EBNA1.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE74920 | GSE74920_SupplementalTable1.xlsx.gz | anti-conservative | 0.50 | anti-conservative | 0.33 | ||
| GSE65487 | GSE65487_deseq.rminus_rplus.ensembl.csv.gz | anti-conservative | 0.67 | anti-conservative | 0.32 | ||
| GSE97174 | GSE97174_DEseq_DifferentialGeneExpression.txt.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE71539 | GSE71539_TP0vsTP23_gene_results.txt.gz | anti-conservative | 0.86 | NA | NA | NA | |
| GSE73887 | GSE73887_MUTU_EBNA1_vs_MUTU_IgG.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_MUTU_EBNA1_vs_MUTU_IgG.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE74920 | GSE74920_SupplementalTable3.xlsx.gz | anti-conservative | 0.68 | anti-conservative | 0.46 | ||
| GSE71539 | GSE71539_TP0vsTP23_tag_results.txt.gz | anti-conservative | 0.85 | NA | NA | NA | |
| GSE65487 | GSE65487_deseq.rplus_gplus.ensembl.csv.gz | anti-conservative | 0.50 | anti-conservative | 0.19 | ||
| GSE54440 | GSE54440_WT_Z2_RNAseq_rep2.txt.gz | anti-conservative | 0.51 | NA | NA | NA | |
| GSE79039 | GSE79039_Feske_Tcon_DKO_vs_WT_norm_counts_DE_expression_all.txt.gz | anti-conservative | 0.62 | anti-conservative | 0.41 | ||
| GSE75993 | GSE75993_processed_data.xls.gz-sheet-1_WT_vs_KO_DESeq_All | anti-conservative | 0.94 | NA | NA | NA | |
| GSE73887 | GSE73887_MUTU_EBNA1_vs_combine_IgG.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_MUTU_EBNA1_vs_combine_IgG.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE41766 | GSE41766_IBH1-Ox_vs_Col.txt.gz | anti-conservative | 0.00 | anti-conservative | 0.00 | ||
| GSE79039 | GSE79039_Feske_Tfh_DKO_vs_WT_norm_counts_DE_expression_all.txt.gz | anti-conservative | 0.73 | anti-conservative | 0.52 | ||
| GSE73887 | GSE73887_MUTU_EBNA1_vs_combine_IgG_3.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_MUTU_EBNA1_vs_combine_IgG_3.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE41766 | GSE41766_PRE1-Ox_IBH1-Ox_vs_IBH1-Ox.txt.gz | anti-conservative | 0.62 | anti-conservative | 0.29 | ||
| GSE63224 | GSE63224_All_unigene_expression.txt.gz-set-5 | anti-conservative | 0.94 | NA | NA | NA | |
| GSE73887 | GSE73887_RAJI_EBNA1_vs_C6661_EBNA1.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_RAJI_EBNA1_vs_C6661_EBNA1.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE67334 | GSE67334_TFH.Vs.TH1.DESeq_Analysis_DE_Genes.txt.gz | anti-conservative | 0.79 | anti-conservative | 0.56 | ||
| GSE63224 | GSE63224_Degradome_result.xlsx | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_RAJI_EBNA1_vs_LCL_EBNA1.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_RAJI_EBNA1_vs_LCL_EBNA1.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE71862 | GSE71862_DeSeq2_MCF7_vs_MCF10A_foldchange.txt.gz | anti-conservative | 0.46 | anti-conservative | 0.45 | ||
| GSE80349 | GSE80349_results.txt.gz-set-0 | anti-conservative | 0.07 | NA | NA | NA | |
| GSE73887 | GSE73887_RAJI_EBNA1_vs_MUTU_EBNA1.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_RAJI_EBNA1_vs_MUTU_EBNA1.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE48671 | GSE48671_all.GeneDiffExp.txt.gz-set-0 | anti-conservative | 0.27 | NA | NA | NA | |
| GSE48671 | GSE48671_all.GeneDiffExp.txt.gz-set-1 | anti-conservative | 0.16 | NA | NA | NA | |
| GSE92506 | GSE92506_DEseq2_wholeTable.txt.gz | anti-conservative | 0.64 | anti-conservative | 0.42 | ||
| GSE47773 | GSE47773_Matrix_table.txt.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_RAJI_EBNA1_vs_RAJI_IgG.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_RAJI_EBNA1_vs_RAJI_IgG.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE36781 | GSE36781_gene_exp_diff.txt.gz | anti-conservative | 0.96 | NA | NA | NA | |
| GSE40478 | GSE40478_output_score.txt.gz | anti-conservative | 0.32 | NA | NA | NA | |
| GSE63510 | GSE63510_ko_vs_wt_fold_changes_p_values.txt.gz | anti-conservative | 0.54 | anti-conservative | 0.29 | ||
| GSE71093 | GSE71093_a456_vs_a123_sig.txt.gz | anti-conservative | 0.02 | NA | NA | NA | |
| GSE73887 | GSE73887_RAJI_EBNA1_vs_combine_IgG.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_RAJI_EBNA1_vs_combine_IgG.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE61491 | GSE61491_CHDKD_differential_expression.txt.gz | anti-conservative | 0.95 | NA | NA | NA | |
| GSE57580 | GSE57580_different_expressed_gene_list_between_gynoecious_vs_monoecious.txt.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE87167 | GSE87167_all_genes.txt.gz | anti-conservative | 0.38 | NA | NA | NA | |
| GSE61290 | GSE61290_Scr_Vs_shMyb.txt.gz | anti-conservative | 0.04 | NA | NA | NA | |
| GSE64359 | GSE64359_DE_dfwt_combined.txt.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_RAJI_EBNA1_vs_combine_IgG_3.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE73887 | GSE73887_RAJI_EBNA1_vs_combine_IgG_3.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE37682 | GSE37682_RAW.txt.gz | anti-conservative | 0.69 | NA | NA | NA | |
| GSE81059 | GSE81059_cns-control_vs_head-control.csv.gz | anti-conservative | 0.51 | anti-conservative | 0.13 | ||
| GSE66793 | GSE66793_cmp1-3-geo-gene.tsv.gz | anti-conservative | 0.86 | NA | NA | NA | |
| GSE69001 | GSE69001_DE_list_planktonic_v_biolfim.txt.gz | anti-conservative | 0.44 | NA | NA | NA | |
| GSE72293 | GSE72293_E17_vs_P9_filtered_rpkm5.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE72293 | GSE72293_E17_vs_P9_filtered_rpkm5.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE58495 | GSE58495_diffexp_LSK.txt.gz-set-0 | anti-conservative | 0.66 | NA | NA | NA | |
| GSE58495 | GSE58495_diffexp_LSK.txt.gz-set-1 | anti-conservative | 0.58 | NA | NA | NA | |
| GSE69001 | GSE69001_DE_list_planktonic_v_plate.txt.gz | anti-conservative | 0.33 | NA | NA | NA | |
| GSE63948 | GSE63948_Supplemental_Table2_DeepSeq_Fanourgakis_etAl.xls.gz-sheet-short 3’UTR transcripts(<350nt) | anti-conservative | 0.90 | NA | NA | NA | |
| GSE63948 | GSE63948_Supplemental_Table2_DeepSeq_Fanourgakis_etAl.xls.gz-sheet-medium 3’UTR transcripts | anti-conservative | 0.95 | NA | NA | NA | |
| GSE63948 | GSE63948_Supplemental_Table2_DeepSeq_Fanourgakis_etAl.xls.gz-sheet-long 3’UTR transcripts(>1500nt) | anti-conservative | 0.87 | NA | NA | NA | |
| GSE67756 | GSE67756_LA2A-vs-LC2A.compare.txt.gz | anti-conservative | 0.42 | NA | NA | NA | |
| GSE81913 | GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-4-5-2016_gran_v_iRed.csv | anti-conservative | 0.61 | anti-conservative | 0.43 | ||
| GSE81913 | GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-Up | anti-conservative | 0.46 | NA | NA | NA | |
| GSE81913 | GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-Down | anti-conservative | 0.58 | anti-conservative | 0.48 | ||
| GSE69001 | GSE69001_DE_list_plate_v_biofilm.txt.gz | anti-conservative | 0.38 | NA | NA | NA | |
| GSE67756 | GSE67756_LA2A-vs-LC2A.diff_annot.txt.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE41873 | GSE41873_FPKM_all_genes_from_CuffDiff.txt.gz | anti-conservative | 0.74 | NA | NA | NA | |
| GSE86211 | GSE86211_CmrA_transcriptome_Expression_of_all_genes.xlsx-sheet-PA14vsPJ01 | anti-conservative | 0.93 | NA | NA | NA | |
| GSE86211 | GSE86211_CmrA_transcriptome_Expression_of_all_genes.xlsx-sheet-PJ01vsPJ01dT | anti-conservative | 0.96 | NA | NA | NA | |
| GSE77025 | GSE77025_gene_exp.diff.gz | anti-conservative | 0.35 | NA | NA | NA | |
| GSE53040 | GSE53040_wtDMSOvswtXP13.txt.gz | anti-conservative | 0.69 | NA | NA | NA | |
| GSE68846 | GSE68846_KO_vs_Control_05.csv.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE67756 | GSE67756_LB2A-vs-LA2A.compare.txt.gz | anti-conservative | 0.44 | NA | NA | NA | |
| GSE32038 | GSE32038_cds.diff.gz | anti-conservative | 0.07 | NA | NA | NA | |
| GSE66158 | GSE66158_nc_vs_59_differentially_expressed_genes_FPKM_GEO.txt.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE68846 | GSE68846_KO_vs_Control_10.csv.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE67756 | GSE67756_LB2A-vs-LA2A.diff_annot.txt.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE81043 | GSE81043_sh109_final_unique_DESeq_InfFixed_DiffExp.xlsx.gz | anti-conservative | 0.48 | anti-conservative | 0.14 | ||
