Introduction

Poor reproducibility, the inability of reproducing, by using the original data, the original data analysis exactly, and replicability, the inability of reproducing, by new experiments, the original data approximately, have become major concerns in experimental biomedical science. So far reproducibility and replicability issues have been mostly addressed in different studies, making it difficult to prise apart their relative contributions to the quality of an experimental system in the wild {Iqbal:2016es}.

Determining the reproducibility of a study is relatively straightforward – one needs to ascertain that the original data analysis methods are described in sufficient detail and that the original data is obtainable in an analysable form.

Reproducibility of a study merely suggest that the data analysis of the original study was done, if not correctly, at least successfully by following the published plan. Reproducibility is a minimum requirement for soundness of a study, but does not guarantee it {Bollen:2015wf}.
Neither does a successful replication generate new evidence in favour or a scientific hypothesis {Goodman:2016bo}.

In contrast, a replication study generates new data by the original experimental procedures (although not necessarily the original data analytic methods). Replicability presupposes that we have access to a sufficiently detailed description of the experimental aspects of the study. Unlike a successful reproduction of a study, a successful replication introduces new evidence to science and thus essentially constitutes a form of meta-analysis, which has the potential to change the conclusions of the original study {Goodman:2016bo}. A successful replication is no guarantee for stability of conclusions – indeed, studies that give negative results individually can point to scientifically meaningful effects, when analysed together {Goodman:2016bo}. Moreover, even when presented with identical data there is room for reasonable disagreements about scientific conclusions among people with different interpretations of the scientific context of the problem {Maivali:2015wr}. There are two major hurdles in the replication business: the high cost of actually repeating experiments and a lack of consensus on how to measure replicability, which has led to the presentation of several potentially contradictory measures of replicability, even in the same paper (REF). This makes it desirable to first estimate in silico, which studies are worth replicating in the lab, and how to best replicate them.

To do this efficiently, we will concentrate on a single experimental system: differential expression profiling by RNA sequencing. RNA-seq has several advantages as a model system for studying experimental quality. It is currently a widely used and fast-growing system, suggesting that many new researchers adopt it every year 1. With a typical experiment costing in the range of … it consumes a great deal of public funding.

Nuleotide sequences and associated metadata is stored in three major public repositories – NCBI Sequence Read Archive (SRA), the European Bioinformatics Institute (EBI), and the DNA Database of Japan (DDBJ) that share data under International Nucleotide Sequence Database Collaboration (INSDC).

In contrast to INSDC, NCBI GEO functional genomics database also requires submission of a processed or summary data from which the conclusions in associated manuscripts are based. GEO arranges submission of the uploaded raw data files to SRA. Importantly, processed summary data allows the direct evaluation and reproduction of analysis.

RNA-seq is usually done in a massively parallel way, testing for differential expression between experiment and control conditions of thousands of RNA pairs. This allows to check the quality of each RNA-seq experiment by examining the distribution of the p values that were calculated by the original authors and were used by them to make inferences about differential expression of individual RNAs in their study (REF). Equally importantly, when these p values indicate a technically successful experiment, they can be further used to calculate the false discovery rate (FDR) and the stable retrospective power (SRP), which together enable to analyse the replication potential of the study (REF). This leads to a quality control procedure that works by sequential elimination and first discards the studies that do not describe their methods or deposit data, then the ones whose data (the p values) indicate serious problems with experimental design and/or data analysis, and finally the studies, whose low power suggests scientific irrelevance. Thus we aim to estimate the general quality of the RNA-seq field, determine the quality of individual studies, estimate the efficiency of potential replication studies, propose improvements in the design of these replication studies, and determine, which step of the RNA-seq process would have the greatest gains in terms of the overall health of the field, should improvements be targeted to it.

We believe that the health of a field of science can be best and cheapest gauged by a sequential elimination procedure: (1) estimating the fraction of reproducible publications in it, (2) actually reproducing its analyses, where possible, and checking for signs of failed experimental design and data analyses, (3) from the publications that by reproducibility criteria are worthy of replication attempts, estimating the statistical power of the experimental systems to provide reproducible results in replication studies, as well as the number of true effects left undiscovered in the original study that could be found in the replication study, (4) estimating the magnitude of changes to the experimental protocol (especially to sample size) that would allow high-powered replication studies.

Here we offer an integrated picture of the reproducibility and expected replicability of a modern and popular method of determining differential expression levels of RNAs, namely expression profiling by RNA sequencing.

We set out to assess following checklist for RNA-seq experiments submitted to Entrez GEO database.

1. Reproducibility: is data usable for reanalysis? (deposition to a public database)
2. Compliance with GEO database submission requirements?
3. How many of the GEO submissions provide p value tables?
4. P histograms – how many experiments are poorly designed/analysed?
5. Replicability measures: SRP, nr of undiscovered effects, expected replication rate, required sample size for high power?

Materials and methods

Results

HT-sequencing expression data in GEO database

To assess the quality of high-throughput sequencing datasets we queried the NCBI GEO database for “expression profiling by high throughput sequencing”. Query retrieved 16427 datasets. GEO database shows exponentially growing number of HT-seq data set submissions between 2006 and 2017 (Fig. 1). First HT-seq data set was submitted to GEO database at 2006-09-08. We limited our query for datasets submitted up to the 2017-12-31 to reduce the number of recent incomplete submissions.

Approximately 68% of GEO data sets (11199) contain data from mouse or human origin (Fig. 1, left facet). The 87% (95%CI, 86.3% to 87.6%) of human and mouse data sets are linked to their primary publication. The proportion of datasets with publications is lower when other taxa are used as model organisms 78% (95%CI, 76.7% to 79.0%)(Fig. 1, right facet). As expected, the gap between published GEO series and published articles is bigger for more recent submissions.

For the human and mouse subset, we were able to identify supplementary files for 97% (13120) of GEO series.
The data sets lacking public supplementary files nevertheless show 83% publication rate (95%CI, 79.6% to 86.6%) which is similar to data sets with supplementary files.

Figure 1: Datasets submitted to NCBI GEO database featuring expression profiling by high-throughput sequencing. GEO series submission dynamics and associated publications of HT-seq data. Left facet, submissions featuring human or mouse data, N = 11199. Right facet, submissions of other taxa, N = 5228. Dashed line, GEO series with publications.

Compliance with GEO database submission requirements and data usability for reanalysis

We sought to determine the compliance with the formal requirements for GEO data submission (https://www.ncbi.nlm.nih.gov/geo/info/seq.html). This pertains to the reproducibitly of data analysis. GEO archive has three required components: metadata, processed data, and raw data. Minimally these processed files are required to contain raw or normalized sequence read counts, or peak files of ChIP-Seq data. While, in the presence of raw data, supplementary data is not strictly neccessary for reproducibility, reproducing analysis from the raw data requires the reproduction of the full analysis, starting from re-aligning sequences to the genome, which can be practically unfeasible.

Supplementary HT-seq files uplodaded to NCBI GEO contain most commonly raw or processed sequence data files as a ‘RAW.tar’ archive and associated automatically generated ‘filelist.txt’ file (Fig. 2). ‘RAW.tar’ archive contains one file per sample and samples can be directly mapped to metadata by using sample name.

Figure 2: Filename extensions and common stubs of supplementary file names from HT-seq datasets submitted to NCBI GEO database. (A) File extensions of supplementary file names. (B) Common stubs of supplementary file names. Stubs were obtained by removing GEO id from supplementary file names and converting string to lower case. Stubs with N > 10 occurences are shown.

RAW.tar files are included in 59% (7727) of GEO series, whereas only RAW.tar and filelist.txt is present in 47% (6203) GEO series (Fig. 2 and 3).

Figure 3: Submission and publication of GEO series with only RAW.tar and filelist.txt supplementary files.

Other common files contain annotations ‘readme.txt’ and processed data: commonly sequence read counts, gene expression analysis results or ChIP-Seq peak counts.

Sequence read counts can be either as raw read counts or normalised read counts. Gene expression analysis of HT-seq data is commonly performed by fitting models to discrete sequence read count data. Normalised sequence read counts are used for plotting and visual evaluation of the analysis results, but cannot be used to directly reproduce gene expression analysis.

However, tables containing top-ranked genes/features (toptables) from gene expression analysis with complete set of raw P values allow direct evaluation of the data and analysis quality underlying tested hypothesis.

Figure 4: Distribution of supplementary files per GEO Accession before and after filtering supplementary files for download. Left, all supplementary files. Right, supplementary files to be downloaded after filtering for tabular formats. Numbers show total number of files, respectively, before and after filtering.

GEO datasets contain most commonly one to two supplementary files per Accession and up to 269 files per Accession (Fig. 4). To reduce number of files to be downloaded from GEO database, based on file extensions and filenames, we excluded from the dataset files that most plausibly don’t contain final processed data in a tabular format, such as binary files, annotations, raw data, graphics, and other non tabular files. This filter reduced the number of files by 62% (Fig. 4) and GEO series by 53%. Resulting dataset consisted of 12776 files from 6178 GEO series to be downloaded.

Figure 5: Retention of HT-seq GEO series and supplementary files in filter for full sets of p values. Arrows from left to right, (1) GEO sets with supplementary files, (2) filter out RAW.tar and filelist.txt files from supplementary file names, (3) supplementary files with flat table formats that were downloaded, (4) tables with p values. Number of p value sets is the number of sets with >1000 features.

Processed data

Figure 6: Global view on number of samples and features of HT-seq experiments. (A) Number of features in GEO series where supplementary file with p values was uploaded (dark grey) compared to all GEO series with supplementary files (light grey). (B) Number of samples in GEO series where p values were available (dark grey) compared to all series with supplementary files (light grey). (C) Mean number of samples was 27 and median 8. Most frequent sample size was 6. Mean number of features was 62096 and median 21120.5. Number of samples was taken from series matrix files and number of features is number of rows in supplementary files. Dashed line denotes cutoff for complete sets of features/p values.

Figure 7: Proportion of true null hypotheses in P value sets. (A) Distribution of estimated \(\pi0\) values in reported GEO HT-seq P value sets. (B) Distribution of \(\pi0\) versus number of features. Blue line, loess fit. P value sets with >1000 features are shown.

Figure 8: Journals publishing HT-seq data. (A) Top 20 journals publishing non-human or -mouse datasets. (B) Top 20 journals publishing human or mouse datasets. (C) Top 10 journals publishing articles reporting P values in GEO supplementary files.

Figure 9: Citation of articles featuring HT-seq data. (A) Distribution of the number of citations and availability of full sets of raw P values in GEO database. (B) Relationship between the proportion of true nulls and number of citations. Data with pi0 near zero (< 0.25) were filtered out because these P values are probably not full sets of raw P values. Blue line, linear model fit. Citation data is from Scopus.

Figure 10: Phylogenetic tree of P value histograms. Tree was obtained by clustering of the empirical cumulative distribution function outputs of P value histograms. Colors show groups obtained by cutting the tree at the height giving six clusters.

Table 1: Summary of histogram types in supplementary files of GEO HT-seq submissions.

Type	n	%
anti-conservative	468	30.0%
bimodal	300	19.3%
conservative	670	43.0%
other	56	3.6%
spiky	57	3.7%
uniform	7	0.4%

Table 2: Histogram types after filtering out non-informative features.

Type	n	%
anti-conservative	173	79.4%
other	37	17.0%
spiky	6	2.8%
uniform	2	0.9%

Table 3: Proportion of histograms that could be fixed by filtering out non-informative features.

Type conversion	n	%
improvement	56	25.7%
no improvement	31	14.2%
same bad	14	6.4%
same good	117	53.7%

Table 4: P value histograms and proportion of true nulls. Histograms are colored according to clustering oftheir empirical cumulative distribution function outputs. Supplementary file names for tables from xls(x) files might be appended with sheet name. This table contains 1558 unique P value histograms from 729 GEO Accessions. pi0 was calculated using limma::propTrueNull() function.

Accession	Supplementary file name (with p-value set id)	Histogram	Type	pi0	Histogram after filter	Type after filter	pi0 after filter
GSE94840	GSE94840_Alox5_vs_Control.all.gene.result.txt.gz		other	NA		other	NA
GSE83664	GSE83664_NS_M_vs_Input.isoform_exp.diff.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Transcript_Sb_36v48.txt.gz		conservative	NA	NA	NA	NA
GSE89364	GSE89364_mav_RNASeq_exp_deqiangs.xlsx		conservative	NA	NA	NA	NA
GSE72712	GSE72712_ESCd_gt70_over_ESCd_40-70.cuffdiff.xlsx-sheet-EST-d_gt70_over_EST-d_40-70		conservative	NA	NA	NA	NA
GSE77303	GSE77303_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE73678	GSE73678_Differential_gene_expression.xlsx.gz		conservative	NA	NA	NA	NA
GSE66652	GSE66652_AS13-C_differential_expression.txt.gz		bimodal	NA	NA	NA	NA
GSE63748	GSE63748_exp_7d4h_diff.txt.gz		conservative	NA	NA	NA	NA
GSE50156	GSE50156_nmt1-hsf1_MMThi-_AND_WT_MMThi-.txt.gz		conservative	NA	NA	NA	NA
GSE94587	GSE94587_DESEQ_Female_WT_vs_Female_del.txt.gz		bimodal	NA		anti-conservative	0.83
GSE83664	GSE83664_NS_vs_Input.isoform_exp.diff.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Transcript_SbvSv_24.txt.gz		conservative	NA	NA	NA	NA
GSE77471	GSE77471_RNASEQ_differential_expression.txt.gz		conservative	NA	NA	NA	NA
GSE72712	GSE72712_ESCd_gt70_over_ESCd_lt40.cuffdiff.xlsx-sheet-EST-d_gt70_over_EST-d_lt40		conservative	NA	NA	NA	NA
GSE70382	GSE70382_DESeq_allresp_vs_nonresp.xlsx-sheet-Blad1		conservative	NA		uniform	NA
GSE61566	GSE61566_isoform_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE61733	GSE61733_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE50156	GSE50156_ssa2D_AND_WT_24oC.txt.gz		conservative	NA	NA	NA	NA
GSE99397	GSE99397_CreNeg-MHCPos_vs_Control.CuffDiff.gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE94587	GSE94587_DESEQ_Male_WT_vs_Female_WT.txt.gz		bimodal	NA		anti-conservative	0.60
GSE90974	GSE90974_Cuffdiff_Transcript_SbvSv_36.txt.gz		conservative	NA	NA	NA	NA
GSE72712	GSE72712_ESCd_gt70_over_ESCu.cuffdiff.xlsx-sheet-EST-d_gt70_over_EST-u.cuffdiff		conservative	NA	NA	NA	NA
GSE64687	GSE64687_FPKM_and_differential_expression_for_mRNA.txt.gz		conservative	NA	NA	NA	NA
GSE66652	GSE66652_S4-C_differential_expression.txt.gz		bimodal	NA	NA	NA	NA
GSE61690	GSE61690_DormantvsNondormant_meristems.txt.gz		bimodal	NA	NA	NA	NA
GSE99397	GSE99397_CreNeg-MHCPos_vs_CrePos-MHCNeg.CuffDiff.gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE94587	GSE94587_DESEQ_Male_WT_vs_Male_del.txt.gz		bimodal	NA		anti-conservative	0.80
GSE90974	GSE90974_Cuffdiff_Transcript_SbvSv_48.txt.gz		conservative	NA	NA	NA	NA
GSE72806	GSE72806_CUFFDIFF_CONTROL_vs_HEAT_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE81522	GSE81522_N2_vs_ok600_gene_differential_expression_testing.txt.gz		conservative	NA	NA	NA	NA
GSE84450	GSE84450_WT_UTvsKO_DTT_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE72712	GSE72712_ESCd_lt40_over_ESCu.cuffdiff.xlsx-sheet-EST-d_lt40_over_EST-u.cuffdiff		conservative	NA	NA	NA	NA
GSE29992	GSE29992_Het1_KO2_expr.txt.gz		bimodal	NA	NA	NA	NA
GSE99397	GSE99397_CrePos-MHCNeg_vs_Control.CuffDiff.gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE87626	GSE87626_nc_vs_19_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Transcript_SbvSv_Global.txt.gz		conservative	NA	NA	NA	NA
GSE75614	GSE75614_processed_data_mrna-seq_differential_expression.xlsx		conservative	NA	NA	NA	NA
GSE72806	GSE72806_CUFFDIFF_CONTROL_vs_SALT_HEAT_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE84450	GSE84450_WT_UTvsKO_UT_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE75787	GSE75787_gene_exp.diff.txt.gz		bimodal	NA	NA	NA	NA
GSE66445	GSE66445_M._a.-pES1-MATmcr3_methane_vs._M.a.-pES1-MATmcr3_methanol_GEO_Processed_data.xlsx-sheet-Sheet1		conservative	NA	NA	NA	NA
GSE63707	GSE63707_DEXSeqResults_IFMWT_03d_vs_jump_0d.txt.gz		bimodal	NA	NA	NA	NA
GSE61566	GSE61566_promoters.diff.gz		conservative	NA	NA	NA	NA
GSE85416	GSE85416_isoform_exp.diff.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Transcript_Sv_24v36.txt.gz		conservative	NA	NA	NA	NA
GSE73321	GSE73321_FW_VS_BW_expression_diff.txt.gz		other	NA	NA	NA	NA
GSE74886	GSE74886_processedFPKMS.xlsx		bimodal	NA	NA	NA	NA
GSE72806	GSE72806_CUFFDIFF_CONTROL_vs_SALT_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE84450	GSE84450_WT_UTvsWT_DTT_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE68229	GSE68229_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE64840	GSE64840_2N_Ts65Dn_MEFs.gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE63707	GSE63707_DEXSeqResults_IFMWT_03d_vs_leg_0d.txt.gz		bimodal	NA	NA	NA	NA
GSE61566	GSE61566_splicing.diff.gz		conservative	NA	NA	NA	NA
GSE54602	GSE54602_D4_D8_D11_D14_isoform_exp.diff.parsed.txt.gz-set-0		bimodal	NA	NA	NA	NA
GSE54602	GSE54602_D4_D8_D11_D14_isoform_exp.diff.parsed.txt.gz-set-1		conservative	NA	NA	NA	NA
GSE54602	GSE54602_D4_D8_D11_D14_isoform_exp.diff.parsed.txt.gz-set-2		conservative	NA	NA	NA	NA
GSE43431	GSE43431_mRNA_STHdh_CUFF_gene_exp.diff.txt.gz		bimodal	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Transcript_Sv_24v48.txt.gz		conservative	NA	NA	NA	NA
GSE87315	GSE87315_CuffDiff_RNA-seq.csv.gz		bimodal	NA	NA	NA	NA
GSE84249	GSE84249_cuffdiff_gene_differential_expression_testing.tab.gz		conservative	NA	NA	NA	NA
GSE84450	GSE84450_WT_UTvsWT_DTT_splicing.diff.gz		conservative	NA	NA	NA	NA
GSE68229	GSE68229_isoform_exp.diff.gz		conservative	NA	NA	NA	NA
GSE70584	GSE70584_Liberman2015_Wholeroot_CUFFLINKS_gene_exp.txt.gz		conservative	NA	NA	NA	NA
GSE67954	GSE67954_CSR1_RNAi_DESeq_output.txt.gz		bimodal	NA		other	NA
GSE63091	GSE63091_diffana_DESeq_GFP-4A3-Y14_MLN51-UPF1.Ensembl65.tsv.gz-set-0		conservative	NA		anti-conservative	0.94
GSE63091	GSE63091_diffana_DESeq_GFP-4A3-Y14_MLN51-UPF1.Ensembl65.tsv.gz-set-1		conservative	NA		anti-conservative	0.99
GSE63091	GSE63091_diffana_DESeq_GFP-4A3-Y14_MLN51-UPF1.Ensembl65.tsv.gz-set-2		conservative	NA		other	NA
GSE63091	GSE63091_diffana_DESeq_GFP-4A3-Y14_MLN51-UPF1.Ensembl65.tsv.gz-set-3		conservative	NA		other	NA
GSE61566	GSE61566_tss_group_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE97395	GSE97395_Treat_vs_control_diff.txt.gz		spiky	NA		anti-conservative	0.60
GSE90974	GSE90974_Cuffdiff_Transcript_Sv_36v48.txt.gz		conservative	NA	NA	NA	NA
GSE84450	GSE84450_WT_UTvsX_DTT_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE73289	GSE73289_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE67954	GSE67954_P_granule_RNAi_DESeq_output.txt.gz		conservative	NA		other	NA
GSE48230	GSE48230_PC3-EMT14-OVOL1_v_PC3-EMT14-OVOL2_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE42443	GSE42443_Brg1cKO_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE85565	GSE85565_Result_Table.csv.gz		spiky	NA		anti-conservative	0.55
GSE90974	GSE90974_Cuffdiff_Transcript_SvvRv_24.txt.gz		conservative	NA	NA	NA	NA
GSE84450	GSE84450_WT_UTvsX_UT_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE81858	GSE81858_AA_ABBB_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE70584	GSE70584_Liberman2015_sorted_CUFFLINKS_gene_exp.txt.gz		bimodal	NA	NA	NA	NA
GSE48230	GSE48230_PC3-EMT14-OVOL1_v_PC3-EMT14-OVOL2_isoform_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Transcript_SvvRv_36.txt.gz		conservative	NA	NA	NA	NA
GSE76304	GSE76304_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE70668	GSE70668_DD_gene_exp.diff.csv.gz		conservative	NA	NA	NA	NA
GSE56013	GSE56013_A.Wildtype_wholefly_DCVrel.Mock.txt.gz		conservative	NA	NA	NA	NA
GSE48230	GSE48230_PC3-EMT14_v_PC3-EMT14-OVOL1_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Transcript_SvvRv_48.txt.gz		conservative	NA	NA	NA	NA
GSE64025	GSE64025_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE68470	GSE68470_xue_etal_edgeR.txt.gz		bimodal	NA	NA	NA	NA
GSE58053	GSE58053_1mm-over-0mm.txt.gz		bimodal	NA	NA	NA	NA
GSE56013	GSE56013_B.G9amutant_wholefly_DCVrel.Mock.txt.gz		conservative	NA	NA	NA	NA
GSE49716	GSE49716_pei1vspei3_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE49700	GSE49700_FB_FLM.RNA.txt.gz		other	NA	NA	NA	NA
GSE48230	GSE48230_PC3-EMT14_v_PC3-EMT14-OVOL1_isoform_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE81437	GSE81437_polyA_differential_gene_expression.txt.gz		conservative	NA	NA	NA	NA
GSE86442	GSE86442_gene_differential_expression.txt.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Transcript_SvvRv_Global.txt.gz		conservative	NA	NA	NA	NA
GSE81493	GSE81493_Differential_gene_expression_analysis.diff.gz		bimodal	NA	NA	NA	NA
GSE56013	GSE56013_E.Wildtype_fatbody_DCVrel.Mock.txt.gz		conservative	NA	NA	NA	NA
GSE48230	GSE48230_PC3-EMT14_v_PC3-EMT14-OVOL2_gene_exp.diff.txt.gz		bimodal	NA	NA	NA	NA
GSE36710	GSE36710_RBFOX1_Splicing_Events.txt.gz		conservative	NA	NA	NA	NA
GSE95679	GSE95679_Mishima_2017_Dcp2.txt.gz		conservative	NA	NA	NA	NA
GSE56013	GSE56013_F.G9amutant_fatbody_DCVrel.Mock.txt.gz		conservative	NA	NA	NA	NA
GSE48230	GSE48230_PC3-EMT14_v_PC3-EMT14-OVOL2_isoform_exp.diff.txt.gz		bimodal	NA	NA	NA	NA
GSE35616	GSE35616_DESeq.txt.gz		spiky	NA		anti-conservative	0.87
GSE36710	GSE36710_RBFOX1_Transcriptional_Events.txt.gz		bimodal	NA		anti-conservative	1.00
GSE87862	GSE87862_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE94120	GSE94120_K562pos_rel_abundance_1x1.txt.gz		conservative	NA	NA	NA	NA
GSE83717	GSE83717_FPKMs_pvalue_matrices.txt.gz		bimodal	NA	NA	NA	NA
GSE85442	GSE85442_cuffdiff.gene_exp_diff.allg.txt.gz		conservative	NA	NA	NA	NA
GSE74220	GSE74220_Expression_of_Protein_Coding_Genes_in_Control_and_IL1b_treated_human_chondrocytes.txt.gz		conservative	NA	NA	NA	NA
GSE65697	GSE65697_RNA-seq.csv.gz		bimodal	NA	NA	NA	NA
GSE56013	GSE56013_I.G9amutant_rel.to_Wildtype_DCV_WholeFly.txt.gz		spiky	NA	NA	NA	NA
GSE63300	GSE63300_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE58082	GSE58082_gene_exp.diff.txt.gz		bimodal	NA	NA	NA	NA
GSE49700	GSE49700_aza.repeats.txt.gz		conservative	NA	NA	NA	NA
GSE49313	GSE49313_DRRi_GFPi_cds_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE48230	GSE48230_PC3-EMT14_v_PC3-Epi_gene_exp.diff.txt.gz		bimodal	NA	NA	NA	NA
GSE94120	GSE94120_SKNSHpos_rel_abundance_1x1.txt.gz		conservative	NA	NA	NA	NA
GSE64641	GSE64641_leaf_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE85442	GSE85442_cuffdiff.isoform_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE77902	GSE77902_WM1976_siRNA1_vs_control.deseq.txt.gz		conservative	NA		anti-conservative	0.78
GSE56013	GSE56013_J.G9amutant_rel.to_Wildtype_DCV_Fatbody.txt.gz		conservative	NA	NA	NA	NA
GSE59850	GSE59850_redgrn_early_cuffdiff_out.diff.txt.gz		bimodal	NA	NA	NA	NA
GSE49700	GSE49700_aza.txt.gz		other	NA	NA	NA	NA
GSE49313	GSE49313_PhanDRR1.2_PhanGFP_cds_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE48230	GSE48230_PC3-EMT14_v_PC3-Epi_isoform_exp.diff.txt.gz		bimodal	NA	NA	NA	NA
GSE47399	GSE47399_diff_exp_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE98869	GSE98869_diffexp.tsv.gz		spiky	NA		other	NA
GSE75640	GSE75640_HR1_vs_control_1_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE94843	GSE94843_cuffdiff_mock_vs_lox.txt.gz		conservative	NA	NA	NA	NA
GSE94120	GSE94120_U2OS-PcTF_rel_abundance_1x3.txt.gz		bimodal	NA	NA	NA	NA
GSE64641	GSE64641_seedling_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE85442	GSE85442_cuffdiff.tss_group_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE77901	GSE77901_SLNCR1_vs_vector.deseq.txt.gz		conservative	NA		anti-conservative	0.65
GSE70806	GSE70806_rf6a_matrix.txt.gz		conservative	NA	NA	NA	NA
GSE68360	GSE68360_cds.diff.gz		conservative	NA	NA	NA	NA
GSE50554	GSE50554_Routine_gene.diff.gz		conservative	NA	NA	NA	NA
GSE75640	GSE75640_HR2_vs_control_2_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE81707	GSE81707_N2_HC125_RNA-seq_PairedEnd_gene_exp_diff.xlsx		conservative	NA	NA	NA	NA
GSE94843	GSE94843_cuffdiff_mock_vs_mnv.txt.gz		conservative	NA	NA	NA	NA
GSE94120	GSE94120_U2OSpos_rel_abundance_1x1.txt.gz		conservative	NA	NA	NA	NA
GSE85863	GSE85863_Galaxy238-_Cuffdiff_on_data_40__data_35_and_others_gene_differential_expression_testing.txt.gz		conservative	NA	NA	NA	NA
GSE77901	GSE77901_SLNCR1cons_vs_vector.deseq.txt.gz		conservative	NA		anti-conservative	0.92
GSE80128	GSE80128_P035_DESeq_KO-WT_pathway.txt.gz		bimodal	NA		anti-conservative	0.80
GSE76125	GSE76125_SenesUntreated_vs_SenesTreated_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE68360	GSE68360_cds_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE47083	GSE47083_WTvsSclKO_WTvsGata12KO.xlsx.gz-set-0		conservative	NA	NA	NA	NA
GSE47083	GSE47083_WTvsSclKO_WTvsGata12KO.xlsx.gz-set-1		conservative	NA	NA	NA	NA
GSE61845	GSE61845_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE59850	GSE59850_redgrn_late_cuffdiff_out.diff.txt.gz		bimodal	NA	NA	NA	NA
GSE52502	GSE52502_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE50554	GSE50554_Routine_isoform.diff.gz		conservative	NA	NA	NA	NA
GSE44333	GSE44333_d33_mock_vs_mhv_res_noNA.txt.gz		bimodal	NA		anti-conservative	0.96