| GSE68846 | GSE68846_KO_vs_Control_15.csv.gz | anti-conservative | 0.01 | NA | NA | NA | |
| GSE67756 | GSE67756_LB2A-vs-LC2A.compare.txt.gz | anti-conservative | 0.53 | NA | NA | NA | |
| GSE41367 | GSE41367_brenneri_gns.expr.txt.gz | anti-conservative | 0.36 | NA | NA | NA | |
| GSE97060 | GSE97060_122KOMouse_SleuthOutput.txt.gz | anti-conservative | 0.46 | NA | NA | NA | |
| GSE68846 | GSE68846_KO_vs_Control_20.csv.gz | anti-conservative | 0.01 | anti-conservative | 0.01 | ||
| GSE67756 | GSE67756_LB2A-vs-LC2A.diff_annot.txt.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE41367 | GSE41367_brenneri_soap.expr.txt.gz | anti-conservative | 0.37 | NA | NA | NA | |
| GSE37001 | GSE37001_DEgenes.txt.gz | anti-conservative | 0.00 | anti-conservative | 0.00 | ||
| GSE64513 | GSE64513_FOXD3_vs_Control_gene_exp_diff_anno.txt.gz | anti-conservative | 0.61 | NA | NA | NA | |
| GSE67756 | GSE67756_LB2A-vs-LF1A.compare.txt.gz | anti-conservative | 0.49 | NA | NA | NA | |
| GSE41367 | GSE41367_briggsae_gns.expr.txt.gz | anti-conservative | 0.33 | NA | NA | NA | |
| GSE38764 | GSE38764_DESeq.nbVsneuron-orig-FDR0.01.txt.gz | anti-conservative | 0.00 | anti-conservative | 0.00 | ||
| GSE37001 | GSE37001_DEintrons.txt.gz | anti-conservative | 0.00 | anti-conservative | 0.00 | ||
| GSE95108 | GSE95108_DEtest_wo_wt1.xlsx-sheet-DEtest | anti-conservative | 0.76 | NA | NA | NA | |
| GSE64513 | GSE64513_FOXD3_vs_Control_gene_exp_diff_sig_anno.txt.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE67756 | GSE67756_LB2A-vs-LF1A.diff_annot.txt.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE41367 | GSE41367_briggsae_soap.expr.txt.gz | anti-conservative | 0.35 | NA | NA | NA | |
| GSE37001 | GSE37001_DEisoforms.txt.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE41367 | GSE41367_elegans_gns.expr.txt.gz | anti-conservative | 0.30 | NA | NA | NA | |
| GSE79286 | GSE79286_CYC2vsWT_Conj-2.5hr_RNA-Seq.xlsx-sheet-Significant-FULL | anti-conservative | 0.00 | NA | NA | NA | |
| GSE41367 | GSE41367_elegans_soap.expr.txt.gz | anti-conservative | 0.26 | NA | NA | NA | |
| GSE32038 | GSE32038_promoters.diff.gz | anti-conservative | 0.05 | NA | NA | NA | |
| GSE77568 | GSE77568_CHIP_DMSO_vs_JQ1.txt.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE83375 | GSE83375_GB_glia.FPKM.txt.gz | anti-conservative | 0.66 | NA | NA | NA | |
| GSE79286 | GSE79286_CYC2vsWT_Conj-2hr_RNA-Seq.xlsx-sheet-Significant-FULL | anti-conservative | 0.00 | NA | NA | NA | |
| GSE79286 | GSE79286_CYC2vsWT_Conj-2hr_RNA-Seq.xlsx-sheet-Significant-UP | anti-conservative | 0.00 | NA | NA | NA | |
| GSE64413 | GSE64413_orf57_pval_cutoff_0.001.csv.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE41367 | GSE41367_japonica_gns.expr.txt.gz | anti-conservative | 0.29 | NA | NA | NA | |
| GSE32038 | GSE32038_splicing.diff.gz | anti-conservative | 0.06 | NA | NA | NA | |
| GSE74929 | GSE74929_Diff_Exp.txt.gz-set-0 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE74929 | GSE74929_Diff_Exp.txt.gz-set-1 | anti-conservative | 0.22 | NA | NA | NA | |
| GSE77568 | GSE77568_CHIP_DMSO_vs_input.txt.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE79286 | GSE79286_CYC2vsWT_Conj-3.5hr_RNA-Seq.xlsx-sheet-Significant-FULL | anti-conservative | 0.00 | NA | NA | NA | |
| GSE64413 | GSE64413_orf57_pval_cutoff_0.05.csv.gz | anti-conservative | 0.04 | NA | NA | NA | |
| GSE41590 | GSE41590_Gene_expression.txt.gz | anti-conservative | 0.01 | anti-conservative | 0.01 | ||
| GSE57217 | GSE57217_bck1wt_geneexp_diff.txt.gz | anti-conservative | 0.73 | NA | NA | NA | |
| GSE41367 | GSE41367_japonica_soap.expr.txt.gz | anti-conservative | 0.29 | NA | NA | NA | |
| GSE79820 | GSE79820_all_de_cuffdiff.tsv.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE41367 | GSE41367_remanei_gns.expr.txt.gz | anti-conservative | 0.27 | NA | NA | NA | |
| GSE57254 | GSE57254_WT_KD_CELF1_Fold_change.txt.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE57217 | GSE57217_mkk2wt_geneexp_diff.txt.gz | anti-conservative | 0.80 | NA | NA | NA | |
| GSE41367 | GSE41367_remanei_soap.expr.txt.gz | anti-conservative | 0.25 | NA | NA | NA | |
| GSE80264 | GSE80264_Group_2_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-0 | anti-conservative | 0.01 | NA | NA | NA | |
| GSE80264 | GSE80264_Group_2_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-1 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE80264 | GSE80264_Group_2_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-2 | anti-conservative | 0.02 | NA | NA | NA | |
| GSE80264 | GSE80264_Group_2_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-3 | anti-conservative | 0.56 | NA | NA | NA | |
| GSE43189 | GSE43189_processed_h99_rim101.csv.gz | anti-conservative | 0.46 | NA | NA | NA | |
| GSE90615 | GSE90615_DifferentialExpression.xlsx-sheet-Vehicle_12dP-MI_vs_Pre-MI | anti-conservative | 0.48 | NA | NA | NA | |
| GSE90615 | GSE90615_DifferentialExpression.xlsx-sheet-Sfrp2_12dP-MI_vs_Pre-MI | anti-conservative | 0.43 | NA | NA | NA | |
| GSE90615 | GSE90615_DifferentialExpression.xlsx-sheet-1dP-MI_vs_Pre-MI | anti-conservative | 0.68 | NA | NA | NA | |
| GSE80264 | GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-0 | anti-conservative | 0.01 | NA | NA | NA | |
| GSE80264 | GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-1 | anti-conservative | 0.03 | NA | NA | NA | |
| GSE80264 | GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-2 | anti-conservative | 0.00 | NA | NA | NA | |
| GSE80264 | GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-3 | anti-conservative | 0.54 | NA | NA | NA | |
| GSE57217 | GSE57217_mpk1wt_geneexp_diff.txt.gz | anti-conservative | 0.77 | NA | NA | NA | |
| GSE44457 | GSE44457_Human_transcriptome_deg.txt.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE94512 | GSE94512_NaPi_vs_Lys.txt.gz | anti-conservative | 0.95 | anti-conservative | 0.98 | ||
| GSE90013 | GSE90013_cds_exp.diff_A_B_cds.txt.gz | anti-conservative | 0.03 | NA | NA | NA | |
| GSE75510 | GSE75510_diffExonExprZH1vsB6.txt.gz | anti-conservative | 0.94 | NA | NA | NA | |
| GSE67674 | GSE67674_RNA-seq_analysis_PBSDMSOvsPBSGSK-J4.txt.gz | anti-conservative | 0.95 | NA | NA | NA | |
| GSE62448 | GSE62448_merged_normalized_counts.tab.gz-set-0 | anti-conservative | 0.00 | anti-conservative | 0.00 | ||
| GSE62448 | GSE62448_merged_normalized_counts.tab.gz-set-1 | anti-conservative | 0.00 | anti-conservative | 0.00 | ||
| GSE90013 | GSE90013_gene_exp.diff_A_B_Gene.txt.gz | anti-conservative | 0.02 | NA | NA | NA | |
| GSE75510 | GSE75510_diffExonExprZH3vsB6.txt.gz | anti-conservative | 0.91 | NA | NA | NA | |
| GSE69110 | GSE69110_d2GFP_vs_d2Sox9OE.deseq.res.csv.gz | anti-conservative | 0.58 | anti-conservative | 0.28 | ||
| GSE90712 | GSE90712_Thy1_positive_E_Cad_positive_vs_Thy1_positive_E_Cad_negative.DESeq2_Results.tsv.gz | anti-conservative | 0.60 | anti-conservative | 0.36 | ||
| GSE90013 | GSE90013_isoform_exp.diff_A_B_Isoform.txt.gz | anti-conservative | 0.03 | NA | NA | NA | |
| GSE70876 | GSE70876_Additional_file_4.xls.gz | anti-conservative | 0.32 | NA | NA | NA | |
| GSE95337 | GSE95337_DESeq_EH_Control.vs.dKO.res.txt.gz | anti-conservative | 0.56 | anti-conservative | 0.38 | ||
| GSE79143 | GSE79143_SNPCountsTable.txt.gz | anti-conservative | 0.49 | NA | NA | NA | |
| GSE90013 | GSE90013_tss_group_exp.diff_A_B_tss.txt.gz | anti-conservative | 0.03 | NA | NA | NA | |
| GSE52153 | GSE52153_czt-1DMSOvsczt-1STS.txt.gz | anti-conservative | 0.55 | NA | NA | NA | |
| GSE40948 | GSE40948_NPC_vs_ESC_2replicates_result_10.transcript_summary.tsv.gz | anti-conservative | 0.48 | NA | NA | NA | |
| GSE82134 | GSE82134_NCBI_res_root_deseq_full.xlsx | anti-conservative | 0.61 | NA | NA | NA | |
| GSE78967 | GSE78967_Deseq_Analysis.xlsx | anti-conservative | 0.47 | anti-conservative | 0.38 | ||
| GSE52153 | GSE52153_wtDMSOvswtSTS.txt.gz | anti-conservative | 0.71 | NA | NA | NA | |