GSE93748	GSE93748_shTAZ_in_DU145_proceeded_data.xlsx		spiky	NA		anti-conservative	0.91
GSE81707	GSE81707_N2_HC125_RNA-seq_SingleEnd_gene_exp_diff.xlsx		conservative	NA	NA	NA	NA
GSE94821	GSE94821_cuffdiff_mock_vs_12hpi.txt.gz		conservative	NA	NA	NA	NA
GSE77422	GSE77422_H358_Control-GNF5.xlsx-sheet-Sheet1		conservative	NA	NA	NA	NA
GSE67001	GSE67001_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE77901	GSE77901_SLNCR1deltacons_vs_vector.deseq.txt.gz		bimodal	NA		anti-conservative	0.57
GSE70314	GSE70314_Gal474_cuffdiff_sictrl.1_siAtad2.1_gene_differential_expression_testing.txt.gz		bimodal	NA	NA	NA	NA
GSE68360	GSE68360_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE61796	GSE61796_NG_Induced_transcript_changes.txt.gz		conservative	NA	NA	NA	NA
GSE50554	GSE50554_Stringent_gene.diff.gz		conservative	NA	NA	NA	NA
GSE49389	GSE49389_RNAseq_gene_exp.txt.gz		conservative	NA	NA	NA	NA
GSE93339	GSE93339_e125_Yap-mt_lung_all_genes.txt.gz		conservative	NA	NA	NA	NA
GSE85385	GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-H3WT_EPZ_x_K27M_EPZ		other	NA	NA	NA	NA
GSE94821	GSE94821_cuffdiff_mock_vs_16hpi.txt.gz		conservative	NA	NA	NA	NA
GSE77422	GSE77422_PC9M_Control-GNF5.xlsx		conservative	NA	NA	NA	NA
GSE77693	GSE77693_deseq.comparison.csv.gz		spiky	NA		anti-conservative	1.00
GSE68360	GSE68360_isoform_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE59850	GSE59850_redrho_late_cuffdiff_out.diff.txt.gz		bimodal	NA	NA	NA	NA
GSE50554	GSE50554_Stringent_isoform.diff.gz		conservative	NA	NA	NA	NA
GSE94821	GSE94821_cuffdiff_mock_vs_20hpi.txt.gz		conservative	NA	NA	NA	NA
GSE77422	GSE77422_PC9M_SCR-AA.xlsx		conservative	NA	NA	NA	NA
GSE75332	GSE75332_Ad_AGGF1vsAd_NC.Differential_analysis_results.txt.gz		other	NA	NA	NA	NA
GSE74893	GSE74893_ctrl_and_Tsc1ckO_gene_exp.txt.gz		conservative	NA	NA	NA	NA
GSE70314	GSE70314_Gal476_cuffdiff_sictrl.1_siAtad2.1_transcript_differential_expression_testing.txt.gz		bimodal	NA	NA	NA	NA
GSE74196	GSE74196_SnapC_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE68360	GSE68360_promoters.diff.gz		bimodal	NA	NA	NA	NA
GSE54240	GSE54240_phoP_RNA-seq.tsv.gz		bimodal	NA	NA	NA	NA
GSE94821	GSE94821_cuffdiff_mock_vs_4hpi.txt.gz		conservative	NA	NA	NA	NA
GSE77422	GSE77422_PC9_Control-GNF5.xlsx		conservative	NA	NA	NA	NA
GSE81593	GSE81593_1.Mcf10A_p53delVec_and_p53delHras.xlsx		bimodal	NA		anti-conservative	0.36
GSE70833	GSE70833_Rennoll_et_al_processed_data.xlsx-sheet-Cuffdiff		conservative	NA	NA	NA	NA
GSE68360	GSE68360_splicing.diff.gz		conservative	NA	NA	NA	NA
GSE63133	GSE63133_D.rerio_SVCV_infected__24K__vs_control_0K.txt.gz		conservative	NA	NA	NA	NA
GSE56052	GSE56052_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE59850	GSE59850_redvio_late_cuffdiff_out.diff.txt.gz		bimodal	NA	NA	NA	NA
GSE57682	GSE57682_Id2_3_Treg_G42_Cuffdiff.txt.gz		conservative	NA	NA	NA	NA
GSE89572	GSE89572_24h_DEGs.txt.gz		conservative	NA	NA	NA	NA
GSE88970	GSE88970_Whsc1_proB_DE.xlsx-sheet-4P_05_WT_vs_KO_results		spiky	NA		anti-conservative	0.88
GSE94821	GSE94821_cuffdiff_mock_vs_8hpi.txt.gz		conservative	NA	NA	NA	NA
GSE77422	GSE77422_PC9_SCR-AA.xlsx		conservative	NA	NA	NA	NA
GSE81593	GSE81593_2.Mcf10A_Vec_and_Hras.xlsx		bimodal	NA		anti-conservative	0.63
GSE83827	GSE83827_WT_vs_tf5.xlsx-sheet-gene_exp_diff		bimodal	NA	NA	NA	NA
GSE70314	GSE70314_Gal485_cuffdiff_sictrl.2_siAtad2.2_gene_differential_expression_testing.txt.gz		bimodal	NA	NA	NA	NA
GSE60630	GSE60630_PDC3_vs_DMSO_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE56073	GSE56073_PARP-1-KD_tss_group_exp.diff.gz		conservative	NA	NA	NA	NA
GSE71295	GSE71295_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE63836	GSE63836_Dx_versus_C15Dx.DESeq.txt.gz		bimodal	NA		anti-conservative	0.83
GSE62668	GSE62668_Embryo.txt.gz		conservative	NA	NA	NA	NA
GSE63133	GSE63133_D.rerio_SVCV_infected__24S__vs_control_0S.txt.gz		conservative	NA	NA	NA	NA
GSE59980	GSE59980_RNA-seq_598-SKD.txt.gz-set-0		spiky	NA	NA	NA	NA
GSE43660	GSE43660_control_vs_IL4_1hr.txt.gz		bimodal	NA	NA	NA	NA
GSE36695	GSE36695_H1H9KSR_SFM.txt.gz		conservative	NA	NA	NA	NA
GSE89572	GSE89572_2h_DEGs.txt.gz		conservative	NA	NA	NA	NA
GSE71133	GSE71133_Supplementary_Table_2.xlsx-sheet-FC > 0		uniform	NA		other	NA
GSE71133	GSE71133_Supplementary_Table_2.xlsx-sheet-FC < 0		uniform	NA		other	NA
GSE60630	GSE60630_PDC3_vs_DMSO_isoform_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE56073	GSE56073_PARylation_tss_group_exp.diff.gz		conservative	NA	NA	NA	NA
GSE59621	GSE59621_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE62668	GSE62668_Sperm.txt.gz		conservative	NA	NA	NA	NA
GSE63133	GSE63133_D.rerio_SVCV_infected__6K__vs_control_0K.txt.gz		conservative	NA	NA	NA	NA
GSE60171	GSE60171_cuffdiff.FGF-1day.vs.iBET-1day.txt.gz		conservative	NA	NA	NA	NA
GSE59850	GSE59850_rhogrn_early_cuffdiff_out.diff.txt.gz		conservative	NA	NA	NA	NA
GSE50739	GSE50739_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE43660	GSE43660_control_vs_IL4_4hr.txt.gz		bimodal	NA	NA	NA	NA
GSE36695	GSE36695_H1H9KSR_hfSFM.txt.gz		conservative	NA	NA	NA	NA
GSE89572	GSE89572_7d_DEGs.txt.gz		conservative	NA	NA	NA	NA
GSE98526	GSE98526_A2_vs_UA159T5.txt.gz		other	NA	NA	NA	NA
GSE94783	GSE94783_rnaseq_process_cuffdiff_global_DMSO_Flut_PPC_genes_diff.tsv.gz		conservative	NA	NA	NA	NA
GSE70314	GSE70314_Gal487_cuffdiff_sictrl.2_siAtad2.2_transcript_differential_expression_testing.txt.gz		bimodal	NA	NA	NA	NA
GSE60630	GSE60630_PDC3_vs_DMSO_splicing.diff.gz		conservative	NA	NA	NA	NA
GSE67029	GSE67029_cuffdiff_mh_h8.txt.gz		bimodal	NA	NA	NA	NA
GSE63133	GSE63133_D.rerio_SVCV_infected__6S__vs_control_0S.txt.gz		conservative	NA	NA	NA	NA
GSE53470	GSE53470_gene_exp_P251_PCJ_3rep_combined.diff.gz		conservative	NA	NA	NA	NA
GSE60171	GSE60171_cuffdiff.FGF-5days.vs.iBET-5days.txt.gz		conservative	NA	NA	NA	NA
GSE43660	GSE43660_control_vs_il33_1hr.txt.gz		bimodal	NA	NA	NA	NA
GSE36695	GSE36695_H1KSR_H1SFM.txt.gz		bimodal	NA	NA	NA	NA
GSE94783	GSE94783_rnaseq_process_cuffdiff_global_DMSO_Flut_genes_diff.tsv.gz		conservative	NA	NA	NA	NA
GSE71159	GSE71159_E3KO_vs_EfCtrl_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE73893	GSE73893_Results_DEXseq.txt.gz		uniform	NA	NA	NA	NA
GSE54473	GSE54473_Suv420_gene_exp.xlsx.gz-sheet-gene_exp		bimodal	NA	NA	NA	NA
GSE53470	GSE53470_gene_exp_P251_PJD_3rep_combined.diff.gz		conservative	NA	NA	NA	NA
GSE54286	GSE54286_Lys_sup_pelle_rs_mvhip_Exp.txt.gz		bimodal	NA	NA	NA	NA
GSE43660	GSE43660_control_vs_il33_4hr.txt.gz		bimodal	NA	NA	NA	NA
GSE36695	GSE36695_H1SFM_H9SFM.txt.gz		conservative	NA	NA	NA	NA
GSE94783	GSE94783_rnaseq_process_cuffdiff_global_DMSO_PPC_genes_diff.tsv.gz		conservative	NA	NA	NA	NA
GSE71159	GSE71159_ECtrl_vs_E3KO_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE58115	GSE58115_4858DM98-3_VS_4858C6_differential_all.txt.gz		bimodal	NA	NA	NA	NA
GSE36695	GSE36695_H1SFM_hfSFM.txt.gz		conservative	NA	NA	NA	NA
GSE35178	GSE35178_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE79724	GSE79724_DEseq_LG3-LG6-LG9_LG2-LG5-LG8_DEG_list.csv.gz		conservative	NA		other	NA
GSE89504	GSE89504_TSS_groups_exp.tabular.txt.gz		bimodal	NA	NA	NA	NA
GSE85328	GSE85328_Leukaemia_MLL-AF9_RingKO.txt.gz		bimodal	NA		anti-conservative	0.76
GSE81575	GSE81575_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE71159	GSE71159_ECtrl_vs_EfCtrl_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE72172	GSE72172_S2_vs_SIN3_187.txt.gz		bimodal	NA	NA	NA	NA
GSE36695	GSE36695_H9KSR_H9SFM.txt.gz		bimodal	NA	NA	NA	NA
GSE35178	GSE35178_isoform_exp.diff.gz		conservative	NA	NA	NA	NA
GSE34329	GSE34329_processed_RNAseq_N_way_cuffdiff_combined_replicates_NIvIvPAvPS1145.diff.gz		conservative	NA	NA	NA	NA
GSE79723	GSE79723_DEseq_LG1401-LG437-LG8736_LG1405-LG435-LG8737_DEG_list.csv.gz		conservative	NA		anti-conservative	0.89
GSE87307	GSE87307_mRNA_processed_results.xlsx		bimodal	NA	NA	NA	NA
GSE62200	GSE62200_Table_S4.xls.gz-sheet-Table S5 N2Y6-E VS LYP9-E		conservative	NA	NA	NA	NA
GSE62200	GSE62200_Table_S4.xls.gz-sheet-Table S4		bimodal	NA	NA	NA	NA
GSE36695	GSE36695_H9KSR_hfSFM.txt.gz		conservative	NA	NA	NA	NA
GSE34274	GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-0		bimodal	NA	NA	NA	NA
GSE34274	GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-1		bimodal	NA	NA	NA	NA
GSE34274	GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-2		bimodal	NA	NA	NA	NA
GSE34274	GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-3		spiky	NA	NA	NA	NA
GSE34274	GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-4		spiky	NA	NA	NA	NA
GSE34274	GSE34274_Reads_Table_1_Original_RV_Mu1_RV_Mu3_RV_Wt1_RV_Wt2.expr.txt.gz-set-5		bimodal	NA	NA	NA	NA
GSE81865	GSE81865_RNAseq_uninjured-14dpi.txt.gz		bimodal	NA		anti-conservative	0.46
GSE76453	GSE76453_cuffdiff_E2.diff.gz		conservative	NA	NA	NA	NA
GSE53599	GSE53599_D5-1322_vs_RLuc-713_24hrs.txt.gz		conservative	NA	NA	NA	NA
GSE36695	GSE36695_H9SFM_hfSFM.txt.gz		conservative	NA	NA	NA	NA
GSE97129	GSE97129_CG9879_vs_WT_CuffDiff_Output_BDGP5.txt.gz		conservative	NA	NA	NA	NA
GSE83265	GSE83265_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE89504	GSE89504_gene_exp.tabular.txt.gz		bimodal	NA	NA	NA	NA
GSE85950	GSE85950_EHEC_plusminus_Symbioflor.xlsx		spiky	NA	NA	NA	NA
GSE76453	GSE76453_cuffdiff_siCtl.diff.gz		conservative	NA	NA	NA	NA
GSE75247	GSE75247_processed_data.txt.gz-set-0		spiky	NA	NA	NA	NA
GSE75247	GSE75247_processed_data.txt.gz-set-1		spiky	NA	NA	NA	NA
GSE69125	GSE69125_10408_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE60441	GSE60441_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE53599	GSE53599_D5-1322_vs_RLuc-713_48hrs.txt.gz		conservative	NA	NA	NA	NA
GSE97129	GSE97129_Can_vs_WT_CuffDiff_Output_BDGP5.txt.gz		bimodal	NA	NA	NA	NA
GSE83819	GSE83819_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE85554	GSE85554_deg_and_counts_table_new_read_counts.txt.gz		spiky	NA		other	NA
GSE76453	GSE76453_cuffdiff_siZNF143.diff.gz		conservative	NA	NA	NA	NA
GSE77398	GSE77398_ribo_cuffdiff_genes.xls.gz		bimodal	NA	NA	NA	NA
GSE66619	GSE66619_DRG_Con_vs_Ips_mrna_gene_exp.diff.txt.gz		bimodal	NA	NA	NA	NA
GSE68813	GSE68813_Woolnough2015_CuffDiff_RNA-seq.xlsx-sheet-rep1 CuffDiff Mock vs AGO2-KD		conservative	NA	NA	NA	NA
GSE68813	GSE68813_Woolnough2015_CuffDiff_RNA-seq.xlsx-sheet-rep2 CuffDiff Mock vs AGO2-KD		conservative	NA	NA	NA	NA
GSE52284	GSE52284_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE53599	GSE53599_D5-2086_vs_RLuc-713_24hrs.txt.gz		conservative	NA	NA	NA	NA
GSE87824	GSE87824_processed_data.xlsx		bimodal	NA	NA	NA	NA
GSE97129	GSE97129_Comr_vs_WT_CuffDiff_Output_BDGP5.txt.gz		bimodal	NA	NA	NA	NA
GSE88700	GSE88700_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE87168	GSE87168_Watson_et_al_TOXSCI-16-0457_Diff_Gen_Exp.csv.gz		conservative	NA	NA	NA	NA
GSE76453	GSE76453_cuffdiff_veh.diff.gz		conservative	NA	NA	NA	NA
GSE77862	GSE77862_nhay_-_Alb-Cre.xlsx		conservative	NA	NA	NA	NA
GSE65406	GSE65406_control_vs_gld1_DESeq.csv.gz		conservative	NA		anti-conservative	1.00
GSE66619	GSE66619_Dorsal_Cord_Ipsi_vs_Con_mrna_gene_exp.diff.txt.gz		bimodal	NA	NA	NA	NA
GSE63889	GSE63889_Diff_0U_120U_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE53599	GSE53599_D5-2086_vs_RLuc-713_48hrs.txt.gz		conservative	NA	NA	NA	NA
GSE97129	GSE97129_Mip40_vs_WT_CuffDiff_Output_BDGP5.txt.gz		bimodal	NA	NA	NA	NA
GSE76257	GSE76257_O-VG_OGS2.csv.gz		bimodal	NA		anti-conservative	0.21
GSE83887	GSE83887_gene_exp_Hyl-2_vs_Hyl-2-G.diff.gz		bimodal	NA	NA	NA	NA
GSE78199	GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-0		conservative	NA	NA	NA	NA
GSE78199	GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-1		conservative	NA	NA	NA	NA
GSE78199	GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-2		conservative	NA	NA	NA	NA
GSE78199	GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-3		conservative	NA	NA	NA	NA
GSE78199	GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-4		conservative	NA	NA	NA	NA
GSE78199	GSE78199_Marsh_Cuffdiff_differential_gene_expression.txt.gz-set-5		conservative	NA	NA	NA	NA
GSE65406	GSE65406_gld1_vs_tumorfast_DESeq.csv.gz		conservative	NA		other	NA
GSE63889	GSE63889_Diff_120U_120C_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE53653	GSE53653_st10.5_Foxh1_MO_gene_exp_diff.txt.gz		conservative	NA	NA	NA	NA
GSE33265	GSE33265_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE83887	GSE83887_gene_exp_N2_vs_Hyl-2.diff.gz		bimodal	NA	NA	NA	NA
GSE83584	GSE83584_processed_data_Day0.txt.gz		conservative	NA	NA	NA	NA
GSE65406	GSE65406_gld1_vs_tumorfed_DESeq.csv.gz		conservative	NA		other	NA
GSE63485	GSE63485_KS_J1Csh63_vs_KS_CTRL.two_replicates.all_gene_exp.tbl.txt.gz		conservative	NA	NA	NA	NA
GSE73077	GSE73077_fpkm_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE53653	GSE53653_st10.5_SB431542_gene_exp_diff.txt.gz		conservative	NA	NA	NA	NA
GSE52551	GSE52551_delta_Rv3263_expr.txt.gz		other	NA	NA	NA	NA
GSE46066	GSE46066_ICRFVsDMSO.txt.gz		bimodal	NA		anti-conservative	0.79