| GSE53265 | GSE53265_DESeq.PBNbVsLBNb-orig-FDR0.01.txt.gz | anti-conservative | 0.00 | anti-conservative | 0.00 | ||
| GSE87448 | GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-0 | anti-conservative | 0.04 | NA | NA | NA | |
| GSE87448 | GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-1 | anti-conservative | 0.02 | NA | NA | NA | |
| GSE87448 | GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-2 | anti-conservative | 0.02 | NA | NA | NA | |
| GSE87448 | GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-3 | anti-conservative | 0.03 | NA | NA | NA | |
| GSE87448 | GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-4 | anti-conservative | 0.04 | NA | NA | NA | |
| GSE87448 | GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-5 | anti-conservative | 0.02 | NA | NA | NA | |
| GSE87448 | GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-6 | anti-conservative | 0.02 | NA | NA | NA | |
| GSE87448 | GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-7 | anti-conservative | 0.03 | NA | NA | NA | |
| GSE87448 | GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-8 | anti-conservative | 0.04 | NA | NA | NA | |
| GSE87448 | GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-9 | anti-conservative | 0.02 | NA | NA | NA | |
| GSE87448 | GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-10 | anti-conservative | 0.02 | NA | NA | NA | |
| GSE87448 | GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-11 | anti-conservative | 0.03 | NA | NA | NA | |
| GSE66822 | GSE66822_PRMT5-vs-WT_SC-mrna_counts.txt.gz | anti-conservative | 0.83 | anti-conservative | 0.74 | ||
| GSE53265 | GSE53265_DESeq.PBNbVsPBNbMed27IR-orig-FDR0.01.txt.gz | anti-conservative | 0.00 | anti-conservative | 0.00 | ||
| GSE56439 | GSE56439_DiffExprAnalysis_1.5_fold_.xlsx.gz-sheet-ABA vs CK(>1.5 fold) | anti-conservative | 0.00 | NA | NA | NA | |
| GSE56439 | GSE56439_DiffExprAnalysis_1.5_fold_.xlsx.gz-sheet-water defici VS ABA (>1.5 fold) | anti-conservative | 0.00 | NA | NA | NA | |
| GSE39812 | GSE39812_FB_result_transcript_summary.tsv.txt.gz | anti-conservative | 0.65 | NA | NA | NA | |
| GSE87448 | GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-0 | anti-conservative | 0.07 | NA | NA | NA | |
| GSE87448 | GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-1 | anti-conservative | 0.03 | NA | NA | NA | |
| GSE87448 | GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-2 | anti-conservative | 0.25 | NA | NA | NA | |
| GSE87448 | GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-3 | anti-conservative | 0.23 | NA | NA | NA | |
| GSE87448 | GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-0 | anti-conservative | 0.08 | NA | NA | NA | |
| GSE87448 | GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-1 | anti-conservative | 0.15 | NA | NA | NA | |
| GSE87448 | GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-2 | anti-conservative | 0.03 | NA | NA | NA | |
| GSE87448 | GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-3 | anti-conservative | 0.22 | NA | NA | NA | |
| GSE87448 | GSE87448_MYC_vs_CTRL_at_2fold-p005-3502_genes_Myc_Only.txt.gz-set-0 | anti-conservative | 0.07 | NA | NA | NA | |
| GSE87448 | GSE87448_MYC_vs_CTRL_at_2fold-p005-3502_genes_Myc_Only.txt.gz-set-1 | anti-conservative | 0.03 | NA | NA | NA | |
| GSE75878 | GSE75878_promoters.diff.gz | anti-conservative | 0.44 | NA | NA | NA | |
| GSE75833 | GSE75833_DESeq-processed_FB.control_vs_BR.txt.gz | anti-conservative | 0.60 | anti-conservative | 0.14 | ||
| GSE60968 | GSE60968_VEC_vs_CRE_DE.txt.gz | anti-conservative | 0.38 | NA | NA | NA | |
| GSE50535 | GSE50535_diffexp_1.txt.gz-set-0 | anti-conservative | 0.63 | NA | NA | NA | |
| GSE50535 | GSE50535_diffexp_1.txt.gz-set-1 | anti-conservative | 0.64 | NA | NA | NA | |
| GSE93827 | GSE93827_LMP1_2a_vs_GFP.txt.gz | anti-conservative | 0.51 | anti-conservative | 0.27 | ||
| GSE75878 | GSE75878_splicing.diff.gz | anti-conservative | 0.38 | NA | NA | NA | |
| GSE70488 | GSE70488_Day_vs_Night_sSeq.txt.gz | anti-conservative | 0.35 | NA | NA | NA | |
| GSE59715 | GSE59715_finalHiCRNAseqTable.csv.gz | anti-conservative | 0.73 | anti-conservative | 0.44 | ||
| GSE50535 | GSE50535_diffexp_2.txt.gz | anti-conservative | 0.56 | NA | NA | NA | |
| GSE83134 | GSE83134_RYBPfl.DESeq2.Output.txt.gz-set-0 | anti-conservative | 0.92 | anti-conservative | 0.99 | ||
| GSE50535 | GSE50535_diffexp_3.txt.gz-set-0 | anti-conservative | 0.61 | NA | NA | NA | |
| GSE50535 | GSE50535_diffexp_3.txt.gz-set-1 | anti-conservative | 0.30 | NA | NA | NA | |
| GSE80348 | GSE80348_20160316_6h_wt_vs_mu.xlsx | anti-conservative | 0.52 | NA | NA | NA | |
| GSE87398 | GSE87398_gene_exp.diff.gz | anti-conservative | 0.83 | NA | NA | NA | |
| GSE99096 | GSE99096_Yang_Processed_data_Oxidative_Stress.xlsx | anti-conservative | 0.31 | NA | NA | NA | |
| GSE70069 | GSE70069_Deregulated_genes_upon_knock-down_of_Setdb1_in_C2C12.txt.gz | anti-conservative | 0.00 | anti-conservative | 0.00 | ||
| GSE52080 | GSE52080_processed_data_pvalue-filtered.txt.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE85627 | GSE85627_mDUX-mESC.xlsx.gz-sheet-Unsorted | anti-conservative | 0.62 | anti-conservative | 0.16 | ||
| GSE85627 | GSE85627_mDUX-mESC.xlsx.gz-sheet-Sorted | anti-conservative | 0.53 | anti-conservative | 0.18 | ||
| GSE74171 | GSE74171_expressed_transcript_aging_RNAseq_posterior_midgut.txt.gz | anti-conservative | 0.51 | NA | NA | NA | |
| GSE93877 | GSE93877_NB4_RNASeq_ATRA.txt.gz | anti-conservative | 0.84 | anti-conservative | 0.75 | ||
| GSE74171 | GSE74171_processed_aging_data.txt.gz | anti-conservative | 0.01 | anti-conservative | 0.00 | ||
| GSE57482 | GSE57482_output_score.txt.gz | anti-conservative | 0.25 | NA | NA | NA | |
| GSE89238 | GSE89238_SET2_KO_DESeq2_output.txt.gz | anti-conservative | 0.63 | anti-conservative | 0.67 | ||
| GSE93877 | GSE93877_NB4_RNASeq_DMSO.txt.gz | anti-conservative | 0.95 | anti-conservative | 0.93 | ||
| GSE87398 | GSE87398_genes_group_exp.diff.gz | anti-conservative | 0.83 | NA | NA | NA | |
| GSE73323 | GSE73323_gene_expression_profiles.txt.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE65688 | GSE65688_gene_exp.diff_GFP_TAT_Gene.csv.gz | anti-conservative | 0.02 | NA | NA | NA | |
| GSE59571 | GSE59571_S13113_genesdiff.xlsx | anti-conservative | 0.70 | NA | NA | NA | |
| GSE96999 | GSE96999_DESeq2_miseq_output.txt.gz | anti-conservative | 0.25 | anti-conservative | 0.23 | ||
| GSE94280 | GSE94280_DESeq2_results_Y_vs_O.txt.gz | anti-conservative | 0.61 | anti-conservative | 0.33 | ||
| GSE93313 | GSE93313_DESeq_2Dvs3D.txt.gz | anti-conservative | 0.77 | anti-conservative | 0.42 | ||
| GSE74168 | GSE74168_expressed_transcripts_RNAseq_GLIrnai_posterior_midgut_EC.txt.gz | anti-conservative | 0.44 | NA | NA | NA | |
| GSE68998 | GSE68998_DiffExpDeseq2_mdx2_NOut_3.6.14.csv.gz | anti-conservative | 0.59 | anti-conservative | 0.47 | ||
| GSE96999 | GSE96999_DESeq2_nextseq_output.txt.gz | anti-conservative | 0.41 | anti-conservative | 0.09 | ||
| GSE93313 | GSE93313_DESeq_2DvsTranswell.txt.gz | anti-conservative | 0.67 | anti-conservative | 0.34 | ||
| GSE86235 | GSE86235_KORvsKOS.xls.gz | anti-conservative | 0.00 | NA | NA | NA | |
| GSE36959 | GSE36959_gene_exp_diff.txt.gz | anti-conservative | 0.64 | NA | NA | NA | |
| GSE93313 | GSE93313_DESeq_3DvsTranswell.txt.gz | anti-conservative | 0.79 | anti-conservative | 0.55 | ||
| GSE86054 | GSE86054_gene_expression.txt.gz | anti-conservative | 0.95 | anti-conservative | 0.89 | ||
| GSE84481 | GSE84481_3xTg.txt.gz | anti-conservative | 0.05 | NA | NA | NA | |
| GSE72491 | GSE72491_PCBP2_KO_v_WT_DESeq_gencode.all.name.txt.gz | anti-conservative | 0.72 | anti-conservative | 0.68 | ||
| GSE49587 | GSE49587_ORvSmn_DEUtable.txt.gz | anti-conservative | 0.77 | NA | NA | NA | |
| GSE93547 | GSE93547_LMvsWTM_cleaned_deseq2.csv.gz | anti-conservative | 0.51 | anti-conservative | 0.32 | ||
| GSE85847 | GSE85847_matrix_rnaseq_GEO_submission_jsantos20160817.txt.gz | anti-conservative | 0.66 | anti-conservative | 0.57 | ||