GSE33265	GSE33265_isoform_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE83567	GSE83567_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE83887	GSE83887_gene_exp_N2_vs_N2G.diff.gz		bimodal	NA	NA	NA	NA
GSE77034	GSE77034_aza_vs_PBS.gene_exp.tsv.gz		conservative	NA	NA	NA	NA
GSE83584	GSE83584_processed_data_Day3_5.txt.gz		conservative	NA	NA	NA	NA
GSE77793	GSE77793_gene_exp_diff_fc_hepatocytes_DMSO_GL_TamerSallam_122012.txt.gz		conservative	NA	NA	NA	NA
GSE65406	GSE65406_tumorfed_vs_tumorfast_DESeq.csv.gz		conservative	NA		other	NA
GSE63485	GSE63485_KS_J1Csh95_vs_KS_CTRL.two_replicates.all_gene_exp.tbl.txt.gz		conservative	NA	NA	NA	NA
GSE71369	GSE71369_Processed_data_GRO_seq.xlsx-sheet-untethered_vs_tethered_RPM		bimodal	NA	NA	NA	NA
GSE60756	GSE60756_Richards_092013_B6_vs_Cast_DESeq_Stats-NormSignal_Annotated.txt.gz		uniform	NA		spiky	NA
GSE85402	GSE85402_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE81251	GSE81251_Kdm6a_def_mouse_expression_value.xlsx		spiky	NA		uniform	NA
GSE86837	GSE86837_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE60177	GSE60177_PseudomonasDESeq.txt.gz		conservative	NA	NA	NA	NA
GSE77034	GSE77034_aza_vs_vc.gene_exp.tsv.gz		conservative	NA	NA	NA	NA
GSE80135	GSE80135_Lipo_siProx_sig_results.csv.gz		spiky	NA		anti-conservative	0.73
GSE65406	GSE65406_youngadults_vs_gld1_DESeq.csv.gz		conservative	NA		anti-conservative	1.00
GSE76627	GSE76627_CNBP-cuffdif.xlsx.gz		conservative	NA	NA	NA	NA
GSE63485	GSE63485_shAML1_ETO_vs_shControl.all_gene_exp.tbl.txt.gz		conservative	NA	NA	NA	NA
GSE66575	GSE66575_RNAseq_genes_expression.xlsx-sheet-control_vs_comparison.gene_exp		conservative	NA	NA	NA	NA
GSE66575	GSE66575_RNAseq_genes_expression.xlsx-sheet-control_vs_comparison.isoform_e		conservative	NA	NA	NA	NA
GSE65408	GSE65408_processed_data_file.csv.gz		conservative	NA	NA	NA	NA
GSE40548	GSE40548_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE38414	GSE38414_Maize_Silks_mRNA-Seq_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE89168	GSE89168_36hpupalCNS_WT_dStimKD_CuffDiff.txt.gz		conservative	NA	NA	NA	NA
GSE91060	GSE91060_E11_vs._E16.xls.gz		bimodal	NA	NA	NA	NA
GSE87240	GSE87240_gene_expnorliver.diff.gz		conservative	NA	NA	NA	NA
GSE83405	GSE83405_geneExpDiffData_E14_cells_pnldc1_silencing.xlsx-sheet-Φύλλο1		conservative	NA	NA	NA	NA
GSE77034	GSE77034_combo_vs_PBS.gene_exp.tsv.gz		conservative	NA	NA	NA	NA
GSE85321	GSE85321_Supplemental_Table_2_YAD_RNA_seq_.xls.gz-sheet-YAD_Diff analysis		bimodal	NA	NA	NA	NA
GSE80135	GSE80135_siNeg_Lipo_results.csv.gz		spiky	NA		anti-conservative	0.77
GSE74131	GSE74131_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE75832	GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P14_P2_gene_exp_up		conservative	NA	NA	NA	NA
GSE75832	GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P14_P7_gene_exp_up		conservative	NA	NA	NA	NA
GSE75832	GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P14_P7_gene_exp_down		bimodal	NA	NA	NA	NA
GSE75832	GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P7_P2_gene_exp_up		conservative	NA	NA	NA	NA
GSE75832	GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P7_P2_gene_exp_down		bimodal	NA	NA	NA	NA
GSE46486	GSE46486_young_old_deseq.txt.gz		conservative	NA		spiky	NA
GSE91060	GSE91060_E11_vs._P1.xlsx		bimodal	NA	NA	NA	NA
GSE84145	GSE84145_E12.5RET_WT_NULL.txt.gz		bimodal	NA	NA	NA	NA
GSE87240	GSE87240_gene_expsk.diff.gz		conservative	NA	NA	NA	NA
GSE77034	GSE77034_combo_vs_aza.gene_exp.tsv.gz		conservative	NA	NA	NA	NA
GSE85321	GSE85321_Supplemental_Table_3_YGD_RNA_seq_.xls.gz-sheet-YGD_Diff analysis		bimodal	NA	NA	NA	NA
GSE80135	GSE80135_siNeg_siProx_SC_results.csv.gz		spiky	NA		anti-conservative	0.78
GSE67063	GSE67063_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE75832	GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P2_1_P2_3_gene_exp_up		conservative	NA	NA	NA	NA
GSE75832	GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P2_1_P2_3_gene_exp_down		conservative	NA	NA	NA	NA
GSE75832	GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P7_1_P7_2_gene_exp_up		conservative	NA	NA	NA	NA
GSE75832	GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P7_1_P7_2_gene_exp_down		conservative	NA	NA	NA	NA
GSE75832	GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P14_2_P14_3_gene_exp_up		conservative	NA	NA	NA	NA
GSE75832	GSE75832_DifferentialExpression_withingroup.xlsx-sheet-P14_2_P14_3_gene_exp_down		conservative	NA	NA	NA	NA
GSE55394	GSE55394_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE63758	GSE63758_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE44831	GSE44831_BALBfabD1_BALBmockD1_24hr_post_expr.txt.gz		conservative	NA	NA	NA	NA
GSE38413	GSE38413_Maize_Pericarp_14DAP_mRNA-Seq_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE99347	GSE99347_H2AfZKO_WT.anno.txt.gz		bimodal	NA	NA	NA	NA
GSE89168	GSE89168_72hpupalCNS_WT_dStimKD+Recovery_CuffDiff.txt.gz		conservative	NA	NA	NA	NA
GSE92345	GSE92345_H9_I_pqvalues.poisson.txt.gz		conservative	NA	NA	NA	NA
GSE91060	GSE91060_E16_vs._P1.xlsx		bimodal	NA	NA	NA	NA
GSE87240	GSE87240_hep_gene_exphep.diff.gz		conservative	NA	NA	NA	NA
GSE77034	GSE77034_combo_vs_vc.gene_exp.tsv.gz		conservative	NA	NA	NA	NA
GSE68736	GSE68736_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE79822	GSE79822_Deseq_totalRNA.txt.gz		bimodal	NA		anti-conservative	0.46
GSE64185	GSE64185_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE51893	GSE51893_wt_v_MZeomesa-sphere_gene_exp.txt.gz		conservative	NA	NA	NA	NA
GSE60825	GSE60825_Differential_Expression.xlsx-sheet-Cntrl Hypoxia vs ELT-2 Hypoxia		conservative	NA	NA	NA	NA
GSE60825	GSE60825_Differential_Expression.xlsx-sheet-Cntrl Hypoxia vs ELT-2 Normoxia		conservative	NA	NA	NA	NA
GSE60825	GSE60825_Differential_Expression.xlsx-sheet-Cntrl Normoxia vs Cntrl Hypoxia		conservative	NA	NA	NA	NA
GSE60825	GSE60825_Differential_Expression.xlsx-sheet-Cntrl Normoxia vs ELT-2 Hypoxia		conservative	NA	NA	NA	NA
GSE60825	GSE60825_Differential_Expression.xlsx-sheet-Cntl Normoxia vs ELT-2 Normoxia		conservative	NA	NA	NA	NA
GSE60825	GSE60825_Differential_Expression.xlsx-sheet-ELT-Normoxia vs ELT-2 Hypoxia		conservative	NA	NA	NA	NA
GSE44831	GSE44831_BALBfabD1_BALBmockD1_exp.txt.gz		conservative	NA	NA	NA	NA
GSE92345	GSE92345_H9_P_pqvalues.poisson.txt.gz		bimodal	NA	NA	NA	NA
GSE77034	GSE77034_vc_vs_PBS.gene_exp.tsv.gz		conservative	NA	NA	NA	NA
GSE85321	GSE85321_Supplemental_Table_5_YAR_RNA_seq_.xls.gz-sheet-YAR diff. analysis		bimodal	NA	NA	NA	NA
GSE79822	GSE79822_cuffdiffs_mRNA.txt.gz		conservative	NA	NA	NA	NA
GSE63794	GSE63794_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE44831	GSE44831_BALBfab_BALBmj_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE38413	GSE38413_Maize_Pericarp_25DAP_mRNA-Seq_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE96814	GSE96814_Deseq2_MS2RsaA.xlsx-sheet-Feuil1		other	NA		other	NA
GSE92345	GSE92345_HEK_I_pqvalues.poisson.txt.gz		conservative	NA	NA	NA	NA
GSE77032	GSE77032_aza_vs_PBS.gene_exp.tsv.gz		conservative	NA	NA	NA	NA
GSE85321	GSE85321_Supplemental_Table_6_JHD2_OE_YAD_.xls.gz-sheet-OE_EV_YAD_Diff analysis		conservative	NA	NA	NA	NA
GSE74381	GSE74381_gene_exp_control2vsZeb2cKO2diff.xlsx		bimodal	NA	NA	NA	NA
GSE80068	GSE80068_col_dms3_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE70728	GSE70728_KDM2B_RNAseq_DEG.diff.gz		conservative	NA	NA	NA	NA
GSE69721	GSE69721_UP-_and_Down-regulated_genes.txt.gz		bimodal	NA	NA	NA	NA
GSE64544	GSE64544_LV_processed.txt.gz		conservative	NA	NA	NA	NA
GSE42805	GSE42805_acute_gene.diff.gz		conservative	NA	NA	NA	NA
GSE44831	GSE44831_C57BL6fabD1_C57BL6mockD1_24hr_post_expr.txt.gz		conservative	NA	NA	NA	NA
GSE96814	GSE96814_Deseq_TotRNA.xlsx-sheet-Feuil1		other	NA		other	NA
GSE92345	GSE92345_HEK_P_pqvalues.poisson.txt.gz		bimodal	NA	NA	NA	NA
GSE77032	GSE77032_aza_vs_vc.gene_exp.tsv.gz		conservative	NA	NA	NA	NA
GSE85321	GSE85321_Supplemental_Table_7_JHD2_OE_YAR_.xls.gz-sheet-OE_EV_YAR_Diff analysis		conservative	NA	NA	NA	NA
GSE78834	GSE78834_gene_expression_profiles.txt.gz		bimodal	NA	NA	NA	NA
GSE80068	GSE80068_col_h2h9_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE64544	GSE64544_MV_processed.txt.gz		conservative	NA	NA	NA	NA
GSE62647	GSE62647_Setd8_differential_expression_analyses.txt.gz		conservative	NA	NA	NA	NA
GSE47395	GSE47395_gene_exp.diff.anno.known.csv.gz		conservative	NA	NA	NA	NA
GSE42805	GSE42805_cds.diff.gz		bimodal	NA	NA	NA	NA
GSE52385	GSE52385_siCtrl_VS_siSRA_assemblenewgenes.txt.gz		conservative	NA	NA	NA	NA
GSE44831	GSE44831_C57BL6fabD1_C57BL6mockD1_exp.txt.gz		conservative	NA	NA	NA	NA
GSE87890	GSE87890_vgat1_csv.csv.gz		conservative	NA	NA	NA	NA
GSE92874	GSE92874_RNA.txt.gz		bimodal	NA	NA	NA	NA
GSE95181	GSE95181_HNS_counts_and_DGE.txt.gz		bimodal	NA	NA	NA	NA
GSE66155	GSE66155_regulation.txt.gz		conservative	NA	NA	NA	NA
GSE77032	GSE77032_combo_vs_PBS.gene_exp.tsv.gz		conservative	NA	NA	NA	NA
GSE80707	GSE80707_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE78527	GSE78527_siSNRNP40_siControl_processed.txt.gz		conservative	NA	NA	NA	NA
GSE80068	GSE80068_col_nrpe1_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE42805	GSE42805_cds_exp.diff.gz		conservative	NA	NA	NA	NA
GSE52385	GSE52385_siCtrl_VS_siSRA_notassemblenewgenes.txt.gz		conservative	NA	NA	NA	NA
GSE46807	GSE46807_GEO_values_TAF4_RNAseq_Tophat.Cufflinks_mm9_WeiYi.txt.gz-set-0		bimodal	NA	NA	NA	NA
GSE46807	GSE46807_GEO_values_TAF4_RNAseq_Tophat.Cufflinks_mm9_WeiYi.txt.gz-set-1		bimodal	NA	NA	NA	NA
GSE46807	GSE46807_GEO_values_TAF4_RNAseq_Tophat.Cufflinks_mm9_WeiYi.txt.gz-set-2		conservative	NA	NA	NA	NA
GSE44831	GSE44831_C57BLfab_C57BLmj_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE87890	GSE87890_vgat2_csv.csv.gz		conservative	NA	NA	NA	NA
GSE79677	GSE79677_Crossbred_vs._Purebred_comparison_group.tabular.txt.gz		conservative	NA	NA	NA	NA
GSE78965	GSE78965_C57Bl6_MCS_vs_FST_acute_gene_differential_expression_testing.txt.gz		conservative	NA	NA	NA	NA
GSE77032	GSE77032_combo_vs_aza.gene_exp.tsv.gz		conservative	NA	NA	NA	NA
GSE71916	GSE71916_Expression_Cufflinks_siRbfox1_3+Flag-Rbfox1_C_compared_to_siRbfox1_3+EGFP.txt.gz		other	NA	NA	NA	NA
GSE67787	GSE67787_con_bps_wex_RNAseq_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE70283	GSE70283_cuffdiff_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE66506	GSE66506_DE_analysis_010714.xlsx-sheet-All_Genes		bimodal	NA	NA	NA	NA
GSE42805	GSE42805_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE52450	GSE52450_Cuffdiff_on_pre-pro-B_and_pro-B_aligned_reads_transcript_differential_expression_testing_Bv46.txt.gz		conservative	NA	NA	NA	NA
GSE44831	GSE44831_matrix_BALB_C57BL.txt.gz		conservative	NA	NA	NA	NA
GSE36872	GSE36872_NascentSeq_Mouse_Liver_NormalizedGeneSignal.txt.gz		spiky	NA	NA	NA	NA
GSE87890	GSE87890_vglut1_csv.csv.gz		conservative	NA	NA	NA	NA
GSE98875	GSE98875_Diff.summary.xlsx-sheet-all_genes		conservative	NA	NA	NA	NA
GSE96072	GSE96072_Galaxy106-_Cuffdiff_on_data_40__data_39_and_others_transcript_differential_expression_testing.tabular.txt.gz		bimodal	NA	NA	NA	NA
GSE79677	GSE79677_One_by_one_comparisons.tabular.txt.gz		conservative	NA	NA	NA	NA
GSE78965	GSE78965_C57Bl6_MCS_vs_FST_chronic_gene_differential_expression_testing.txt.gz		conservative	NA	NA	NA	NA
GSE77032	GSE77032_combo_vs_vc.gene_exp.tsv.gz		conservative	NA	NA	NA	NA
GSE73083	GSE73083_3F_Lef1_PlusversusMinusDOX_ProcessedFiles.txt.gz		bimodal	NA	NA	NA	NA
GSE79416	GSE79416_new-lncRNA_transcript_output.xls.gz		bimodal	NA	NA	NA	NA
GSE71916	GSE71916_Expression_Cufflinks_siRbfox1_3+Flag-Rbfox1_N_compared_to_siRbfox1_3+EGFP.txt.gz		other	NA	NA	NA	NA
GSE66478	GSE66478_gene_exp.txt.gz		bimodal	NA	NA	NA	NA
GSE55090	GSE55090_cds_exp.diff.txt.gz		bimodal	NA	NA	NA	NA
GSE42805	GSE42805_isoform_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE50068	GSE50068_Cuffdiff_output.txt.gz		bimodal	NA	NA	NA	NA
GSE36871	GSE36871_RNASeq_Mouse_Liver_NormalizedGeneSignal.txt.gz		spiky	NA	NA	NA	NA
GSE87890	GSE87890_vglut2_csv.csv.gz		conservative	NA	NA	NA	NA
GSE82164	GSE82164_Cuffdiff_gene_differential_expression_testing.tabular.txt.gz		conservative	NA	NA	NA	NA
GSE96072	GSE96072_Galaxy24-_Cuffdiff_on_data_7__data_6_and_others_transcript_differential_expression_testing.tabular.txt.gz		bimodal	NA	NA	NA	NA
GSE77032	GSE77032_vc_vs_PBS.gene_exp.tsv.gz		conservative	NA	NA	NA	NA
GSE77351	GSE77351_Farshchian.txt.gz		spiky	NA		anti-conservative	0.89
GSE73082	GSE73082_F_Sp5_PlusversusMinusDOX_ProcessedFiles.txt.gz		bimodal	NA	NA	NA	NA
GSE77218	GSE77218_A3_A2.xlsx-sheet-express		bimodal	NA	NA	NA	NA
GSE70766	GSE70766_Differential_expression.txt.gz		bimodal	NA	NA	NA	NA
GSE68160	GSE68160_GRdim-RNASeq.xlsx		bimodal	NA	NA	NA	NA
GSE66478	GSE66478_isoform_exp.txt.gz		conservative	NA	NA	NA	NA
GSE55090	GSE55090_gene_exp.diff.txt.gz		bimodal	NA	NA	NA	NA
GSE42805	GSE42805_promoters.diff.gz		bimodal	NA	NA	NA	NA
GSE44846	GSE44846_O157_genome_total.xlsx.gz-sheet-Sheet1		bimodal	NA	NA	NA	NA
GSE33141	GSE33141_TopHatTranscriptsFPKM.xls.gz-sheet-mRNA-Transcripts-FPKM		other	NA	NA	NA	NA
GSE33141	GSE33141_TopHatTranscriptsFPKM.xls.gz-sheet-Pseudogenes-FPKM		other	NA	NA	NA	NA
GSE87890	GSE87890_vglut3_csv.csv.gz		conservative	NA	NA	NA	NA
GSE96072	GSE96072_Galaxy55-_Cuffdiff_on_data_2__data_4_and_others_transcript_differential_expression_testing.tabular.txt.gz		bimodal	NA	NA	NA	NA
GSE76771	GSE76771_ALL_gene_expression.txt.gz		conservative	NA	NA	NA	NA
GSE77218	GSE77218_A4_A2.xlsx-sheet-express		bimodal	NA	NA	NA	NA
GSE70711	GSE70711_IRF4hi.vs.IRF8hi.gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE55870	GSE55870_CAF90vsNF1493.xlsx.gz		conservative	NA		other	NA
GSE55090	GSE55090_isoform_exp.diff.txt.gz		bimodal	NA	NA	NA	NA
GSE42805	GSE42805_splicing.diff.gz		bimodal	NA	NA	NA	NA
GSE82164	GSE82164_Cuffdiff_transcript_differential_expression_testing.tabular.txt.gz		conservative	NA	NA	NA	NA
GSE58467	GSE58467_FPKM.txt.gz		bimodal	NA	NA	NA	NA
GSE80370	GSE80370_col_morc6_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE77218	GSE77218_A4_A3.xlsx-sheet-express		bimodal	NA	NA	NA	NA
GSE70711	GSE70711_IRF8cKO_GCBCell_RPKM_exp_1.csv.gz		conservative	NA	NA	NA	NA
GSE56966	GSE56966_IL6Ra_WT.xlsx.gz-sheet-gene_exp		other	NA	NA	NA	NA
GSE56966	GSE56966_IL6Ra_WT.xlsx.gz-sheet-gene_notest		conservative	NA	NA	NA	NA
GSE55090	GSE55090_tss_group_exp.diff.txt.gz		bimodal	NA	NA	NA	NA
GSE42805	GSE42805_tss_group_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE83560	GSE83560_degTest_byCuffdiff.xlsx-sheet-T_11_12_P-T_11_12_C		conservative	NA	NA	NA	NA
GSE83560	GSE83560_degTest_byCuffdiff.xlsx-sheet-T_11_19_1_P-T_11_19_1_C		conservative	NA	NA	NA	NA
GSE83560	GSE83560_degTest_byCuffdiff.xlsx-sheet-T_72_P-T_72_C		conservative	NA	NA	NA	NA
GSE79408	GSE79408_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE90876	GSE90876_Cuffdiff_PSM_vs_SM.txt.gz		conservative	NA	NA	NA	NA
GSE77113	GSE77113_GC_WT_vs_Hdac3KO.diff.gz		conservative	NA	NA	NA	NA
GSE80370	GSE80370_col_suvh2suvh9_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE70711	GSE70711_IRF8cKO_GCBCell_RPKM_exp_2.csv.gz		conservative	NA	NA	NA	NA
GSE67437	GSE67437_KO-ILC2-mLN_021815_vs_WT-ILC2-mLN_021815.txt.gz		conservative	NA	NA	NA	NA
GSE56966	GSE56966_MyD88_WT.xlsx.gz-sheet-gene_exp		other	NA	NA	NA	NA
GSE56966	GSE56966_MyD88_WT.xlsx.gz-sheet-gene_notest		conservative	NA	NA	NA	NA
GSE51975	GSE51975_C_v_OVOL1_2_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE81055	GSE81055_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE90876	GSE90876_Cuffdiff_SM_vs_SM_Dev.txt.gz		conservative	NA	NA	NA	NA
GSE92246	GSE92246_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE81114	GSE81114_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE77113	GSE77113_Hdac3KO_non-GC_vs_GC.diff.gz		conservative	NA	NA	NA	NA
GSE77675	GSE77675_Old_vs_Young_isoforms_expression.txt.gz		bimodal	NA	NA	NA	NA
GSE71527	GSE71527_KO_SNI_Sal_vs_KO_SNI_DMI.xlsx		conservative	NA	NA	NA	NA
GSE60642	GSE60642_AB056_2.xlsx.gz-set-0		bimodal	NA	NA	NA	NA
GSE60642	GSE60642_AB056_2.xlsx.gz-set-1		bimodal	NA	NA	NA	NA
GSE60642	GSE60642_AB056_2.xlsx.gz-set-2		bimodal	NA	NA	NA	NA
GSE59017	GSE59017_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE57396	GSE57396_Cuttdiff_cds_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE51975	GSE51975_C_v_OVOL1_2_isoform_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE81055	GSE81055_gene_exp.diff_bias.txt.gz		conservative	NA	NA	NA	NA
GSE77229	GSE77229_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE95234	GSE95234_IPInputFPKM.xlsx		conservative	NA	NA	NA	NA
GSE79633	GSE79633_DESeq2_out_FO_GFP_vs_WT.txt.gz		spiky	NA		anti-conservative	0.77
GSE77113	GSE77113_WT_non-GC_vs_GC.diff.gz		bimodal	NA	NA	NA	NA
GSE71527	GSE71527_KO_naive_vs_KO_SNI_Sal.xlsx		conservative	NA	NA	NA	NA
GSE68806	GSE68806_Galaxy_data_Cuffdiff.txt.gz		conservative	NA	NA	NA	NA
GSE67335	GSE67335_LEF1_Th1.Vs.pMIG_Th1.DESeq_Analysis_DE_Genes.txt.gz		other	NA		other	NA
GSE60641	GSE60641_AB03_2.xlsx.gz		bimodal	NA	NA	NA	NA
GSE57227	GSE57227_PHH_GW_vs_DMSO_RNA_seq_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE59017	GSE59017_isoform_exp.diff.gz		conservative	NA	NA	NA	NA
GSE51975	GSE51975_C_v_OVOL1_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE84301	GSE84301_Pub_vs_Prepub.Differential_analysis_results.txt.gz		conservative	NA	NA	NA	NA
GSE95234	GSE95234_NotInfectedInfectedFPKM.xlsx-set-0		conservative	NA	NA	NA	NA
GSE95234	GSE95234_NotInfectedInfectedFPKM.xlsx-set-1		conservative	NA	NA	NA	NA
GSE77113	GSE77113_non-GC_WT_vs_Hdac3KO.diff.gz		conservative	NA	NA	NA	NA
GSE86202	GSE86202_1_TreatVSControl_circRNA_differential_expression.xlsx		spiky	NA	NA	NA	NA
GSE71527	GSE71527_WT_SNI_DMI_vs_KO_SNI_DMI.xlsx		conservative	NA	NA	NA	NA
GSE61351	GSE61351_Cont_ComparedTo_PTH_D28_CuffDiffAnalysis1.xls.gz		bimodal	NA	NA	NA	NA
GSE64757	GSE64757_All_FPKMs_GEO.csv.gz		conservative	NA	NA	NA	NA
GSE54433	GSE54433_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE51975	GSE51975_C_v_OVOL1_isoform_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE34097	GSE34097_aff2_genes_cufflinks.txt.gz		conservative	NA	NA	NA	NA
GSE97256	GSE97256_Y1differentialGenes.tab.gz		conservative	NA	NA	NA	NA
GSE63224	GSE63224_All_unigene_expression.txt.gz-set-0		other	NA	NA	NA	NA
GSE63224	GSE63224_All_unigene_expression.txt.gz-set-1		other	NA	NA	NA	NA
GSE63224	GSE63224_All_unigene_expression.txt.gz-set-2		other	NA	NA	NA	NA
GSE63224	GSE63224_All_unigene_expression.txt.gz-set-3		other	NA	NA	NA	NA
GSE63224	GSE63224_All_unigene_expression.txt.gz-set-4		other	NA	NA	NA	NA
GSE79758	GSE79758_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE76868	GSE76868_Table_S1_RNA-seq.xlsx		bimodal	NA	NA	NA	NA
GSE71527	GSE71527_WT_SNI_Sal_vs_KO_SNI_Sal.xlsx		conservative	NA	NA	NA	NA
GSE63810	GSE63810_BCKO_RNASeq_Data.xlsx-sheet-GenesDiffExp		conservative	NA	NA	NA	NA
GSE51975	GSE51975_C_v_OVOL2_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE34097	GSE34097_aff3_genes_cufflinks.txt.gz		conservative	NA	NA	NA	NA
GSE83828	GSE83828_Gene_expression_data.xlsx		bimodal	NA	NA	NA	NA
GSE86202	GSE86202_Gene_differential_expression.xlsx		conservative	NA	NA	NA	NA
GSE80718	GSE80718_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE73940	GSE73940_cuffdiff.gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE71527	GSE71527_WT_SNI_Sal_vs_WT_SNI_DMI.xlsx		conservative	NA	NA	NA	NA
GSE51975	GSE51975_C_v_OVOL2_isoform_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE44536	GSE44536_GEO_Processed_file_excel.xlsx.gz-sheet-FPKM_NC_009338		bimodal	NA	NA	NA	NA
GSE34097	GSE34097_aff4_genes_cufflinks.txt.gz		conservative	NA	NA	NA	NA
GSE54641	GSE54641_DESeq.txt.gz		conservative	NA		anti-conservative	0.98
GSE80349	GSE80349_results.txt.gz-set-1		conservative	NA	NA	NA	NA
GSE73940	GSE73940_cuffdiff.isoform_exp.diff.gz		conservative	NA	NA	NA	NA
GSE71527	GSE71527_WT_naive_vs_KO_naive.xlsx		conservative	NA	NA	NA	NA
GSE71252	GSE71252_Akdogan_RNASeq_Cuffdiff_JUL232015.xlsx-sheet-geneExpDiffData		bimodal	NA	NA	NA	NA
GSE71252	GSE71252_Akdogan_RNASeq_Cuffdiff_JUL232015.xlsx-sheet-isoformExpDiffData		bimodal	NA	NA	NA	NA
GSE65025	GSE65025_WT-HSF_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE54641	GSE54641_cuffdiff2_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE61969	GSE61969_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE55682	GSE55682_16h.xls.gz		other	NA	NA	NA	NA
GSE72105	GSE72105_Differential_Gene_Expression_Summary_D0.txt.gz		bimodal	NA	NA	NA	NA
GSE72994	GSE72994_cds_exp.diff.gz		conservative	NA	NA	NA	NA
GSE71527	GSE71527_WT_naive_vs_WT_SNI_Sal.xlsx		conservative	NA	NA	NA	NA
GSE59481	GSE59481_PIG_vs_GFP_DE_genes.txt.gz		bimodal	NA	NA	NA	NA
GSE65024	GSE65024_WT-bhlh_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE61238	GSE61238_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE58326	GSE58326_gene_exp.txt.gz		bimodal	NA	NA	NA	NA
GSE41908	GSE41908_E11.5_E13.5f_cuffdiff1.2.txt.gz		conservative	NA	NA	NA	NA
GSE98759	GSE98759_gene_exp.txt.gz		other	NA		other	NA
GSE76865	GSE76865_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE81059	GSE81059_cns-control_vs_cns-hh.csv.gz		conservative	NA		other	NA
GSE55682	GSE55682_20h.xls.gz		other	NA	NA	NA	NA
GSE72105	GSE72105_Differential_Gene_Expression_Summary_D6.txt.gz		bimodal	NA	NA	NA	NA
GSE72994	GSE72994_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE65328	GSE65328_A17_6V.tab.gz		conservative	NA		anti-conservative	0.92
GSE65022	GSE65022_cuffdiff-WT_CD_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE41908	GSE41908_E11.5_E13.5m_cuffdiff1.2.txt.gz		conservative	NA	NA	NA	NA
GSE93280	GSE93280_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE76864	GSE76864_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE81059	GSE81059_cns-control_vs_cns-ptc.csv.gz		conservative	NA		other	NA
GSE86159	GSE86159_significance_calls_genes_overexpression.txt.gz		conservative	NA	NA	NA	NA
GSE55682	GSE55682_24h.xls.gz		other	NA	NA	NA	NA
GSE72105	GSE72105_Differential_Gene_Expression_Summary_myotubes.txt.gz		conservative	NA	NA	NA	NA
GSE72994	GSE72994_isoform_exp.diff.gz		conservative	NA	NA	NA	NA
GSE59020	GSE59020_ETS1_gene_exp_all.diff.gz		conservative	NA	NA	NA	NA
GSE41908	GSE41908_E9.5_E11.5_cuffdiff1.2.txt.gz		conservative	NA	NA	NA	NA
GSE95481	GSE95481_GCN5_RNAi_vs_WT_root_tip_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE86159	GSE86159_significance_calls_genes_tam_timecourse.txt.gz		conservative	NA	NA	NA	NA
GSE78902	GSE78902_DEseq_DB001-DB004_DB002-DB003_DEG_list.csv.gz		other	NA		other	NA
GSE78996	GSE78996_CTR_vs_EAE_Cuffdiff_analysis.xlsx		bimodal	NA	NA	NA	NA
GSE55682	GSE55682_48h.xls.gz		other	NA	NA	NA	NA
GSE53040	GSE53040_wtDMSOvswtD1.txt.gz		bimodal	NA	NA	NA	NA
GSE72105	GSE72105_Differential_Gene_Expression_Summary_usp10.txt.gz		conservative	NA	NA	NA	NA
GSE72994	GSE72994_promoters.diff.gz		conservative	NA	NA	NA	NA
GSE59020	GSE59020_U0126_gene_exp_all.diff.gz		conservative	NA	NA	NA	NA
GSE89110	GSE89110_RNAseq_shPFKB4_p53_logFC.txt.gz-set-0		bimodal	NA	NA	NA	NA
GSE89110	GSE89110_RNAseq_shPFKB4_p53_logFC.txt.gz-set-1		bimodal	NA	NA	NA	NA
GSE89110	GSE89110_RNAseq_shPFKB4_p53_logFC.txt.gz-set-2		bimodal	NA	NA	NA	NA
GSE89110	GSE89110_RNAseq_shPFKB4_p53_logFC.txt.gz-set-3		bimodal	NA	NA	NA	NA
GSE95481	GSE95481_GCN5_RNAi_vs_WT_whole_root_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE95850	GSE95850_RUCA-I_WT_vs_miR-203_KO_gene_expression.csv.gz		other	NA	NA	NA	NA
GSE86187	GSE86187_p0wt-ko-gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE93280	GSE93280_isoform_exp.diff.gz		conservative	NA	NA	NA	NA
GSE72762	GSE72762_DEseq_LS023-LS024-LS025_LS030-LS031-LS032_DEG_list.txt.gz		conservative	NA		other	NA
GSE72059	GSE72059_21_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE55682	GSE55682_Baf250a6days.csv.gz		other	NA	NA	NA	NA
GSE53040	GSE53040_wtDMSOvswtTX129.txt.gz		conservative	NA	NA	NA	NA
GSE72994	GSE72994_tss_group_exp.diff.gz		conservative	NA	NA	NA	NA
GSE69113	GSE69113_AIPVUIP_differential_expression.txt.gz		other	NA	NA	NA	NA
GSE47095	GSE47095_splicing_diff.txt.gz		bimodal	NA	NA	NA	NA
GSE86187	GSE86187_p6wt-ko_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE81007	GSE81007_cds.diff.gz		conservative	NA	NA	NA	NA
GSE72761	GSE72761_DESeq_LS007-LS008-LS010_LS015-LS016-LS018_DEG_list.txt.gz		conservative	NA		other	NA
GSE53040	GSE53040_wtDMSOvswtTX34.txt.gz		bimodal	NA	NA	NA	NA
GSE69113	GSE69113_BIPVUIP_differential_expression.txt.gz		other	NA	NA	NA	NA
GSE49843	GSE49843_gene_exp.diff_22345-22353.txt.gz		conservative	NA	NA	NA	NA
GSE43194	GSE43194_E11_ICR_abundance_rep1.txt.gz-set-0		bimodal	NA	NA	NA	NA
GSE43194	GSE43194_E11_ICR_abundance_rep1.txt.gz-set-1		spiky	NA	NA	NA	NA
GSE43194	GSE43194_E11_ICR_abundance_rep1.txt.gz-set-2		spiky	NA	NA	NA	NA
GSE43614	GSE43614_diff_out.txt.gz		other	NA	NA	NA	NA
GSE98739	GSE98739_Q111SST_vs_Q111DOP_DEGs_with_fpkm.diff.gz		bimodal	NA	NA	NA	NA
GSE80503	GSE80503_RNASeqProcessedDESeqData.xlsx		conservative	NA	NA	NA	NA
GSE72764	GSE72764_DEseq_LS39-LS40-LS42_LS44-LS45-LS48_DEG_list.csv.gz		conservative	NA		other	NA
GSE77499	GSE77499_Dd2CQ_Dd2_3D7_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE53040	GSE53040_wtDMSOvswtTX87.txt.gz		conservative	NA	NA	NA	NA
GSE61202	GSE61202_NICvsMOdifferential_expression.txt.gz		conservative	NA	NA	NA	NA
GSE58464	GSE58464_RNA-seq_tophat_microrazers_results.txt.gz-set-0		conservative	NA	NA	NA	NA
GSE58464	GSE58464_RNA-seq_tophat_microrazers_results.txt.gz-set-1		conservative	NA	NA	NA	NA
GSE43194	GSE43194_E11_ICR_abundance_rep2.txt.gz-set-0		spiky	NA	NA	NA	NA
GSE43194	GSE43194_E11_ICR_abundance_rep2.txt.gz-set-1		spiky	NA	NA	NA	NA
GSE43194	GSE43194_E11_ICR_abundance_rep2.txt.gz-set-2		spiky	NA	NA	NA	NA
GSE33782	GSE33782_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE98739	GSE98739_Q7SST_vs_Q111DOP_DEGs_with_fpkm.diff.gz		bimodal	NA	NA	NA	NA
GSE86211	GSE86211_CmrA_transcriptome_Expression_of_all_genes.xlsx-sheet-PA14vsPJ01dT		other	NA	NA	NA	NA