| GSE60191 | GSE60191_RNA_halflives.xlsx.gz-sheet-Tabelle1 | anti-conservative | 0.32 | NA | NA | NA | |
| GSE84481 | GSE84481_Neuro2a.txt.gz-set-0 | anti-conservative | 0.04 | NA | NA | NA | |
| GSE84481 | GSE84481_Neuro2a.txt.gz-set-1 | anti-conservative | 0.04 | NA | NA | NA | |
| GSE51645 | GSE51645_ASE_processed_data.txt.gz | anti-conservative | 0.98 | NA | NA | NA | |
| GSE17970 | GSE17970_supplemental_table_1.xls.gz | anti-conservative | 0.47 | NA | NA | NA | |
| GSE50198 | GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-0 | anti-conservative | 0.57 | anti-conservative | 0.35 | ||
| GSE50198 | GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-1 | anti-conservative | 0.46 | anti-conservative | 0.17 | ||
| GSE50198 | GSE50198_Tet1kd_vs_v6.5_DEXSeq_results.txt.gz | anti-conservative | 0.67 | NA | NA | NA | |
| GSE50198 | GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-1 | anti-conservative | 0.57 | anti-conservative | 0.31 | ||
| GSE50198 | GSE50198_Tet2kd_vs_v6.5_DEXSeq_results.txt.gz | anti-conservative | 0.68 | NA | NA | NA | |
| GSE52058 | GSE52058_Cuffdiff_Dana_TestisOvary.gene_exp.diff.gz | anti-conservative | 0.35 | NA | NA | NA | |
| GSE52058 | GSE52058_Cuffdiff_Dpse_TestisOvary.gene_exp.diff.gz | anti-conservative | 0.42 | NA | NA | NA | |
| GSE55528 | GSE55528_gene_exp_PA.diff.gz | anti-conservative | 0.56 | NA | NA | NA | |
| GSE55528 | GSE55528_gene_exp_SA.diff.gz | anti-conservative | 0.68 | NA | NA | NA | |
| GSE56132 | GSE56132_Pm_Si_expression.txt.gz-set-0 | anti-conservative | 0.67 | NA | NA | NA | |
| GSE56132 | GSE56132_Pm_Si_expression.txt.gz-set-1 | anti-conservative | 0.57 | NA | NA | NA | |
| GSE58052 | GSE58052_N.europaea_co-culture_over_single-culture.txt.gz | anti-conservative | 0.61 | NA | NA | NA | |
| GSE58865 | GSE58865_Hyphae_vs_Oidia_DESeq_results.txt.gz | anti-conservative | 0.46 | anti-conservative | 0.03 | ||
| GSE68176 | GSE68176_Ophio1_1.gene_exp.diff.gz | anti-conservative | 0.56 | NA | NA | NA |
| Accession | suppdata_id | Histogram | Type | SRP | pi0 | fp | rs | ud | Histogram after filter | Type after filter | SRP after filter | pi0 after filter | fp after filter | rs after filter | ud after filter |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GSE17970 | GSE17970_supplemental_table_1.xls.gz | anti-conservative | 0.95 | 0.46 | 397 | 7202 | 357 | NA | NA | NA | NA | NA | NA | NA | |
| GSE32038 | GSE32038_cds.diff.gz | anti-conservative | 1.00 | 0.06 | 560 | 10614 | 20 | NA | NA | NA | NA | NA | NA | NA | |
| GSE32038 | GSE32038_promoters.diff.gz | anti-conservative | 0.99 | 0.04 | 718 | 13444 | 194 | NA | NA | NA | NA | NA | NA | NA | |
| GSE32038 | GSE32038_splicing.diff.gz | anti-conservative | 1.00 | 0.07 | 857 | 16274 | 1 | NA | NA | NA | NA | NA | NA | NA | |
| GSE37682 | GSE37682_RAW.txt.gz | anti-conservative | 0.51 | 0.71 | 48 | 469 | 863 | NA | NA | NA | NA | NA | NA | NA | |
| GSE40478 | GSE40478_output_score.txt.gz | anti-conservative | 0.52 | 0.55 | 445 | 4367 | 7900 | NA | NA | NA | NA | NA | NA | NA | |
| GSE41367 | GSE41367_brenneri_gns.expr.txt.gz | anti-conservative | 0.84 | 0.18 | 756 | 12000 | 2832 | NA | NA | NA | NA | NA | NA | NA | |
| GSE41367 | GSE41367_brenneri_soap.expr.txt.gz | anti-conservative | 0.80 | 0.21 | 2569 | 39253 | 11892 | NA | NA | NA | NA | NA | NA | NA | |
| GSE41367 | GSE41367_briggsae_gns.expr.txt.gz | anti-conservative | 0.87 | 0.24 | 681 | 11290 | 1882 | NA | NA | NA | NA | NA | NA | NA | |
| GSE41367 | GSE41367_briggsae_soap.expr.txt.gz | anti-conservative | 0.85 | 0.24 | 764 | 12401 | 2488 | NA | NA | NA | NA | NA | NA | NA | |
| GSE41367 | GSE41367_elegans_gns.expr.txt.gz | anti-conservative | 0.91 | 0.18 | 747 | 12929 | 1385 | NA | NA | NA | NA | NA | NA | NA | |
| GSE41367 | GSE41367_elegans_soap.expr.txt.gz | anti-conservative | 0.95 | 0.12 | 1069 | 19328 | 1036 | NA | NA | NA | NA | NA | NA | NA | |
| GSE41367 | GSE41367_japonica_gns.expr.txt.gz | anti-conservative | 0.91 | 0.18 | 772 | 13347 | 1442 | NA | NA | NA | NA | NA | NA | NA | |
| GSE41367 | GSE41367_japonica_soap.expr.txt.gz | anti-conservative | 0.93 | 0.16 | 2990 | 52587 | 4551 | NA | NA | NA | NA | NA | NA | NA | |
| GSE41367 | GSE41367_remanei_gns.expr.txt.gz | anti-conservative | 0.94 | 0.15 | 996 | 17833 | 1168 | NA | NA | NA | NA | NA | NA | NA | |
| GSE41367 | GSE41367_remanei_soap.expr.txt.gz | anti-conservative | 0.96 | 0.14 | 2192 | 39834 | 1894 | NA | NA | NA | NA | NA | NA | NA | |
| GSE43143 | GSE43143_tooth_FPKM_DE.txt.gz-set-0 | anti-conservative | 0.71 | 0.74 | 142 | 1930 | 1083 | NA | NA | NA | NA | NA | NA | NA | |
| GSE43189 | GSE43189_processed_h99_rim101.csv.gz | anti-conservative | 0.81 | 0.43 | 223 | 3412 | 1013 | NA | NA | NA | NA | NA | NA | NA | |
| GSE44402 | GSE44402_QW_Table_S2-AS_targets_of_PQBP1_identified_from_RNA-seq.xlsx.gz | anti-conservative | 0.97 | 0.18 | 58 | 1074 | 38 | NA | NA | NA | NA | NA | NA | NA | |
| GSE48671 | GSE48671_all.GeneDiffExp.txt.gz-set-1 | anti-conservative | 1.00 | 0.15 | 687 | 13046 | 12 | NA | NA | NA | NA | NA | NA | NA | |
| GSE48812 | GSE48812_24h_PRECvsLNCAP.diff.txt.gz-set-2 | anti-conservative | 0.86 | 0.00 | 449 | 7304 | 1430 | NA | NA | NA | NA | NA | NA | NA | |
| GSE48812 | GSE48812_6h_LNCAPvsPC3.diff.txt.gz-set-2 | anti-conservative | 0.85 | 0.00 | 440 | 7129 | 1432 | NA | NA | NA | NA | NA | NA | NA | |
| GSE48812 | GSE48812_6h_PRECvsLNCAP.diff.txt.gz-set-2 | anti-conservative | 0.85 | 0.00 | 388 | 6250 | 1322 | NA | NA | NA | NA | NA | NA | NA | |
| GSE49587 | GSE49587_ORvSmn_DEUtable.txt.gz | anti-conservative | 0.80 | 0.97 | 79 | 1193 | 386 | NA | NA | NA | NA | NA | NA | NA | |
| GSE50198 | GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-1 | anti-conservative | 0.47 | 0.43 | 516 | 4614 | 11018 | anti-conservative | 0.98 | 0.12 | 120 | 2235 | 42 | ||
| GSE50198 | GSE50198_Tet1kd_vs_v6.5_DEXSeq_results.txt.gz | anti-conservative | 0.07 | 0.80 | 288 | 407 | 67970 | NA | NA | NA | NA | NA | NA | NA | |
| GSE50198 | GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-1 | anti-conservative | 0.31 | 0.61 | 235 | 1407 | 9730 | anti-conservative | 0.87 | 0.22 | 94 | 1557 | 256 | ||
| GSE50198 | GSE50198_Tet2kd_vs_v6.5_DEXSeq_results.txt.gz | anti-conservative | 0.07 | 0.81 | 273 | 379 | 65576 | NA | NA | NA | NA | NA | NA | NA | |
| GSE50535 | GSE50535_diffexp_1.txt.gz-set-0 | anti-conservative | 0.65 | 0.45 | 451 | 5579 | 4575 | NA | NA | NA | NA | NA | NA | NA | |
| GSE50535 | GSE50535_diffexp_1.txt.gz-set-1 | anti-conservative | 0.64 | 0.49 | 414 | 5067 | 4344 | NA | NA | NA | NA | NA | NA | NA | |
| GSE50535 | GSE50535_diffexp_2.txt.gz | anti-conservative | 0.65 | 0.46 | 549 | 6731 | 5735 | NA | NA | NA | NA | NA | NA | NA | |
| GSE50535 | GSE50535_diffexp_3.txt.gz-set-0 | anti-conservative | 0.66 | 0.52 | 525 | 6618 | 5044 | NA | NA | NA | NA | NA | NA | NA | |
| GSE50535 | GSE50535_diffexp_3.txt.gz-set-1 | anti-conservative | 0.96 | 0.28 | 1130 | 20628 | 872 | NA | NA | NA | NA | NA | NA | NA | |
| GSE50708 | GSE50708_DE_result.txt.gz | anti-conservative | 0.96 | 0.32 | 449 | 8157 | 401 | NA | NA | NA | NA | NA | NA | NA | |
| GSE51037 | GSE51037_Untreated_Nitrate_Processed_CunninghamBussel.xlsx.gz | anti-conservative | 0.74 | 0.96 | 6 | 87 | 41 | NA | NA | NA | NA | NA | NA | NA | |
| GSE51645 | GSE51645_DE_processed_data.txt.gz | anti-conservative | 0.36 | 0.68 | 36 | 248 | 1199 | NA | NA | NA | NA | NA | NA | NA | |
| GSE54440 | GSE54440_WT_Z2_RNAseq_rep2.txt.gz | anti-conservative | 0.61 | 0.40 | 192 | 2231 | 2309 | NA | NA | NA | NA | NA | NA | NA | |
| GSE55528 | GSE55528_gene_exp_PA.diff.gz | anti-conservative | 0.94 | 0.64 | 100 | 1785 | 118 | NA | NA | NA | NA | NA | NA | NA | |
| GSE55528 | GSE55528_gene_exp_SA.diff.gz | anti-conservative | 0.88 | 0.81 | 24 | 403 | 60 | NA | NA | NA | NA | NA | NA | NA | |
| GSE57217 | GSE57217_bck1wt_geneexp_diff.txt.gz | anti-conservative | 0.48 | 0.80 | 37 | 336 | 751 | NA | NA | NA | NA | NA | NA | NA | |
| GSE57217 | GSE57217_mkk2wt_geneexp_diff.txt.gz | anti-conservative | 0.72 | 0.90 | 28 | 389 | 205 | NA | NA | NA | NA | NA | NA | NA | |
| GSE57217 | GSE57217_mpk1wt_geneexp_diff.txt.gz | anti-conservative | 0.31 | 0.79 | 26 | 151 | 1085 | NA | NA | NA | NA | NA | NA | NA | |
| GSE57397 | GSE57397_degexp.KO-REC-REP1-RNA.vs.KO-HS-REP1-RNA.output_score.txt.gz | anti-conservative | 0.65 | 0.71 | 536 | 6576 | 5596 | NA | NA | NA | NA | NA | NA | NA | |
| GSE57397 | GSE57397_degexp.KO-REC-REP2-RNA.vs.KO-HS-REP2-RNA.output_score.txt.gz | anti-conservative | 0.31 | 0.37 | 572 | 3394 | 23911 | NA | NA | NA | NA | NA | NA | NA | |
| GSE57397 | GSE57397_degexp.WT-REC-REP1-RNA.vs.WT-HS-REP1-RNA.output_score.txt.gz | anti-conservative | 0.32 | 0.28 | 663 | 4006 | 26974 | NA | NA | NA | NA | NA | NA | NA | |
| GSE57397 | GSE57397_degexp.WT-REC-REP2-RNA.vs.WT-HS-REP2-RNA.output_score.txt.gz | anti-conservative | 0.32 | 0.37 | 589 | 3618 | 23462 | NA | NA | NA | NA | NA | NA | NA | |
| GSE57482 | GSE57482_output_score.txt.gz | anti-conservative | 0.49 | 0.41 | 548 | 5103 | 10808 | NA | NA | NA | NA | NA | NA | NA | |
| GSE58052 | GSE58052_N.europaea_co-culture_over_single-culture.txt.gz | anti-conservative | 0.55 | 0.63 | 28 | 287 | 430 | NA | NA | NA | NA | NA | NA | NA | |
| GSE58053 | GSE58053_25mm-over-0mm.txt.gz | anti-conservative | 0.38 | 0.54 | 29 | 208 | 907 | NA | NA | NA | NA | NA | NA | NA | |
| GSE58053 | GSE58053_25mm-over-1mm.txt.gz | anti-conservative | 0.19 | 0.62 | 13 | 46 | 990 | NA | NA | NA | NA | NA | NA | NA | |
| GSE58495 | GSE58495_diffexp_LSK.txt.gz-set-0 | anti-conservative | 0.32 | 0.56 | 172 | 1045 | 6930 | NA | NA | NA | NA | NA | NA | NA | |
| GSE58495 | GSE58495_diffexp_LSK.txt.gz-set-1 | anti-conservative | 0.73 | 0.71 | 257 | 3574 | 1802 | NA | NA | NA | NA | NA | NA | NA | |
| GSE59571 | GSE59571_S13113_genesdiff.xlsx | anti-conservative | 0.67 | 0.68 | 298 | 3794 | 2775 | NA | NA | NA | NA | NA | NA | NA | |
| GSE59715 | GSE59715_finalHiCRNAseqTable.csv.gz | anti-conservative | 0.51 | 0.79 | 111 | 1072 | 2066 | anti-conservative | 0.61 | 0.23 | 59 | 682 | 707 | ||
| GSE59814 | GSE59814_processed_data.txt.gz | anti-conservative | 0.33 | 0.62 | 71 | 437 | 2780 | NA | NA | NA | NA | NA | NA | NA | |
| GSE59980 | GSE59980_RNA-seq_598-SKD.txt.gz-set-1 | anti-conservative | 0.47 | 0.43 | 813 | 7295 | 17235 | NA | NA | NA | NA | NA | NA | NA | |
| GSE60191 | GSE60191_RNA_halflives.xlsx.gz-sheet-Tabelle1 | anti-conservative | 0.20 | 0.18 | 370 | 1408 | 27995 | NA | NA | NA | NA | NA | NA | NA | |
| GSE60968 | GSE60968_VEC_vs_CRE_DE.txt.gz | anti-conservative | 0.89 | 0.36 | 399 | 6776 | 912 | NA | NA | NA | NA | NA | NA | NA | |
| GSE62785 | GSE62785_Table_S2_Genes_differentially_expressed_in_hns_mutant_in_early_stationary_phase.xls.gz-sheet-status = ok | anti-conservative | 0.52 | 0.69 | 28 | 273 | 481 | NA | NA | NA | NA | NA | NA | NA | |
| GSE63224 | GSE63224_All_unigene_expression.txt.gz-set-5 | anti-conservative | 0.97 | 0.97 | 192 | 3527 | 129 | NA | NA | NA | NA | NA | NA | NA | |
| GSE63510 | GSE63510_ko_vs_wt_fold_changes_p_values.txt.gz | anti-conservative | 0.47 | 0.58 | 408 | 3665 | 8616 | anti-conservative | 0.90 | 0.19 | 76 | 1296 | 163 | ||
| GSE63707 | GSE63707_DEXSeqResults_AretIR_03d_vs_IFMWT_03d.txt.gz | anti-conservative | 0.09 | 0.92 | 12 | 20 | 2292 | NA | NA | NA | NA | NA | NA | NA | |
| GSE63707 | GSE63707_DEXSeqResults_AretIR_03d_vs_salm_ko.txt.gz | anti-conservative | 0.10 | 0.63 | 60 | 117 | 9989 | NA | NA | NA | NA | NA | NA | NA | |
| GSE63707 | GSE63707_DEXSeqResults_AretIR_30h_vs_IFMWT_30h.txt.gz | anti-conservative | 0.02 | 0.79 | 5 | 1 | 6196 | NA | NA | NA | NA | NA | NA | NA | |
| GSE63707 | GSE63707_DEXSeqResults_AretIR_72h_vs_IFMWT_72h.txt.gz | anti-conservative | 0.01 | 0.79 | 4 | 1 | 6147 | NA | NA | NA | NA | NA | NA | NA | |
| GSE63707 | GSE63707_DEXSeqResults_salm_ko_vs_IFMWT_03d.txt.gz | anti-conservative | 0.28 | 0.92 | 35 | 184 | 1723 | NA | NA | NA | NA | NA | NA | NA | |
| GSE63948 | GSE63948_Supplemental_Table2_DeepSeq_Fanourgakis_etAl.xls.gz-sheet-long 3’UTR transcripts(>1500nt) | anti-conservative | 0.25 | 0.89 | 6 | 31 | 360 | NA | NA | NA | NA | NA | NA | NA | |
| GSE64513 | GSE64513_FOXD3_vs_Control_gene_exp_diff_anno.txt.gz | anti-conservative | 0.55 | 0.51 | 174 | 1820 | 2676 | NA | NA | NA | NA | NA | NA | NA | |
| GSE65973 | GSE65973_NLS_deseq2_all_alluniq_vs_mmu9htdp43nls.txt.gz | anti-conservative | 0.71 | 0.31 | 273 | 3686 | 2110 | anti-conservative | 0.83 | 0.34 | 71 | 1130 | 272 | ||
| GSE66793 | GSE66793_cmp1-3-geo-gene.tsv.gz | anti-conservative | 0.03 | 0.81 | 5 | 3 | 2544 | NA | NA | NA | NA | NA | NA | NA | |
| GSE66822 | GSE66822_PRMT5-vs-WT_SC-mrna_counts.txt.gz | anti-conservative | 0.21 | 0.83 | 38 | 150 | 2671 | anti-conservative | 0.26 | 0.74 | 8 | 38 | 423 | ||
| GSE67334 | GSE67334_TFH.Vs.TH1.DESeq_Analysis_DE_Genes.txt.gz | anti-conservative | 0.46 | 0.70 | 109 | 956 | 2443 | anti-conservative | 0.57 | 0.46 | 42 | 452 | 599 | ||
| GSE67756 | GSE67756_LA2A-vs-LC2A.compare.txt.gz | anti-conservative | 0.79 | 0.34 | 1509 | 22680 | 7587 | NA | NA | NA | NA | NA | NA | NA | |
| GSE67756 | GSE67756_LB2A-vs-LA2A.compare.txt.gz | anti-conservative | 0.80 | 0.41 | 1391 | 21088 | 6686 | NA | NA | NA | NA | NA | NA | NA | |
| GSE67756 | GSE67756_LB2A-vs-LC2A.compare.txt.gz | anti-conservative | 0.73 | 0.54 | 973 | 13485 | 6859 | NA | NA | NA | NA | NA | NA | NA | |
| GSE67756 | GSE67756_LB2A-vs-LF1A.compare.txt.gz | anti-conservative | 0.68 | 0.37 | 1268 | 16356 | 11406 | NA | NA | NA | NA | NA | NA | NA | |
| GSE67834 | GSE67834_DESeq2_genes_diffexp_by_fc_mTECs_vs_sp-DCs.csv.gz | anti-conservative | 0.90 | 0.23 | 956 | 16395 | 1952 | anti-conservative | 0.99 | 0.10 | 98 | 1862 | 10 | ||
| GSE67834 | GSE67834_DESeq2_genes_diffexp_by_fc_mTECs_vs_t-DCs.csv.gz | anti-conservative | 0.94 | 0.24 | 936 | 16770 | 1079 | NA | NA | NA | NA | NA | NA | NA | |
| GSE67834 | GSE67834_DESeq2_genes_diffexp_by_fc_sp-DCs_vs_mTECs.csv.gz | anti-conservative | 0.90 | 0.23 | 956 | 16395 | 1952 | anti-conservative | 0.99 | 0.10 | 98 | 1862 | 10 | ||
| GSE67834 | GSE67834_DESeq2_genes_diffexp_by_fc_t-DCs_vs_mTECs.csv.gz | anti-conservative | 0.94 | 0.24 | 936 | 16770 | 1079 | NA | NA | NA | NA | NA | NA | NA | |
| GSE68998 | GSE68998_DiffExpDeseq2_mdx2_NOut_3.6.14.csv.gz | anti-conservative | 0.28 | 0.66 | 152 | 815 | 7328 | anti-conservative | 0.72 | 0.37 | 33 | 452 | 252 | ||
| GSE69001 | GSE69001_DE_list_planktonic_v_biolfim.txt.gz | anti-conservative | 0.88 | 0.44 | 95 | 1600 | 236 | NA | NA | NA | NA | NA | NA | NA | |
| GSE69001 | GSE69001_DE_list_plate_v_biofilm.txt.gz | anti-conservative | 0.98 | 0.42 | 108 | 2024 | 36 | NA | NA | NA | NA | NA | NA | NA | |
| GSE69110 | GSE69110_d2GFP_vs_d2Sox9OE.deseq.res.csv.gz | anti-conservative | 0.45 | 0.60 | 225 | 1931 | 5169 | anti-conservative | 0.89 | 0.26 | 67 | 1130 | 150 | ||
| GSE71185 | GSE71185_CHD8_CRISPR_RNASeq_Cuffdiff_PolyA.txt.gz | anti-conservative | 0.65 | 0.32 | 221 | 2744 | 2239 | NA | NA | NA | NA | NA | NA | NA | |
| GSE71185 | GSE71185_CHD8_Knockdown_RNASeq_Cuffdiff_PolyA.txt.gz | anti-conservative | 0.51 | 0.43 | 142 | 1365 | 2620 | NA | NA | NA | NA | NA | NA | NA | |
| GSE71185 | GSE71185_NSD3_Knockdown_RNASeq_Cuffdiff_NSR.txt.gz | anti-conservative | 0.04 | 0.83 | 3 | 2 | 1578 | NA | NA | NA | NA | NA | NA | NA | |
| GSE71185 | GSE71185_NSD3_Knockdown_RNASeq_Cuffdiff_PolyA.txt.gz | anti-conservative | 0.38 | 0.74 | 40 | 290 | 1225 | NA | NA | NA | NA | NA | NA | NA | |
| GSE71539 | GSE71539_TP0vsTP23_gene_results.txt.gz | anti-conservative | 0.04 | 0.80 | 5 | 4 | 2092 | NA | NA | NA | NA | NA | NA | NA | |
| GSE71539 | GSE71539_TP0vsTP23_tag_results.txt.gz | anti-conservative | 0.07 | 0.80 | 25 | 35 | 5811 | NA | NA | NA | NA | NA | NA | NA | |
| GSE71710 | GSE71710_siDGCR8_v_siSCR_DESeq_gencode.all.symbol.txt.gz | anti-conservative | 0.15 | 0.76 | 24 | 67 | 2590 | anti-conservative | 0.14 | 0.74 | 5 | 12 | 555 | ||