GSE81007	GSE81007_cds_exp.diff.gz		conservative	NA	NA	NA	NA
GSE87635	GSE87635_CNOT3KO-WT.txt.gz		conservative	NA	NA	NA	NA
GSE77499	GSE77499_Dd2CQ_Dd2_3D7_isoform_exp.diff.gz		conservative	NA	NA	NA	NA
GSE66158	GSE66158_all_genes_FPKM.txt.gz		bimodal	NA	NA	NA	NA
GSE56284	GSE56284_gene_exp.txt.gz		bimodal	NA	NA	NA	NA
GSE53976	GSE53976_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE43194	GSE43194_HH18chick_abundance.txt.gz-set-0		spiky	NA	NA	NA	NA
GSE43194	GSE43194_HH18chick_abundance.txt.gz-set-1		spiky	NA	NA	NA	NA
GSE43194	GSE43194_HH18chick_abundance.txt.gz-set-2		bimodal	NA	NA	NA	NA
GSE33782	GSE33782_isoform_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE98739	GSE98739_Q7SST_vs_Q111SST_DEGs_with_fpkm.diff.gz		bimodal	NA	NA	NA	NA
GSE77769	GSE77769_RNA_diff_final.txt.gz		spiky	NA	NA	NA	NA
GSE81007	GSE81007_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE36005	GSE36005_emo_gene.diff.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Gene_Rb_24v36.txt.gz		conservative	NA	NA	NA	NA
GSE82210	GSE82210_cuffdiff_lncOL1KO_vs_Ctrl.gene.fpkm.txt.gz		conservative	NA	NA	NA	NA
GSE83137	GSE83137_H2_vs_Lanact_pval.csv.gz		other	NA		other	NA
GSE58586	GSE58586_RNAseq-PDX-paired-tr-vs-untr_allintensity-filtered.txt.gz		other	NA	NA	NA	NA
GSE49147	GSE49147_ESC_KO_vs_WT.txt.gz		conservative	NA	NA	NA	NA
GSE36005	GSE36005_res_gene.diff.gz		conservative	NA	NA	NA	NA
GSE32038	GSE32038_cds_exp.diff.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Gene_Rb_24v48.txt.gz		conservative	NA	NA	NA	NA
GSE91075	GSE91075_gene_exp_WT1_KO1.txt.gz		conservative	NA	NA	NA	NA
GSE81007	GSE81007_isoform_exp.diff.gz		conservative	NA	NA	NA	NA
GSE49147	GSE49147_iPS_PF1_vs_PF2.txt.gz		conservative	NA	NA	NA	NA
GSE36005	GSE36005_sus_gene.diff.gz		bimodal	NA	NA	NA	NA
GSE32038	GSE32038_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Gene_Rb_36v48.txt.gz		conservative	NA	NA	NA	NA
GSE91075	GSE91075_gene_exp_WT2_KO2.txt.gz		conservative	NA	NA	NA	NA
GSE77185	GSE77185_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE74148	GSE74148_RNA-seq0415.xlsx-set-0		conservative	NA	NA	NA	NA
GSE74148	GSE74148_RNA-seq0415.xlsx-set-1		conservative	NA	NA	NA	NA
GSE74148	GSE74148_RNA-seq0415.xlsx-set-2		conservative	NA	NA	NA	NA
GSE74148	GSE74148_RNA-seq0415.xlsx-set-3		bimodal	NA	NA	NA	NA
GSE74148	GSE74148_RNA-seq0415.xlsx-set-4		bimodal	NA	NA	NA	NA
GSE74148	GSE74148_RNA-seq0415.xlsx-set-5		conservative	NA	NA	NA	NA
GSE58609	GSE58609_MEF_WT_DKO.deseq.txt.gz-set-0		conservative	NA	NA	NA	NA
GSE58609	GSE58609_MEF_WT_DKO.deseq.txt.gz-set-1		conservative	NA	NA	NA	NA
GSE71948	GSE71948_RNASeqProcessedDESeqData.txt.gz		conservative	NA		other	NA
GSE49147	GSE49147_iPS_TTF1_vs_TTF2.txt.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Gene_RbvRv_24.txt.gz		conservative	NA	NA	NA	NA
GSE81007	GSE81007_promoters.diff.gz		conservative	NA	NA	NA	NA
GSE65321	GSE65321_RNASeqProcessedDESeqData.txt.gz		bimodal	NA	NA	NA	NA
GSE63750	GSE63750_chemhigh-batch-result-using-R-DeSeq.csv.gz		bimodal	NA		other	NA
GSE58405	GSE58405_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE32038	GSE32038_isoform_exp.diff.gz		conservative	NA	NA	NA	NA
GSE73972	GSE73972_atxvsWT_gene_exp_diff.txt.gz		bimodal	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Gene_RbvRv_36.txt.gz		conservative	NA	NA	NA	NA
GSE93620	GSE93620_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE81007	GSE81007_splicing.diff.gz		conservative	NA	NA	NA	NA
GSE78878	GSE78878_30Cvs30P_score.txt.gz		bimodal	NA	NA	NA	NA
GSE64854	GSE64854_cds.diff.gz		conservative	NA	NA	NA	NA
GSE65321	GSE65321_RNASeqProcessedDESeqData_GSM1631482-GSM1631483.txt.gz		conservative	NA	NA	NA	NA
GSE63555	GSE63555_Ago2_immunoprecipitation_cuffdiff_fpkm.txt.gz		conservative	NA	NA	NA	NA
GSE63750	GSE63750_chemlow-batch-result-using-R-DeSeq.csv.gz		other	NA		other	NA
GSE58405	GSE58405_isoform_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE53022	GSE53022_mt_vs_wt.DESeq.txt.gz		conservative	NA		other	NA
GSE90974	GSE90974_Cuffdiff_Gene_RbvRv_48.txt.gz		conservative	NA	NA	NA	NA
GSE81007	GSE81007_tss_group_exp.diff.gz		conservative	NA	NA	NA	NA
GSE78878	GSE78878_30CvsN2C_score.txt.gz		bimodal	NA	NA	NA	NA
GSE80433	GSE80433_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE79286	GSE79286_CYC2vsWT_Conj-2.5hr_RNA-Seq.xlsx-sheet-gene_exp		bimodal	NA	NA	NA	NA
GSE64854	GSE64854_cds_exp.diff.gz		conservative	NA	NA	NA	NA
GSE63555	GSE63555_Gene_expression_cuffdiff_fpkm.txt.gz		conservative	NA	NA	NA	NA
GSE50557	GSE50557_rnaseq-lbl1-Cuffdiff_gene_expression.txt.gz		conservative	NA	NA	NA	NA
GSE92989	GSE92989_Drought_2_days.txt.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Gene_RbvRv_Global.txt.gz		conservative	NA	NA	NA	NA
GSE74929	GSE74929_ANOVA_gene_rpkm.txt.gz-set-0		other	NA	NA	NA	NA
GSE74929	GSE74929_ANOVA_gene_rpkm.txt.gz-set-1		other	NA	NA	NA	NA
GSE79507	GSE79507_minipig.txt.gz		bimodal	NA	NA	NA	NA
GSE81100	GSE81100_old_ARSER_output.txt.gz		bimodal	NA	NA	NA	NA
GSE61336	GSE61336_results_167_vs_WTL.txt.gz		bimodal	NA		anti-conservative	0.42
GSE78878	GSE78878_30PvsN2P_score.txt.gz		bimodal	NA	NA	NA	NA
GSE85576	GSE85576_Supplementary_Table_1.xlsx-sheet-MagohMos2_vs_Control		conservative	NA	NA	NA	NA
GSE84606	GSE84606_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE79286	GSE79286_CYC2vsWT_Conj-2hr_RNA-Seq.xlsx-sheet-C2vWT-2hr genes		bimodal	NA	NA	NA	NA
GSE64854	GSE64854_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE71284	GSE71284_control_WT2_WT3_C1_C2_vs_truncation_3kb1_3kb2_100kb1_100kb2_CUFFDIFF_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE59290	GSE59290_ANTI_isoform_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE54246	GSE54246_Control_vs._4_NQO_Tongue_gene_exp.xlsx.gz		bimodal	NA	NA	NA	NA
GSE52367	GSE52367_Cuflinks_2338_2339.txt.gz		conservative	NA	NA	NA	NA
GSE51847	GSE51847_Expression_table_LE-2_x_HR-3.txt.gz		conservative	NA	NA	NA	NA
GSE92989	GSE92989_Drought_3_days.txt.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Gene_Rv_24v36.txt.gz		conservative	NA	NA	NA	NA
GSE93870	GSE93870_processed_file.xlsx-sheet-293FT_ZIKV.Vs.293FT_Control.DES		spiky	NA		anti-conservative	0.88
GSE93870	GSE93870_processed_file.xlsx-sheet-BJ_ZIKV.Vs.BJ_Control.DESeq_Ana		spiky	NA		anti-conservative	0.96
GSE93870	GSE93870_processed_file.xlsx-sheet-CHME_ZIKV.Vs.CHME_Control.DESeq		spiky	NA		anti-conservative	0.81
GSE93870	GSE93870_processed_file.xlsx-sheet-THP1_ZIKV.Vs.THP1_Control.DESeq		spiky	NA		anti-conservative	0.48
GSE93870	GSE93870_processed_file.xlsx-sheet-ZIKV.Vs.Control.DESeq_Analysis_		spiky	NA		spiky	NA
GSE80597	GSE80597_Processed_data_cuffdiff_output.txt.gz		conservative	NA	NA	NA	NA
GSE61336	GSE61336_results_167_vs_WTZ.txt.gz		bimodal	NA		anti-conservative	0.41
GSE83406	GSE83406_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE78878	GSE78878_N2CvsN2P_score.txt.gz		spiky	NA	NA	NA	NA
GSE80301	GSE80301_col_rep1_mom1_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE79286	GSE79286_CYC2vsWT_Conj-3.5hr_RNA-Seq.xlsx-sheet-gene_exp		bimodal	NA	NA	NA	NA
GSE64854	GSE64854_isoform_exp.diff.gz		conservative	NA	NA	NA	NA
GSE61033	GSE61033_DE_exonWT_vs_exonKOnoRN.txt.gz		bimodal	NA		anti-conservative	0.71
GSE64455	GSE64455_cuffdiff_out.txt.gz		conservative	NA	NA	NA	NA
GSE66232	GSE66232_B-ALL_Cuffdiff_Trim33.1271_rep1.txt.gz		conservative	NA	NA	NA	NA
GSE59290	GSE59290_MIR_isoform_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE57680	GSE57680_RPKM_luminal_epithelium.txt.gz		conservative	NA	NA	NA	NA
GSE32038	GSE32038_tss_group_exp.diff.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Gene_Rv_24v48.txt.gz		conservative	NA	NA	NA	NA
GSE93206	GSE93206_Processed_data_files.xlsx-set-0		conservative	NA	NA	NA	NA
GSE93206	GSE93206_Processed_data_files.xlsx-set-1		spiky	NA	NA	NA	NA
GSE77037	GSE77037_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE61336	GSE61336_results_WTL_vs_WTZ.txt.gz		conservative	NA		anti-conservative	0.99
GSE76533	GSE76533_leaf.gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE83555	GSE83555_WT-KO-mm9-gene_exp.txt.gz		conservative	NA	NA	NA	NA
GSE80301	GSE80301_col_rep1_nrpe1_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE79286	GSE79286_CYC2vsWT_Conj-3hr_RNA-Seq.xlsx		bimodal	NA	NA	NA	NA
GSE64854	GSE64854_promoters.diff.gz		conservative	NA	NA	NA	NA
GSE61033	GSE61033_DE_intronWT_vs_intronKOnoRN.txt.gz		bimodal	NA		anti-conservative	0.86
GSE57254	GSE57254_Control_CELF1KD_abundances.txt.gz		conservative	NA	NA	NA	NA
GSE66232	GSE66232_B-ALL_Cuffdiff_Trim33.1271_rep2.txt.gz		conservative	NA	NA	NA	NA
GSE52201	GSE52201_RNAseq_processed_data_L_D_siLSD1.txt.gz		conservative	NA	NA	NA	NA
GSE57680	GSE57680_RPKM_stroma.txt.gz		conservative	NA	NA	NA	NA
GSE58360	GSE58360_Cebpa.txt.gz		conservative	NA	NA	NA	NA
GSE50424	GSE50424_Adipose.tsv.gz		conservative	NA	NA	NA	NA
GSE52038	GSE52038_Supplementary-table-1-date11021.txt.gz		bimodal	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Gene_Rv_36v48.txt.gz		conservative	NA	NA	NA	NA
GSE76533	GSE76533_seedling.gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE80301	GSE80301_col_rep1_pial1pial2_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE64854	GSE64854_splicing.diff.gz		conservative	NA	NA	NA	NA
GSE70544	GSE70544_Normoxia_vs_Hypoxia_Gencode_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE58359	GSE58359_HOXA9.txt.gz		bimodal	NA	NA	NA	NA
GSE50424	GSE50424_Liver.tsv.gz		conservative	NA	NA	NA	NA
GSE42381	GSE42381_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Gene_Sb_24v36.txt.gz		conservative	NA	NA	NA	NA
GSE80301	GSE80301_col_rep2_mom1_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE64854	GSE64854_tss_group_exp.diff.gz		conservative	NA	NA	NA	NA
GSE70544	GSE70544_Normoxia_vs_Hypoxia_Rinn_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE58379	GSE58379_RBM47_alternative_splicing.txt.gz		bimodal	NA	NA	NA	NA
GSE54982	GSE54982_Differential_Gene_Expression_Summary.xlsx.gz-sheet-C1_WtE8.0_Vs_Wt10.0		bimodal	NA	NA	NA	NA
GSE54982	GSE54982_Differential_Gene_Expression_Summary.xlsx.gz-sheet-C2_Wt_VS_ Tc E8.0		bimodal	NA	NA	NA	NA
GSE54982	GSE54982_Differential_Gene_Expression_Summary.xlsx.gz-sheet-C3_Wt_VS_Tc_E10.0		bimodal	NA	NA	NA	NA
GSE54982	GSE54982_Differential_Gene_Expression_Summary.xlsx.gz-sheet-C4_TcE8.0_VS_TcE10.0		bimodal	NA	NA	NA	NA
GSE37111	GSE37111_clip.txt.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Gene_Sb_24v48.txt.gz		conservative	NA	NA	NA	NA
GSE90615	GSE90615_DifferentialExpression.xlsx-sheet-Sfrp2_12dP-MI_v Vehicle_12dP-MI		other	NA	NA	NA	NA
GSE90615	GSE90615_DifferentialExpression.xlsx-sheet-1dP-MI_vs_Vehicle_12dP-MI		uniform	NA	NA	NA	NA
GSE90615	GSE90615_DifferentialExpression.xlsx-sheet-1dP-MI_vs_Sfrp2_12dP-MI		uniform	NA	NA	NA	NA
GSE80301	GSE80301_col_rep2_mom1pial2_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE71943	GSE71943_KO_vs_WT_diffGenes.txt.gz		bimodal	NA	NA	NA	NA
GSE70544	GSE70544_Vehicle_vs_Cytokine_Gencode_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE66716	GSE66716_Lim_et_al_14-3-3zKOWAT_Processed_data_Cuffdiff.xlsx		conservative	NA	NA	NA	NA
GSE67674	GSE67674_RNA-seq_analysis_AADMSOvsAAGSK-J4.txt.gz		bimodal	NA	NA	NA	NA
GSE54984	GSE54984_Differential_Gene_Expression_Summary.xlsx.gz-sheet-ESCs_VS_EBDay4		bimodal	NA	NA	NA	NA
GSE54984	GSE54984_Differential_Gene_Expression_Summary.xlsx.gz-sheet-EBDay4_ControlVSBrachyuryKD		bimodal	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Gene_Sb_36v48.txt.gz		conservative	NA	NA	NA	NA
GSE80301	GSE80301_col_rep2_pial2_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE71281	GSE71281_G53_veh_vs_SAA_Th17_CuffDiff_Gene_Differential.txt.gz		conservative	NA	NA	NA	NA
GSE70544	GSE70544_Vehicle_vs_Cytokine_Rinn_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE67554	GSE67554_TAG5_Cuffdiff_gene_differential_expression_testing.txt.gz		bimodal	NA	NA	NA	NA
GSE98541	GSE98541_RPE1_diff_expression_WT_SAFA.xlsx		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Gene_SbvSv_24.txt.gz		conservative	NA	NA	NA	NA
GSE76232	GSE76232_isoforms.diff_exp_ann_result.xls.gz		conservative	NA	NA	NA	NA
GSE67554	GSE67554_ZG14_Cuffdiff_gene_differential_expression_testing.txt.gz		bimodal	NA	NA	NA	NA
GSE61851	GSE61851_genelist-sortedbypadj.txt.gz		bimodal	NA	NA	NA	NA
GSE44665	GSE44665_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Gene_SbvSv_36.txt.gz		conservative	NA	NA	NA	NA
GSE81100	GSE81100_youngARSER_output.txt.gz		bimodal	NA	NA	NA	NA
GSE76151	GSE76151_A1_isoform_exp.diff.gz		conservative	NA	NA	NA	NA
GSE72917	GSE72917_DP1_WTvKO.txt.gz		conservative	NA	NA	NA	NA
GSE70860	GSE70860_DEaxons.csv.gz		spiky	NA		anti-conservative	0.21
GSE68102	GSE68102_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE63570	GSE63570_Rec_siRNA_RNA-seq.txt.gz		conservative	NA	NA	NA	NA
GSE65542	GSE65542_pnky_kd.diff.gz		bimodal	NA	NA	NA	NA
GSE40948	GSE40948_MEF_vs_ESC_2replicates_expression.tsv.gz		bimodal	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Gene_SbvSv_48.txt.gz		conservative	NA	NA	NA	NA