| GSE71862 | GSE71862_DeSeq2_MCF7_vs_MCF10A_foldchange.txt.gz | anti-conservative | 0.75 | 0.38 | 419 | 5957 | 2669 | anti-conservative | 0.73 | 0.33 | 59 | 812 | 416 | ||
| GSE71902 | GSE71902_WILD-vs-CPH2.txt.gz | anti-conservative | 0.01 | 0.78 | 0 | 0 | 1330 | NA | NA | NA | NA | NA | NA | NA | |
| GSE72491 | GSE72491_PCBP2_KO_v_WT_DESeq_gencode.all.name.txt.gz | anti-conservative | 0.36 | 0.64 | 104 | 701 | 3584 | anti-conservative | 0.44 | 0.63 | 17 | 144 | 413 | ||
| GSE73376 | GSE73376_full_list_edgeR_annotated_DGCR8.txt.gz | anti-conservative | 0.24 | 0.73 | 70 | 317 | 4276 | NA | NA | NA | NA | NA | NA | NA | |
| GSE73376 | GSE73376_full_list_edgeR_annotated_RRP6.txt.gz | anti-conservative | 0.10 | 0.71 | 32 | 60 | 5482 | NA | NA | NA | NA | NA | NA | NA | |
| GSE74103 | GSE74103_Tobacco_FS_v_WT_DESeq_refGene.all.annotated.txt.gz | anti-conservative | 0.56 | 0.55 | 593 | 6329 | 8796 | anti-conservative | 0.77 | 0.50 | 30 | 436 | 164 | ||
| GSE74103 | GSE74103_Tobacco_G1_v_WT_DESeq_refGene.all.annotated.txt.gz | anti-conservative | 0.74 | 0.32 | 1190 | 16801 | 7832 | anti-conservative | 0.93 | 0.18 | 58 | 1025 | 88 | ||
| GSE74103 | GSE74103_Tobacco_GS_v_WT_DESeq_refGene.all.annotated.txt.gz | anti-conservative | 0.91 | 0.22 | 1679 | 29066 | 3110 | NA | NA | NA | NA | NA | NA | NA | |
| GSE75147 | GSE75147_regulated.phf5a_kd_402.down.G166.list.txt.gz | anti-conservative | 0.97 | 0.02 | 86 | 1592 | 49 | NA | NA | NA | NA | NA | NA | NA | |
| GSE75147 | GSE75147_regulated.phf5a_kd_861.down.0827.list.txt.gz | anti-conservative | 0.98 | 0.03 | 139 | 2575 | 65 | NA | NA | NA | NA | NA | NA | NA | |
| GSE75147 | GSE75147_regulated.phf5a_kd_861.down.G166.list.txt.gz | anti-conservative | 0.99 | 0.04 | 285 | 5340 | 80 | NA | NA | NA | NA | NA | NA | NA | |
| GSE75510 | GSE75510_diffExonExprZH1vsB6.txt.gz | anti-conservative | 0.04 | 0.97 | 1 | 1 | 390 | NA | NA | NA | NA | NA | NA | NA | |
| GSE75510 | GSE75510_diffExonExprZH3vsB6.txt.gz | anti-conservative | 0.00 | 0.95 | 0 | 0 | 887 | NA | NA | NA | NA | NA | NA | NA | |
| GSE75731 | GSE75731_ckvsd119a_gene_exp_diff.txt.gz | anti-conservative | 0.83 | 0.47 | 62 | 969 | 246 | NA | NA | NA | NA | NA | NA | NA | |
| GSE75731 | GSE75731_ckvsdrug_gene_exp_diff.txt.gz | anti-conservative | 0.96 | 0.72 | 38 | 690 | 31 | NA | NA | NA | NA | NA | NA | NA | |
| GSE75731 | GSE75731_ckvsv149a_gene_exp_diff.txt.gz | anti-conservative | 0.95 | 0.82 | 24 | 441 | 23 | NA | NA | NA | NA | NA | NA | NA | |
| GSE75962 | GSE75962_control_vs_H2O2.DEseq.txt.gz | anti-conservative | 0.89 | 0.92 | 62 | 1042 | 143 | anti-conservative | 0.21 | 0.62 | 12 | 46 | 833 | ||
| GSE77025 | GSE77025_gene_exp.diff.gz | anti-conservative | 1.00 | 0.44 | 1266 | 23953 | 110 | NA | NA | NA | NA | NA | NA | NA | |
| GSE77044 | GSE77044_comparison2.xls.gz | anti-conservative | 0.14 | 0.58 | 25 | 64 | 3008 | anti-conservative | 0.26 | 0.60 | 8 | 37 | 414 | ||
| GSE79039 | GSE79039_Feske_Tcon_DKO_vs_WT_norm_counts_DE_expression_all.txt.gz | anti-conservative | 0.66 | 0.59 | 166 | 2072 | 1663 | anti-conservative | 0.78 | 0.30 | 86 | 1264 | 470 | ||
| GSE79039 | GSE79039_Feske_Tfh_DKO_vs_WT_norm_counts_DE_expression_all.txt.gz | anti-conservative | 0.53 | 0.67 | 108 | 1085 | 1821 | anti-conservative | 0.69 | 0.45 | 60 | 787 | 527 | ||
| GSE79143 | GSE79143_SNPCountsTable.txt.gz | anti-conservative | 0.75 | 0.42 | 554 | 7861 | 3560 | NA | NA | NA | NA | NA | NA | NA | |
| GSE79830 | GSE79830_Sp2_Wdr70del_vs_Sp1_Wt.Differential_analysis_results.txt.gz | anti-conservative | 0.58 | 0.84 | 32 | 357 | 443 | NA | NA | NA | NA | NA | NA | NA | |
| GSE80135 | GSE80135_Lipo_siProx_SC_results.csv.gz | anti-conservative | 0.04 | 0.87 | 3 | 2 | 1746 | anti-conservative | 0.09 | 0.72 | 3 | 4 | 499 | ||
| GSE80135 | GSE80135_siNeg_siProx_sig_results.csv.gz | anti-conservative | 0.27 | 0.65 | 68 | 352 | 3515 | anti-conservative | 0.64 | 0.37 | 40 | 486 | 440 | ||
| GSE80264 | GSE80264_Group_2_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-3 | anti-conservative | 0.42 | 0.49 | 36 | 286 | 951 | NA | NA | NA | NA | NA | NA | NA | |
| GSE80264 | GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-1 | anti-conservative | 0.97 | 0.02 | 168 | 3087 | 106 | NA | NA | NA | NA | NA | NA | NA | |
| GSE80264 | GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-3 | anti-conservative | 0.45 | 0.47 | 42 | 355 | 984 | NA | NA | NA | NA | NA | NA | NA | |
| GSE80348 | GSE80348_20160316_6h_wt_vs_mu.xlsx | anti-conservative | 0.49 | 0.56 | 432 | 4037 | 8452 | NA | NA | NA | NA | NA | NA | NA | |
| GSE80354 | GSE80354_Gata6_DEseq2_res.csv.gz | anti-conservative | 0.34 | 0.92 | 33 | 216 | 1195 | anti-conservative | 0.20 | 0.88 | 2 | 6 | 133 | ||
| GSE81128 | GSE81128_DESeq2_Results.txt.gz | anti-conservative | 0.86 | 0.18 | 588 | 9608 | 1829 | anti-conservative | 0.98 | 0.09 | 92 | 1721 | 32 | ||
| GSE81237 | GSE81237_DE_RNAseqseq_analysis_DESeq_TTP-AAvsGFP.csv.gz | anti-conservative | 0.49 | 0.57 | 146 | 1344 | 2926 | anti-conservative | 0.51 | 0.48 | 33 | 323 | 611 | ||
| GSE81237 | GSE81237_DE_RNAseqseq_analysis_DESeq_TTP-AAvsTTP.csv.gz | anti-conservative | 0.64 | 0.48 | 234 | 2854 | 2464 | anti-conservative | 0.67 | 0.35 | 55 | 704 | 512 | ||
| GSE81237 | GSE81237_DE_RNAseqseq_analysis_DESeq_TTPvsGFP.csv.gz | anti-conservative | 0.31 | 0.67 | 65 | 382 | 2734 | anti-conservative | 0.28 | 0.61 | 14 | 73 | 684 | ||
| GSE81913 | GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-4-5-2016_gran_v_iRed.csv | anti-conservative | 0.55 | 0.57 | 343 | 3584 | 5322 | anti-conservative | 0.74 | 0.33 | 46 | 645 | 299 | ||
| GSE81913 | GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-Up | anti-conservative | 0.01 | 0.67 | 133 | 18 | 345558 | NA | NA | NA | NA | NA | NA | NA | |
| GSE81913 | GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-Down | anti-conservative | 0.51 | 0.50 | 215 | 2071 | 3949 | anti-conservative | 0.68 | 0.37 | 39 | 499 | 348 | ||
| GSE83134 | GSE83134_RYBPfl.DESeq2.Output.txt.gz-set-0 | anti-conservative | 0.19 | 0.94 | 13 | 46 | 1064 | anti-conservative | 0.09 | 0.98 | 0 | 1 | 57 | ||
| GSE83218 | GSE83218_HSC.txt.gz | anti-conservative | 0.02 | 0.80 | 2 | 1 | 1923 | anti-conservative | 0.03 | 0.60 | 2 | 1 | 1091 | ||
| GSE83541 | GSE83541_All_Genes_ZnfTG_Muscle_DESeq2_38.txt.gz | anti-conservative | 0.33 | 0.76 | 67 | 426 | 2552 | anti-conservative | 0.28 | 0.68 | 3 | 18 | 168 | ||
| GSE83736 | GSE83736_DESeq2.Vav.KO.C_vs_Vav.WT.C.txt.gz | anti-conservative | 0.44 | 0.49 | 451 | 3801 | 10728 | anti-conservative | 0.92 | 0.25 | 72 | 1261 | 124 | ||
| GSE83736 | GSE83736_DESeq2.Vav.WTvsKO.StimulatedInteractions.txt.gz | anti-conservative | 0.72 | 0.71 | 423 | 5812 | 3065 | anti-conservative | 0.90 | 0.25 | 72 | 1231 | 150 | ||
| GSE84737 | GSE84737_All_genes_unfiltered_DE.txt.gz | anti-conservative | 0.72 | 0.36 | 339 | 4644 | 2478 | NA | NA | NA | NA | NA | NA | NA | |
| GSE84737 | GSE84737_Genes_filtered_DE.txt.gz | anti-conservative | 0.70 | 0.38 | 234 | 3140 | 1864 | NA | NA | NA | NA | NA | NA | NA | |
| GSE85329 | GSE85329_IGF_project_IGF_results.txt.gz | anti-conservative | 0.32 | 0.75 | 110 | 672 | 4409 | anti-conservative | 0.57 | 0.43 | 38 | 416 | 538 | ||
| GSE85385 | GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-H3WT_DMSO_x_K27M_DMSO | anti-conservative | 0.69 | 0.77 | 346 | 4554 | 2921 | NA | NA | NA | NA | NA | NA | NA | |
| GSE85385 | GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-H3WT_DMSO_x_H3WT_EPZ | anti-conservative | 0.68 | 0.85 | 207 | 2690 | 1815 | NA | NA | NA | NA | NA | NA | NA | |
| GSE85627 | GSE85627_mDUX-mESC.xlsx.gz-sheet-Unsorted | anti-conservative | 0.62 | 0.50 | 480 | 5677 | 5533 | anti-conservative | 0.97 | 0.09 | 89 | 1645 | 47 | ||
| GSE85627 | GSE85627_mDUX-mESC.xlsx.gz-sheet-Sorted | anti-conservative | 0.67 | 0.46 | 554 | 7025 | 5244 | anti-conservative | 0.96 | 0.11 | 103 | 1884 | 71 | ||
| GSE86054 | GSE86054_gene_expression.txt.gz | anti-conservative | 0.55 | 0.95 | 22 | 230 | 343 | anti-conservative | 0.71 | 0.91 | 6 | 80 | 46 | ||
| GSE87167 | GSE87167_all_genes.txt.gz | anti-conservative | 0.89 | 0.33 | 1168 | 19813 | 2665 | NA | NA | NA | NA | NA | NA | NA | |
| GSE87448 | GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-2 | anti-conservative | 0.98 | 0.21 | 181 | 3373 | 66 | NA | NA | NA | NA | NA | NA | NA | |
| GSE87448 | GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-3 | anti-conservative | 0.98 | 0.11 | 204 | 3772 | 98 | NA | NA | NA | NA | NA | NA | NA | |
| GSE87448 | GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-3 | anti-conservative | 0.99 | 0.09 | 200 | 3748 | 49 | NA | NA | NA | NA | NA | NA | NA | |
| GSE87495 | GSE87495_results_dds_gencode22.csv.gz | anti-conservative | 0.91 | 0.30 | 566 | 9760 | 1096 | anti-conservative | 0.99 | 0.11 | 86 | 1615 | 20 | ||
| GSE87706 | GSE87706_SM_vs_RODI.txt.gz | anti-conservative | 0.84 | 0.20 | 105 | 1688 | 367 | anti-conservative | 0.99 | 0.08 | 43 | 818 | 7 | ||
| GSE89238 | GSE89238_SET2_KO_DESeq2_output.txt.gz | anti-conservative | 0.09 | 0.77 | 21 | 37 | 3848 | anti-conservative | 0.35 | 0.59 | 9 | 63 | 328 | ||
| GSE89773 | GSE89773_combined_expression_table.txt.gz-set-0 | anti-conservative | 0.82 | 0.36 | 188 | 2921 | 801 | NA | NA | NA | NA | NA | NA | NA | |
| GSE89773 | GSE89773_combined_expression_table.txt.gz-set-1 | anti-conservative | 0.77 | 0.47 | 146 | 2122 | 840 | anti-conservative | 0.93 | 0.21 | 66 | 1172 | 88 | ||
| GSE90615 | GSE90615_DifferentialExpression.xlsx-sheet-Vehicle_12dP-MI_vs_Pre-MI | anti-conservative | 0.68 | 0.39 | 333 | 4287 | 3020 | NA | NA | NA | NA | NA | NA | NA | |
| GSE90615 | GSE90615_DifferentialExpression.xlsx-sheet-Sfrp2_12dP-MI_vs_Pre-MI | anti-conservative | 0.77 | 0.35 | 399 | 5824 | 2291 | NA | NA | NA | NA | NA | NA | NA | |
| GSE90615 | GSE90615_DifferentialExpression.xlsx-sheet-1dP-MI_vs_Pre-MI | anti-conservative | 0.11 | 0.67 | 29 | 61 | 4500 | NA | NA | NA | NA | NA | NA | NA | |
| GSE90712 | GSE90712_Thy1_positive_E_Cad_positive_vs_Thy1_positive_E_Cad_negative.DESeq2_Results.tsv.gz | anti-conservative | 0.72 | 0.59 | 348 | 4750 | 2602 | anti-conservative | 0.84 | 0.27 | 78 | 1233 | 288 | ||
| GSE90889 | GSE90889_geo_hiPSC-RPE_Vehicle_vs_NAM.xlsx | anti-conservative | 0.22 | 0.73 | 75 | 317 | 4950 | anti-conservative | 0.59 | 0.64 | 22 | 249 | 297 | ||
| GSE90977 | GSE90977_RNA_seq_COMPLETE_4_4_SETS_DEFINITIVE.xlsx.gz-sheet-120 dpi | anti-conservative | 0.64 | 0.45 | 294 | 3592 | 3098 | anti-conservative | 0.90 | 0.38 | 65 | 1115 | 141 | ||
| GSE90977 | GSE90977_RNA_seq_COMPLETE_4_4_SETS_DEFINITIVE.xlsx.gz-sheet-180 dpi | anti-conservative | 0.22 | 0.75 | 47 | 198 | 3117 | anti-conservative | 0.28 | 0.79 | 8 | 41 | 367 | ||
| GSE92506 | GSE92506_DEseq2_wholeTable.txt.gz | anti-conservative | 0.53 | 0.57 | 288 | 2909 | 4814 | anti-conservative | 0.76 | 0.31 | 55 | 795 | 333 | ||
| GSE93547 | GSE93547_LMvsWTM_cleaned_deseq2.csv.gz | anti-conservative | 0.74 | 0.44 | 112 | 1588 | 738 | anti-conservative | 0.92 | 0.27 | 44 | 773 | 78 | ||
| GSE93684 | GSE93684_S1-1A-vs-R1-1A.compare.txt.gz | anti-conservative | 0.91 | 0.24 | 3155 | 54738 | 5712 | NA | NA | NA | NA | NA | NA | NA | |
| GSE93827 | GSE93827_LMP1_2a_vs_GFP.txt.gz | anti-conservative | 0.77 | 0.44 | 373 | 5438 | 2141 | anti-conservative | 0.95 | 0.23 | 72 | 1306 | 74 | ||
| GSE93877 | GSE93877_NB4_RNASeq_ATRA.txt.gz | anti-conservative | 0.21 | 0.78 | 30 | 119 | 2214 | anti-conservative | 0.32 | 0.71 | 12 | 74 | 510 | ||
| GSE93877 | GSE93877_NB4_RNASeq_DMSO.txt.gz | anti-conservative | 0.27 | 0.96 | 7 | 36 | 363 | anti-conservative | 0.19 | 0.93 | 2 | 7 | 153 | ||
| GSE95108 | GSE95108_DEtest_wo_wt1.xlsx-sheet-DEtest | anti-conservative | 0.05 | 0.95 | 7 | 7 | 2442 | NA | NA | NA | NA | NA | NA | NA | |
| GSE96626 | GSE96626_DE_TrtVsVeh.xlsx | anti-conservative | 0.22 | 0.89 | 16 | 66 | 1043 | anti-conservative | 0.37 | 0.94 | 3 | 19 | 86 | ||
| GSE96999 | GSE96999_DESeq2_miseq_output.txt.gz | anti-conservative | 0.95 | 0.26 | 257 | 4634 | 266 | anti-conservative | 0.95 | 0.17 | 64 | 1155 | 70 | ||
| GSE96999 | GSE96999_DESeq2_nextseq_output.txt.gz | anti-conservative | 0.67 | 0.40 | 146 | 1856 | 1361 | NA | NA | NA | NA | NA | NA | NA | |
| GSE97060 | GSE97060_122KOMouse_SleuthOutput.txt.gz | anti-conservative | 0.29 | 0.50 | 231 | 1257 | 10937 | NA | NA | NA | NA | NA | NA | NA | |
| GSE97421 | GSE97421_GFP_RFP.txt.gz | anti-conservative | 0.84 | 0.69 | 314 | 5009 | 1130 | anti-conservative | 0.89 | 0.26 | 59 | 1007 | 136 | ||
| GSE97421 | GSE97421_GFP_Whole.txt.gz | anti-conservative | 0.83 | 0.29 | 707 | 11194 | 2680 | NA | NA | NA | NA | NA | NA | NA | |
| GSE98526 | GSE98526_A12_vs_UA159T5.txt.gz | anti-conservative | 0.63 | 0.53 | 31 | 369 | 340 | NA | NA | NA | NA | NA | NA | NA | |
| GSE98526 | GSE98526_A1_vs_UA159T5.txt.gz | anti-conservative | 0.80 | 0.85 | 13 | 193 | 58 | NA | NA | NA | NA | NA | NA | NA | |
| GSE99944 | GSE99944_Digo_expression_SD-T50nM_SD-Ctrl.csv.gz | anti-conservative | 0.65 | 0.47 | 352 | 4346 | 3617 | anti-conservative | 0.86 | 0.23 | 63 | 1036 | 197 | ||
| GSE40218 | GSE40218_processed_DESeq.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.15 | 0.79 | 3 | 8 | 292 | |
| GSE41766 | GSE41766_PRE1-Ox_IBH1-Ox_vs_IBH1-Ox.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.98 | 0.27 | 56 | 1032 | 26 | |
| GSE44233 | GSE44233_processed_data.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.06 | 0.63 | 2 | 3 | 662 | |
| GSE46046 | GSE46046_GenesTable.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.74 | 0.95 | 3 | 40 | 19 | |
| GSE46066 | GSE46066_ICRFVsDMSO.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.13 | 0.64 | 6 | 16 | 838 | |
| GSE50198 | GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-0 | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.88 | 0.29 | 88 | 1470 | 221 | |
| GSE50198 | GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-0 | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.41 | 0.51 | 27 | 212 | 753 | |
| GSE54846 | GSE54846_130529.DESeq.120813.combined-htseq-Luc123-m1_123.HGNC.protein_coding.rsgt20.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.75 | 0.40 | 53 | 750 | 336 | |
| GSE56346 | GSE56346_wtNplus_vs_wtNminus_DESeq_output.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.96 | 0.19 | 89 | 1635 | 64 | |
| GSE58865 | GSE58865_Hyphae_vs_Oidia_DESeq_results.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.96 | 0.01 | 58 | 1060 | 45 | |
| GSE58910 | GSE58910_SenescentAstrocytesDEanalysis_v2.csv.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.47 | 0.66 | 10 | 86 | 209 | |
| GSE61031 | GSE61031_DE_polyaWT_vs_polyaKO.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.19 | 0.72 | 7 | 25 | 578 | |
| GSE61033 | GSE61033_DE_exonWT_vs_exonKOnoRN.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.36 | 0.60 | 20 | 140 | 691 | |
| GSE61033 | GSE61033_DE_intronWT_vs_intronKOnoRN.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.33 | 0.85 | 7 | 47 | 281 | |
| GSE61336 | GSE61336_results_167_vs_WTL.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.75 | 0.34 | 28 | 397 | 178 | |
| GSE61336 | GSE61336_results_167_vs_WTZ.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.84 | 0.36 | 30 | 471 | 106 | |
| GSE61954 | GSE61954_all_genes_expression_values_supp_table.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.40 | 0.44 | 29 | 218 | 822 | |
| GSE63091 | GSE63091_diffana_DESeq_GFP-4A3-Y14_MLN51-UPF1.Ensembl65.tsv.gz-set-0 | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.21 | 0.96 | 1 | 3 | 56 | |
| GSE63836 | GSE63836_C15Dx_versus_Untr.DESeq.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.83 | 0.35 | 70 | 1101 | 270 | |
| GSE63836 | GSE63836_Dx_versus_C15Dx.DESeq.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.33 | 0.82 | 8 | 51 | 312 | |
| GSE65328 | GSE65328_A17_6V.tab.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.06 | 0.89 | 1 | 1 | 219 | |
| GSE65487 | GSE65487_deseq.rminus_rplus.ensembl.csv.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.89 | 0.26 | 91 | 1539 | 224 | |