GSE81123	GSE81123_Poplar_RNAseq_data.ods.txt.gz		conservative	NA	NA	NA	NA
GSE71988	GSE71988_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE76151	GSE76151_A2B1A1_isoform_exp.diff.gz		conservative	NA	NA	NA	NA
GSE71609	GSE71609_2015_MZT.txt.gz-set-0		bimodal	NA	NA	NA	NA
GSE71609	GSE71609_2015_MZT.txt.gz-set-1		conservative	NA	NA	NA	NA
GSE71609	GSE71609_2015_MZT.txt.gz-set-2		conservative	NA	NA	NA	NA
GSE71609	GSE71609_2015_MZT.txt.gz-set-3		bimodal	NA	NA	NA	NA
GSE71609	GSE71609_2015_MZT.txt.gz-set-4		bimodal	NA	NA	NA	NA
GSE69311	GSE69311_deseq_diff_genes.csv.gz		bimodal	NA		anti-conservative	0.79
GSE72917	GSE72917_DP2_WTvKO.txt.gz		conservative	NA	NA	NA	NA
GSE70860	GSE70860_DEsoma.csv.gz		other	NA		other	NA
GSE65542	GSE65542_ptbp1_kd.diff.gz		bimodal	NA	NA	NA	NA
GSE58910	GSE58910_SenescentAstrocytesDEanalysis_v2.csv.gz		bimodal	NA		anti-conservative	0.69
GSE44668	GSE44668_gene_exp_diff.txt.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Gene_SbvSv_Global.txt.gz		conservative	NA	NA	NA	NA
GSE76151	GSE76151_A2B1_isoform_exp.diff.gz		conservative	NA	NA	NA	NA
GSE65142	GSE65142_HYBP.txt.gz		bimodal	NA	NA	NA	NA
GSE76190	GSE76190_OtA8535_vs_OtA8538_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE63838	GSE63838_cds_exp_diff_2D.txt.gz		conservative	NA	NA	NA	NA
GSE72917	GSE72917_KO_DP1vDP2.txt.gz		conservative	NA	NA	NA	NA
GSE52153	GSE52153_wtDMSOvsczt-1DMSO.txt.gz		bimodal	NA	NA	NA	NA
GSE40228	GSE40228_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Gene_Sv_24v36.txt.gz		conservative	NA	NA	NA	NA
GSE93021	GSE93021_DSP-TP_LL-YY_FPKM.xlsx-sheet-DSP-TP_VS_LL-YY		conservative	NA	NA	NA	NA
GSE93021	GSE93021_DSP-TP_LL-YY_FPKM.xlsx-sheet-DSP-TP		conservative	NA	NA	NA	NA
GSE93021	GSE93021_DSP-TP_LL-YY_FPKM.xlsx-sheet-LL-YY		conservative	NA	NA	NA	NA
GSE79680	GSE79680_Heat_shock_table.csv.gz		conservative	NA	NA	NA	NA
GSE76190	GSE76190_OtA8536_vs_OtA8539_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE72917	GSE72917_WT_DP1vDP2.txt.gz		conservative	NA	NA	NA	NA
GSE69175	GSE69175_gene_exp.txt.gz		conservative	NA	NA	NA	NA
GSE60822	GSE60822_cuffdiff.control.ablation.tab.gz		conservative	NA	NA	NA	NA
GSE53789	GSE53789_GFP_FACS_x_GFP_LCM-not_significant.diff.txt.gz		conservative	NA	NA	NA	NA
GSE51144	GSE51144_all_exons.txt.gz		other	NA	NA	NA	NA
GSE98387	GSE98387_gene_exp.txt.gz		other	NA		other	NA
GSE90974	GSE90974_Cuffdiff_Gene_Sv_24v48.txt.gz		conservative	NA	NA	NA	NA
GSE52911	GSE52911_gene_exp.txt.gz		conservative	NA	NA	NA	NA
GSE76683	GSE76683_shHOXA7gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE79779	GSE79779_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE65142	GSE65142_YH.txt.gz		bimodal	NA	NA	NA	NA
GSE76190	GSE76190_OtA8537_vs_OtA8540_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE60822	GSE60822_cuffdiff.control.induction.tab.gz		conservative	NA	NA	NA	NA
GSE53789	GSE53789_GFP_FACS_x_WT_FACS-not_significant.diff.txt.gz		conservative	NA	NA	NA	NA
GSE41487	GSE41487_ResultsContr123vsRas123Multiple.xls.gz-sheet-RawData Contr123 vs Ras123		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Gene_Sv_36v48.txt.gz		conservative	NA	NA	NA	NA
GSE80237	GSE80237_Supplementary_Data_1.txt.gz		bimodal	NA	NA	NA	NA
GSE76682	GSE76682_EB_AM580gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE75878	GSE75878_cds.diff.gz		bimodal	NA	NA	NA	NA
GSE65987	GSE65987_FPKM_for_MEFs.txt.gz		conservative	NA	NA	NA	NA
GSE76190	GSE76190_OtA8538_vs_OtA8541_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE60822	GSE60822_cuffdiff.induction.ablation.tab.gz		conservative	NA	NA	NA	NA
GSE53789	GSE53789_GFP_LCM_gt_GFP_FACS_gene_exp_with_zeros.diff.txt.gz		other	NA	NA	NA	NA
GSE50203	GSE50203_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE41487	GSE41487_ResultsContr123vsRas12Multiple.xls.gz-sheet-RawData Contr123 vs Ras12		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Gene_SvvRv_24.txt.gz		conservative	NA	NA	NA	NA
GSE86323	GSE86323_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE85308	GSE85308_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE75878	GSE75878_cds_exp.diff.gz		conservative	NA	NA	NA	NA
GSE76190	GSE76190_OtA8539_vs_OtA8542_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE71164	GSE71164_SCR-static_vs_SCR-FSS.tabular.txt.gz		bimodal	NA	NA	NA	NA
GSE53789	GSE53789_GFP_LCM_gt_WT_FACS_gene_exp_with_zeros.diff.txt.gz		other	NA	NA	NA	NA
GSE50203	GSE50203_isoform_exp.diff.gz		conservative	NA	NA	NA	NA
GSE56575	GSE56575_cds_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE41090	GSE41090_WT_vs_KO_full_genes.tab.txt.gz		conservative	NA	NA	NA	NA
GSE39812	GSE39812_FT_result_transcript_summary.tsv.txt.gz		conservative	NA	NA	NA	NA
GSE94967	GSE94967_cds_exp.diff_A_B_CDS.diff.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Gene_SvvRv_36.txt.gz		conservative	NA	NA	NA	NA
GSE69205	GSE69205_gene_exp.txt.gz		conservative	NA	NA	NA	NA
GSE72820	GSE72820_MDA1N-1P_RPKM.xlsx.gz		conservative	NA	NA	NA	NA
GSE85308	GSE85308_processed_data.txt.gz		conservative	NA	NA	NA	NA
GSE75878	GSE75878_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE76190	GSE76190_OtA8540_vs_OtA8543_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE71164	GSE71164_SCR-static_vs_SH-EZH2-static.tabular.txt.gz		conservative	NA	NA	NA	NA
GSE53789	GSE53789_GFP_LCM_x_GFP_FACS-not_significant.diff.txt.gz		conservative	NA	NA	NA	NA
GSE56097	GSE56097_Cufflinks_CuffDiff_gene_exp.txt.gz		conservative	NA	NA	NA	NA
GSE49097	GSE49097_BetweenGenotypes_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE84158	GSE84158_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE94967	GSE94967_gene_exp.diff_A_B_GENE.diff.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Gene_SvvRv_48.txt.gz		conservative	NA	NA	NA	NA
GSE62040	GSE62040_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE72820	GSE72820_MDA27N-27P_RPKM.xlsx.gz		conservative	NA	NA	NA	NA
GSE75878	GSE75878_isoform_exp.diff.gz		conservative	NA	NA	NA	NA
GSE70068	GSE70068_GM_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE72560	GSE72560_Enteric_Glia.txt.gz		conservative	NA	NA	NA	NA
GSE53789	GSE53789_GFP_LCM_x_WT_FACS-not_significant.diff.txt.gz		conservative	NA	NA	NA	NA
GSE49097	GSE49097_CompareAll_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE39812	GSE39812_TB_result_transcript_summary.tsv.txt.gz		bimodal	NA	NA	NA	NA
GSE94967	GSE94967_isoform_exp.diff_A_B_ISOFORM.diff.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Gene_SvvRv_Global.txt.gz		conservative	NA	NA	NA	NA
GSE77395	GSE77395_A_OE_air_vs_Col_air.diff.gz		conservative	NA	NA	NA	NA
GSE72820	GSE72820_MDA2N-2P_RPKM.xlsx.gz		conservative	NA	NA	NA	NA
GSE70815	GSE70815_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE76992	GSE76992_GFP_vs_p16.txt.gz		bimodal	NA	NA	NA	NA
GSE74868	GSE74868_ETS2_T72D_OE_Epi_RNAseq.txt.gz		conservative	NA	NA	NA	NA
GSE60701	GSE60701_AL_R_vs_AL_L.diff_expressed_transcripts.tsv.gz		bimodal	NA	NA	NA	NA
GSE49097	GSE49097_Within_A_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE94967	GSE94967_tss_group_exp.diff_A_B_TSS.diff.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Transcript_Rb_24v36.txt.gz		conservative	NA	NA	NA	NA
GSE77395	GSE77395_col_air_vs_ethylene.diff.gz		bimodal	NA	NA	NA	NA
GSE72820	GSE72820_MDA31N-31P_RPKM.xlsx.gz		conservative	NA	NA	NA	NA
GSE75833	GSE75833_DESeq-processed_FB.control_vs_FB.25mkM.4HT.txt.gz		conservative	NA	NA	NA	NA
GSE77256	GSE77256_Cuffdiff_Anagen_HFSCs.txt.gz		bimodal	NA	NA	NA	NA
GSE70068	GSE70068_TNF_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE60701	GSE60701_ChL_R_vs_AL_R.diff_expressed_transcripts.tsv.gz		bimodal	NA	NA	NA	NA
GSE49097	GSE49097_Within_B_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE39605	GSE39605_All_KOvsWT_filtered_final.xlsx.gz-sheet-All_KOvsWT_filtered		conservative	NA		other	NA
GSE39652	GSE39652_20111201c2Day3_gene_exp.txt.gz		bimodal	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Transcript_Rb_24v48.txt.gz		conservative	NA	NA	NA	NA
GSE87808	GSE87808_diffExp_Slc7a5_Cerebellum_allGenes.txt.gz		spiky	NA		anti-conservative	0.83
GSE79412	GSE79412_amiFPSa_gene_exp_diff.xlsx-sheet-Hoja1		conservative	NA	NA	NA	NA
GSE73192	GSE73192_cds_chromosome_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE72820	GSE72820_MDA33N-33P_RPKM.xlsx.gz		conservative	NA	NA	NA	NA
GSE84786	GSE84786_isoform_exp.xlsx-sheet-isoform_exp		conservative	NA	NA	NA	NA
GSE84786	GSE84786_isoform_exp.xlsx-sheet-Fold change		conservative	NA	NA	NA	NA
GSE75878	GSE75878_tss_group_exp.diff.gz		conservative	NA	NA	NA	NA
GSE77256	GSE77256_Cuffdiff_Telogen_HFSCs.txt.gz		conservative	NA	NA	NA	NA
GSE70108	GSE70108_G263_CuffDiff_WTvsDDX5Tko.tabular.txt.gz		conservative	NA	NA	NA	NA
GSE62909	GSE62909_Differential_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE72178	GSE72178_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE53789	GSE53789_WT_FACS_x_GFP_FACS-not_significant.diff.txt.gz		conservative	NA	NA	NA	NA
GSE61031	GSE61031_DE_polyaWT_vs_polyaKO.txt.gz		bimodal	NA		anti-conservative	0.84
GSE60701	GSE60701_ChL_R_vs_ChL_L.diff_expressed_transcripts.tsv.gz		bimodal	NA	NA	NA	NA
GSE49097	GSE49097_Within_WT_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE57517	GSE57517_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE56058	GSE56058_differentialExpressionGenes_RD19.txt.gz		other	NA	NA	NA	NA
GSE39652	GSE39652_20111201c2LZ_gene_exp.txt.gz		conservative	NA	NA	NA	NA
GSE83217	GSE83217_Processed_Matrix_FPKM.xlsx-sheet-siScramble_vs_siHdac4		conservative	NA	NA	NA	NA
GSE83217	GSE83217_Processed_Matrix_FPKM.xlsx-sheet-siScramble_vs_siBdnf		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Transcript_Rb_36v48.txt.gz		conservative	NA	NA	NA	NA
GSE84308	GSE84308_RNA.txt.gz		spiky	NA	NA	NA	NA
GSE76287	GSE76287_rosettes_col0vdko_tair.txt.gz		conservative	NA	NA	NA	NA
GSE72820	GSE72820_MDA34N-34P_RPKM.xlsx.gz		conservative	NA	NA	NA	NA
GSE86077	GSE86077_N2_EVvs28_D4.diff.gz		conservative	NA	NA	NA	NA
GSE77256	GSE77256_Cuffdiff_all_HFSCs.txt.gz		bimodal	NA	NA	NA	NA
GSE72830	GSE72830_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE70108	GSE70108_G340_CuffDiff_WTvsRORgko.tabular.txt.gz		conservative	NA	NA	NA	NA
GSE70068	GSE70068_UT_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE53789	GSE53789_WT_FACS_x_GFP_LCM-not_significant.diff.txt.gz		conservative	NA	NA	NA	NA
GSE39652	GSE39652_20111201c2Pach_gene_exp.txt.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Transcript_RbvRv_24.txt.gz		conservative	NA	NA	NA	NA
GSE76287	GSE76287_seedling_col0vdko_tair.txt.gz		bimodal	NA	NA	NA	NA
GSE72820	GSE72820_MDA3N-3P_RPKM.xlsx.gz		conservative	NA	NA	NA	NA
GSE86077	GSE86077_glp-1_EVvs28_D4.diff.gz		conservative	NA	NA	NA	NA
GSE84798	GSE84798_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE80972	GSE80972_frm_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE70785	GSE70785_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE72830	GSE72830_tss_group_exp.diff.gz		conservative	NA	NA	NA	NA
GSE72787	GSE72787_deseq2_closed_vs_open.tsv.gz		spiky	NA	NA	NA	NA
GSE69855	GSE69855_gene_exp_ResvResVag.txt.gz		conservative	NA	NA	NA	NA
GSE53789	GSE53789_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE52080	GSE52080_processed_data.txt.gz		bimodal	NA	NA	NA	NA
GSE55596	GSE55596_LOLOdiff_nonovel.txt.gz		conservative	NA	NA	NA	NA
GSE39652	GSE39652_20111201c2PreMeiotic_gene_exp.txt.gz		conservative	NA	NA	NA	NA
GSE97525	GSE97525_Dm_AKHR_F2_RNA-seq.xlsx-sheet-PP vs WT		other	NA		other	NA
GSE97525	GSE97525_Dm_AKHR_F2_RNA-seq.xlsx-sheet-PM vs WT		other	NA		other	NA
GSE97525	GSE97525_Dm_AKHR_F2_RNA-seq.xlsx-sheet-PP vs PM		other	NA		other	NA
GSE90974	GSE90974_Cuffdiff_Transcript_RbvRv_36.txt.gz		conservative	NA	NA	NA	NA
GSE83601	GSE83601_All_genes_in_controls_and_PTSD.txt.gz		conservative	NA	NA	NA	NA
GSE84529	GSE84529_Paired_comparison_of_three_sections_Cuffdiff.xlsx-sheet-Comparison_0-5_mm_vs_15-20_mm		bimodal	NA	NA	NA	NA
GSE84529	GSE84529_Paired_comparison_of_three_sections_Cuffdiff.xlsx-sheet-Comparison_0-5_mm_vs_30-35_mm		bimodal	NA	NA	NA	NA
GSE84529	GSE84529_Paired_comparison_of_three_sections_Cuffdiff.xlsx-sheet-Comparison_30-35_mm_vs_15-20_mm		conservative	NA	NA	NA	NA
GSE72947	GSE72947_Dm_sir2_RNA-seq.xlsx-sheet-Analyzed Genes		conservative	NA	NA	NA	NA
GSE64747	GSE64747_deseq_comp_DMSO_minus_TEX_vs_compound59_minus_TEX_with_annot_and_counts.txt.gz		conservative	NA	NA	NA	NA
GSE72321	GSE72321_annotated_diffana_6-OHDA-6-OHDA_En.xlsx		conservative	NA		other	NA
GSE69855	GSE69855_gene_exp_ResvSham.txt.gz		conservative	NA	NA	NA	NA
GSE55596	GSE55596_alldiff_nonovel.txt.gz		conservative	NA	NA	NA	NA
GSE85627	GSE85627_mDUX-mESC.xlsx.gz-sheet-Transient		spiky	NA		other	NA
GSE90974	GSE90974_Cuffdiff_Transcript_RbvRv_48.txt.gz		conservative	NA	NA	NA	NA
GSE81191	GSE81191_Cuffdiff_Isoform.txt.gz		conservative	NA	NA	NA	NA
GSE86521	GSE86521_DESeq_out_KO_vs_WT.txt.gz		bimodal	NA		anti-conservative	0.74
GSE72321	GSE72321_annotated_diffana_gain-of-function_En1-ipsi-contra.xlsx		conservative	NA		spiky	NA