| GSE65487 | GSE65487_deseq.rplus_gplus.ensembl.csv.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.98 | 0.15 | 116 | 2149 | 55 | |
| GSE67646 | GSE67646_DESeq_1.10.1.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.94 | 0.18 | 82 | 1464 | 103 | |
| GSE67834 | GSE67834_DESeq2_genes_diffexp_by_fc_sp-DCs_vs_t-DCs.csv.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.94 | 0.16 | 88 | 1579 | 99 | |
| GSE67834 | GSE67834_DESeq2_genes_diffexp_by_fc_t-DCs_vs_sp-DCs.csv.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.94 | 0.16 | 88 | 1579 | 99 | |
| GSE69311 | GSE69311_deseq_diff_genes.csv.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.11 | 0.67 | 2 | 5 | 352 | |
| GSE70141 | GSE70141_Ax2_0H_1+2_ChdC_0H_1+2_DESeq.results.genenames.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.79 | 0.25 | 37 | 554 | 189 | |
| GSE70141 | GSE70141_Ax2_10H_1_2_ChdC_12H_1_2_DESeq.results.genenames.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.98 | 0.08 | 94 | 1750 | 38 | |
| GSE72390 | GSE72390_DiffExpr_Location_7-12_vs_1-6_Oncorhynchus_keta_de_novo.xlsx | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.47 | 0.74 | 9 | 76 | 186 | |
| GSE72860 | GSE72860_RNA-seq_log2fdc.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.49 | 0.61 | 22 | 206 | 442 | |
| GSE74920 | GSE74920_SupplementalTable1.xlsx.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.91 | 0.29 | 66 | 1138 | 118 | |
| GSE74920 | GSE74920_SupplementalTable3.xlsx.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.73 | 0.38 | 43 | 592 | 303 | |
| GSE74993 | GSE74993_SupplementalTables.xlsx-sheet-Table S1 | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.91 | 0.29 | 66 | 1138 | 118 | |
| GSE74993 | GSE74993_SupplementalTables.xlsx-sheet-Table S3 | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.73 | 0.38 | 43 | 592 | 303 | |
| GSE75833 | GSE75833_DESeq-processed_FB.control_vs_BR.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.98 | 0.08 | 46 | 855 | 18 | |
| GSE76257 | GSE76257_O-VG_OGS2.csv.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.96 | 0.11 | 35 | 643 | 29 | |
| GSE77351 | GSE77351_Farshchian.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.31 | 0.83 | 6 | 35 | 255 | |
| GSE77901 | GSE77901_SLNCR1_vs_vector.deseq.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.03 | 0.54 | 2 | 1 | 1509 | |
| GSE77901 | GSE77901_SLNCR1cons_vs_vector.deseq.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.01 | 0.86 | 0 | 0 | 472 | |
| GSE77901 | GSE77901_SLNCR1deltacons_vs_vector.deseq.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.61 | 0.53 | 50 | 581 | 613 | |
| GSE77902 | GSE77902_WM1976_siRNA1_vs_control.deseq.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.09 | 0.69 | 5 | 9 | 965 | |
| GSE78240 | GSE78240_DESeq_Output.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.69 | 0.60 | 33 | 432 | 281 | |
| GSE78967 | GSE78967_Deseq_Analysis.xlsx | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.83 | 0.36 | 61 | 958 | 231 | |
| GSE79633 | GSE79633_DESeq2_out_FO_GFP_vs_WT.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.31 | 0.70 | 11 | 67 | 472 | |
| GSE79723 | GSE79723_DEseq_LG1401-LG437-LG8736_LG1405-LG435-LG8737_DEG_list.csv.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.57 | 0.90 | 5 | 53 | 72 | |
| GSE79822 | GSE79822_Deseq_totalRNA.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 1.00 | 0.59 | 10 | 183 | 0 | |
| GSE80128 | GSE80128_P035_DESeq_KO-WT_pathway.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.20 | 0.82 | 3 | 12 | 224 | |
| GSE80135 | GSE80135_Lipo_siProx_sig_results.csv.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.22 | 0.62 | 8 | 35 | 571 | |
| GSE80135 | GSE80135_siNeg_Lipo_results.csv.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.18 | 0.73 | 5 | 17 | 436 | |
| GSE80135 | GSE80135_siNeg_siProx_SC_results.csv.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.13 | 0.62 | 5 | 12 | 642 | |
| GSE81043 | GSE81043_sh109_final_unique_DESeq_InfFixed_DiffExp.xlsx.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.99 | 0.11 | 98 | 1847 | 19 | |
| GSE81059 | GSE81059_cns-control_vs_head-control.csv.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.99 | 0.09 | 85 | 1596 | 13 | |
| GSE81593 | GSE81593_1.Mcf10A_p53delVec_and_p53delHras.xlsx | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.85 | 0.26 | 56 | 902 | 194 | |
| GSE81593 | GSE81593_2.Mcf10A_Vec_and_Hras.xlsx | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.49 | 0.62 | 17 | 160 | 339 | |
| GSE81865 | GSE81865_RNAseq_uninjured-14dpi.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.79 | 0.37 | 29 | 432 | 147 | |
| GSE85328 | GSE85328_Leukaemia_MLL-AF9_RingKO.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.23 | 0.66 | 15 | 64 | 926 | |
| GSE85565 | GSE85565_Result_Table.csv.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.67 | 0.47 | 30 | 385 | 279 | |
| GSE85847 | GSE85847_matrix_rnaseq_GEO_submission_jsantos20160817.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.73 | 0.52 | 40 | 548 | 286 | |
| GSE86521 | GSE86521_DESeq_out_KO_vs_WT.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.52 | 0.69 | 21 | 206 | 367 | |
| GSE87808 | GSE87808_diffExp_Slc7a5_Cerebellum_allGenes.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.14 | 0.82 | 3 | 7 | 320 | |
| GSE89004 | GSE89004_ppGpp0_vs_H78_differential_all.xls.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.95 | 0.16 | 43 | 785 | 39 | |
| GSE93313 | GSE93313_DESeq_2Dvs3D.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.78 | 0.34 | 73 | 1083 | 380 | |
| GSE93313 | GSE93313_DESeq_2DvsTranswell.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.88 | 0.26 | 92 | 1536 | 241 | |
| GSE93313 | GSE93313_DESeq_3DvsTranswell.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.59 | 0.41 | 50 | 556 | 666 | |
| GSE93748 | GSE93748_shTAZ_in_DU145_proceeded_data.xlsx | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.06 | 0.85 | 1 | 1 | 340 | |
| GSE93870 | GSE93870_processed_file.xlsx-sheet-293FT_ZIKV.Vs.293FT_Control.DES | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.19 | 0.79 | 5 | 18 | 432 | |
| GSE93870 | GSE93870_processed_file.xlsx-sheet-CHME_ZIKV.Vs.CHME_Control.DESeq | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.15 | 0.68 | 6 | 18 | 675 | |
| GSE93870 | GSE93870_processed_file.xlsx-sheet-THP1_ZIKV.Vs.THP1_Control.DESeq | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.69 | 0.40 | 48 | 634 | 404 | |
| GSE94280 | GSE94280_DESeq2_results_Y_vs_O.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.93 | 0.28 | 67 | 1182 | 99 | |
| GSE94587 | GSE94587_DESEQ_Female_WT_vs_Female_del.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.38 | 0.83 | 6 | 43 | 180 | |
| GSE94587 | GSE94587_DESEQ_Male_WT_vs_Female_WT.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.67 | 0.54 | 28 | 365 | 261 | |
| GSE94587 | GSE94587_DESEQ_Male_WT_vs_Male_del.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.56 | 0.80 | 10 | 109 | 152 | |
| GSE95337 | GSE95337_DESeq_EH_Control.vs.dKO.res.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.90 | 0.36 | 78 | 1326 | 168 | |
| GSE97395 | GSE97395_Treat_vs_control_diff.txt.gz | NA | NA | NA | NA | NA | NA | NA | anti-conservative | 0.50 | 0.45 | 33 | 313 | 610 |
We need to dicuss some things here.
Reproducibility of ChIP-Seq results is poor and highly dependent on the software tools used (Steinhauser et al. 2016).
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Steinhauser, S., N. Kurzawa, R. Eils, and C. Herrmann. 2016. “A comprehensive comparison of tools for differential ChIP-seq analysis.” Brief. Bioinformatics 17 (6): 953–66.
Temple Lang, Duncan, and the CRAN Team. 2019. XML: Tools for Parsing and Generating Xml Within R and S-Plus. https://CRAN.R-project.org/package=XML.
Wickham, Hadley, and Jennifer Bryan. 2018. Readxl: Read Excel Files. https://CRAN.R-project.org/package=readxl.
Wickham, Hadley, James Hester, and Jeroen Ooms. 2018. Xml2: Parse Xml. https://CRAN.R-project.org/package=xml2.