GSE71153	GSE71153_projectLindholmPerry_USDA0001AL_master_list.txt.gz		spiky	NA	NA	NA	NA
GSE69900	GSE69900_control-CBD16H.txt.gz		bimodal	NA	NA	NA	NA
GSE51119	GSE51119_IBH1KD_vs_Col_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Transcript_RbvRv_Global.txt.gz		conservative	NA	NA	NA	NA
GSE81191	GSE81191_Cuffdiff_transcript.txt.gz		conservative	NA	NA	NA	NA
GSE76487	GSE76487_shMBNL1_gene_exp_diff.txt.gz		bimodal	NA	NA	NA	NA
GSE72321	GSE72321_annotated_diffana_loss-of-function_En1LacZ-WT.xlsx		conservative	NA		spiky	NA
GSE69900	GSE69900_control-tamoxifen48H.txt.gz		bimodal	NA	NA	NA	NA
GSE62633	GSE62633_Differential_expression_table.txt.gz		conservative	NA	NA	NA	NA
GSE46046	GSE46046_GenesTable.txt.gz		spiky	NA		anti-conservative	0.93
GSE51119	GSE51119_IBH1ox_vs_Col_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE40218	GSE40218_processed_DESeq.txt.gz		bimodal	NA		anti-conservative	0.89
GSE90974	GSE90974_Cuffdiff_Transcript_Rv_24v36.txt.gz		conservative	NA	NA	NA	NA
GSE87532	GSE87532_gene_exp.diff.name.txt.gz		bimodal	NA	NA	NA	NA
GSE84370	GSE84370_APC_0h_vs_1h_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE86248	GSE86248_shControl-vs-shPaf1-gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE60691	GSE60691_processed_data_aso_wild_type.txt.gz		bimodal	NA	NA	NA	NA
GSE72341	GSE72341_DEseq_results.xlsx		bimodal	NA		spiky	NA
GSE62760	GSE62760_Acute_Cuffdiff_DGE.txt.gz		bimodal	NA	NA	NA	NA
GSE59781	GSE59781_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE61566	GSE61566_cds.diff.gz		conservative	NA	NA	NA	NA
GSE51119	GSE51119_bHLH159KD_vs_Col_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE36866	GSE36866_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE97258	GSE97258_differential_expression.xls.gz-sheet-Sheet1		bimodal	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Transcript_Rv_24v48.txt.gz		conservative	NA	NA	NA	NA
GSE84370	GSE84370_APC_0h_vs_2h_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE76396	GSE76396_isoform_exp.diff.gz		conservative	NA	NA	NA	NA
GSE86248	GSE86248_shControl-vs-shPhf5a-gene_exp_1_.diff.gz		bimodal	NA	NA	NA	NA
GSE69556	GSE69556_cds_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE60691	GSE60691_processed_data_krkr_sumo_mut.txt.gz		bimodal	NA	NA	NA	NA
GSE62760	GSE62760_Chronic_Cuffdiff_DGE.txt.gz		bimodal	NA	NA	NA	NA
GSE51119	GSE51119_bHLH159ox_vs_Col_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE49581	GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-0		bimodal	NA	NA	NA	NA
GSE49581	GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-1		bimodal	NA	NA	NA	NA
GSE49581	GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-2		bimodal	NA	NA	NA	NA
GSE49581	GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-3		bimodal	NA	NA	NA	NA
GSE49581	GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-4		conservative	NA	NA	NA	NA
GSE49581	GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-5		bimodal	NA	NA	NA	NA
GSE49581	GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-6		bimodal	NA	NA	NA	NA
GSE49581	GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-7		bimodal	NA	NA	NA	NA
GSE49581	GSE49581_lincBrn1b_All_timepoints_cuffdiff.tab.gz-set-8		bimodal	NA	NA	NA	NA
GSE49587	GSE49587_L2_L3P1_2_DEUtable.txt.gz		other	NA	NA	NA	NA
GSE98650	GSE98650_mb1_hdac3_cuffdiff_out.txt.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Transcript_Rv_36v48.txt.gz		conservative	NA	NA	NA	NA
GSE93866	GSE93866_IDOE_GENE_EXPRESSION.xlsx		conservative	NA	NA	NA	NA
GSE70699	GSE70699_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE68460	GSE68460_WSVSBS_gene_diff.xls.gz-sheet-Sheet1		conservative	NA	NA	NA	NA
GSE56122	GSE56122_IFN-gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE63884	GSE63884_gene_exp.diff_cenpk_imx372_aerobic.txt.gz		uniform	NA	NA	NA	NA
GSE61566	GSE61566_cds_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE46502	GSE46502_diff_gene_exp_PR_all.xlsx.gz-sheet-gene_exp.diff		conservative	NA	NA	NA	NA
GSE49587	GSE49587_L312hr_L3P1_2_DEUtable.txt.gz		other	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Transcript_Sb_24v36.txt.gz		conservative	NA	NA	NA	NA
GSE95006	GSE95006_RNA-seq_Summary.xls.gz-sheet-Trip_delta_vs_J-set-0		other	NA	NA	NA	NA
GSE95006	GSE95006_RNA-seq_Summary.xls.gz-sheet-Trip_delta_vs_J-set-1		other	NA	NA	NA	NA
GSE72712	GSE72712_ESCd_40-70_over_ESCd_lt40.cuffdiff.xlsx-sheet-EST-d_40-70_over_EST-d_lt40		conservative	NA	NA	NA	NA
GSE65337	GSE65337_Nfix_KO_vs_WT_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE68460	GSE68460_gene_exp.xls.gz-sheet-Sheet1		conservative	NA	NA	NA	NA
GSE65039	GSE65039_gene_exp1.txt.gz		conservative	NA	NA	NA	NA
GSE63226	GSE63226_WRR+vsWRR-.xls.gz		conservative	NA	NA	NA	NA
GSE61566	GSE61566_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE50156	GSE50156_WT_36oC_15min_AND_WT_24oC.txt.gz		conservative	NA	NA	NA	NA
GSE47062	GSE47062_KO_vs_WT.txt.gz		conservative	NA	NA	NA	NA
GSE90974	GSE90974_Cuffdiff_Transcript_Sb_24v48.txt.gz		conservative	NA	NA	NA	NA
GSE72712	GSE72712_ESCd_40-70_over_ESCu.cuffdiff.xlsx-sheet-EST-d_40-70_over_EST-u.cuffdiff		conservative	NA	NA	NA	NA
GSE77304	GSE77304_gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE78506	GSE78506_dmso_vs_ca_24Hour_geneExp.diff.gz		bimodal	NA	NA	NA	NA
GSE66547	GSE66547_20150828-oocyteMut_vs_oocyteWt-deResults.xlsx-sheet-Genes		conservative	NA	NA	NA	NA
GSE56122	GSE56122_LPS-gene_exp.diff.gz		conservative	NA	NA	NA	NA
GSE50156	GSE50156_mas5D_AND_WT_24oC.txt.gz		conservative	NA	NA	NA	NA
GSE37703	GSE37703_hiseq_cuffdiff_cds_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE37703	GSE37703_hiseq_cuffdiff_cds.diff.gz		bimodal	NA	NA	NA	NA
GSE37703	GSE37703_hiseq_cuffdiff_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE37703	GSE37703_hiseq_cuffdiff_isoform_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE37703	GSE37703_hiseq_cuffdiff_promoters.diff.gz		bimodal	NA	NA	NA	NA
GSE37703	GSE37703_hiseq_cuffdiff_splicing.diff.gz		bimodal	NA	NA	NA	NA
GSE37703	GSE37703_hiseq_cuffdiff_tss_group_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE37703	GSE37703_miseq_cuffdiff_cds_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE37703	GSE37703_miseq_cuffdiff_cds.diff.gz		bimodal	NA	NA	NA	NA
GSE37703	GSE37703_miseq_cuffdiff_gene_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE37703	GSE37703_miseq_cuffdiff_isoform_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE37703	GSE37703_miseq_cuffdiff_promoters.diff.gz		bimodal	NA	NA	NA	NA
GSE37703	GSE37703_miseq_cuffdiff_splicing.diff.gz		conservative	NA	NA	NA	NA
GSE37703	GSE37703_miseq_cuffdiff_tss_group_exp.diff.gz		bimodal	NA	NA	NA	NA
GSE40187	GSE40187_gene_exp_diff_Control_NXD30001_fromtophat120_cufflinks102_c0_081612.txt.gz		conservative	NA	NA	NA	NA
GSE40187	GSE40187_gene_exp_diff_MG1_MG2_fromtophat120_cufflinks102_c0_081612.txt.gz		conservative	NA	NA	NA	NA
GSE44233	GSE44233_processed_data.txt.gz		spiky	NA		anti-conservative	0.72
GSE50198	GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-0		bimodal	NA		anti-conservative	0.66
GSE58052	GSE58052_N.winogradskyi_co-culture_over_single-culture.txt.gz		spiky	NA	NA	NA	NA
GSE59705	GSE59705_DEXseqresultstable.txt.gz		other	NA	NA	NA	NA
GSE63161	GSE63161_diff-Gene-list.txt.gz		spiky	NA	NA	NA	NA
GSE66767	GSE66767_CD34_cord_blood.EET.txt.gz		spiky	NA	NA	NA	NA
GSE66767	GSE66767_U937.EET.txt.gz		spiky	NA	NA	NA	NA
GSE67654	GSE67654_RNA-seq.xlsx.gz-sheet-Sheet1-set-0		other	NA	NA	NA	NA
GSE67654	GSE67654_RNA-seq.xlsx.gz-sheet-Sheet1-set-1		other	NA	NA	NA	NA
GSE68176	GSE68176_Camfl1.gene_exp.diff.gz		spiky	NA	NA	NA	NA
GSE72860	GSE72860_RNA-seq_log2fdc.txt.gz		spiky	NA		anti-conservative	0.64
GSE72860	GSE72860_RRBS_CpG_methylation_call.txt.gz		bimodal	NA	NA	NA	NA
GSE78711	GSE78711_gene.exp.all.txt.gz		spiky	NA	NA	NA	NA
GSE84875	GSE84875_human_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE84875	GSE84875_mouse_gene_exp.diff.txt.gz		conservative	NA	NA	NA	NA
GSE86239	GSE86239_ETS2shRNA_gene_exp.diff.gz		spiky	NA	NA	NA	NA
GSE91001	GSE91001_Galaxy255-AveragedPerCRNAseqData.tabular.txt.gz		spiky	NA	NA	NA	NA
GSE91001	GSE91001_PerC_RNAseq_averageddata.xls.gz-sheet-diffexp_rerun		spiky	NA	NA	NA	NA
GSE83736	GSE83736_DESeq2.Vav.KO.C_vs_Vav.WT.C.txt.gz		anti-conservative	0.52		anti-conservative	0.30
GSE63707	GSE63707_DEXSeqResults_AretIR_03d_vs_IFMWT_03d.txt.gz		anti-conservative	0.67	NA	NA	NA
GSE51645	GSE51645_DE_processed_data.txt.gz		anti-conservative	0.76	NA	NA	NA
GSE97406	GSE97406_CRP_K100Q_vs_CRP_Control.csv.gz-set-0		anti-conservative	0.01	NA	NA	NA
GSE97406	GSE97406_CRP_K100Q_vs_CRP_Control.csv.gz-set-1		anti-conservative	0.02	NA	NA	NA
GSE83736	GSE83736_DESeq2.Vav.WTvsKO.StimulatedInteractions.txt.gz		anti-conservative	0.56		anti-conservative	0.32
GSE63707	GSE63707_DEXSeqResults_AretIR_03d_vs_salm_ko.txt.gz		anti-conservative	0.59	NA	NA	NA
GSE67834	GSE67834_DESeq2_genes_diffexp_by_fc_mTECs_vs_sp-DCs.csv.gz		anti-conservative	0.29		anti-conservative	0.13
GSE70290	GSE70290_PV_Transcripts.txt.gz		anti-conservative	0.01	NA	NA	NA
GSE63707	GSE63707_DEXSeqResults_AretIR_30h_vs_IFMWT_30h.txt.gz		anti-conservative	0.69	NA	NA	NA
GSE67834	GSE67834_DESeq2_genes_diffexp_by_fc_mTECs_vs_t-DCs.csv.gz		anti-conservative	0.27		anti-conservative	0.11
GSE87365	GSE87365_gene_exp_diff_fc_yes_reg_Fetal_stem_cells_and_FACS_sort_vs_Fetal_stem_cells.xls.gz		anti-conservative	0.00	NA	NA	NA
GSE81237	GSE81237_DE_RNAseqseq_analysis_DESeq_TTP-AAvsGFP.csv.gz		anti-conservative	0.66		anti-conservative	0.59
GSE67360	GSE67360_differentially_expressed_transcripts.txt.gz		anti-conservative	0.00	NA	NA	NA
GSE63707	GSE63707_DEXSeqResults_AretIR_72h_vs_IFMWT_72h.txt.gz		anti-conservative	0.67	NA	NA	NA
GSE97406	GSE97406_CRP_K100R_vs_CRP_Control.csv.gz-set-0		anti-conservative	0.01	NA	NA	NA
GSE97406	GSE97406_CRP_K100R_vs_CRP_Control.csv.gz-set-1		anti-conservative	0.02	NA	NA	NA
GSE67834	GSE67834_DESeq2_genes_diffexp_by_fc_sp-DCs_vs_mTECs.csv.gz		anti-conservative	0.29		anti-conservative	0.13
GSE81237	GSE81237_DE_RNAseqseq_analysis_DESeq_TTP-AAvsTTP.csv.gz		anti-conservative	0.56		anti-conservative	0.48
GSE77077	GSE77077_HT_data_36hpf.xls.gz		anti-conservative	0.43	NA	NA	NA
GSE59335	GSE59335_exons_sig_anno_total.txt.gz		anti-conservative	0.00	NA	NA	NA
GSE33736	GSE33736_HAmCqG0_G8expression.txt.gz		anti-conservative	0.60	NA	NA	NA
GSE67834	GSE67834_DESeq2_genes_diffexp_by_fc_sp-DCs_vs_t-DCs.csv.gz		anti-conservative	0.52		anti-conservative	0.22
GSE87706	GSE87706_SM_vs_RODI.txt.gz		anti-conservative	0.27		anti-conservative	0.13
GSE87365	GSE87365_gene_exp_diff_fc_yes_reg_Fetal_stem_cells_vs_Fetal_myotubes.xls.gz		anti-conservative	0.00	NA	NA	NA
GSE81237	GSE81237_DE_RNAseqseq_analysis_DESeq_TTPvsGFP.csv.gz		anti-conservative	0.75		anti-conservative	0.69
GSE97406	GSE97406_CRP_WT_vs_CRP_Control.csv.gz-set-0		anti-conservative	0.01	NA	NA	NA
GSE97406	GSE97406_CRP_WT_vs_CRP_Control.csv.gz-set-1		anti-conservative	0.02	NA	NA	NA
GSE67834	GSE67834_DESeq2_genes_diffexp_by_fc_t-DCs_vs_mTECs.csv.gz		anti-conservative	0.27		anti-conservative	0.11
GSE87495	GSE87495_results_dds_gencode22.csv.gz		anti-conservative	0.34		anti-conservative	0.15
GSE57397	GSE57397_degexp.KO-REC-REP1-RNA.vs.KO-HS-REP1-RNA.output_score.txt.gz		anti-conservative	0.38	NA	NA	NA
GSE63707	GSE63707_DEXSeqResults_salm_ko_vs_IFMWT_03d.txt.gz		anti-conservative	0.65	NA	NA	NA
GSE67834	GSE67834_DESeq2_genes_diffexp_by_fc_t-DCs_vs_sp-DCs.csv.gz		anti-conservative	0.52		anti-conservative	0.22
GSE57397	GSE57397_degexp.KO-REC-REP2-RNA.vs.KO-HS-REP2-RNA.output_score.txt.gz		anti-conservative	0.39	NA	NA	NA
GSE57397	GSE57397_degexp.WT-REC-REP1-RNA.vs.WT-HS-REP1-RNA.output_score.txt.gz		anti-conservative	0.34	NA	NA	NA
GSE48812	GSE48812_24h_LNCAP_SFN.diff.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE48812	GSE48812_24h_LNCAP_SFN.diff.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE48812	GSE48812_24h_LNCAP_SFN.diff.txt.gz-set-2		anti-conservative	0.00	NA	NA	NA
GSE57397	GSE57397_degexp.WT-REC-REP2-RNA.vs.WT-HS-REP2-RNA.output_score.txt.gz		anti-conservative	0.37	NA	NA	NA
GSE48812	GSE48812_24h_LNCAPvsPC3.diff.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE48812	GSE48812_24h_LNCAPvsPC3.diff.txt.gz-set-1		anti-conservative	0.01	NA	NA	NA
GSE48812	GSE48812_24h_LNCAPvsPC3.diff.txt.gz-set-2		anti-conservative	0.01	NA	NA	NA
GSE48812	GSE48812_24h_PC3_SFN.diff.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE48812	GSE48812_24h_PC3_SFN.diff.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE48812	GSE48812_24h_PC3_SFN.diff.txt.gz-set-2		anti-conservative	0.01	NA	NA	NA
GSE77044	GSE77044_comparison2.xls.gz		anti-conservative	0.69		anti-conservative	0.66
GSE58053	GSE58053_25mm-over-0mm.txt.gz		anti-conservative	0.56	NA	NA	NA
GSE48812	GSE48812_24h_PREC_SFN.diff.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE48812	GSE48812_24h_PREC_SFN.diff.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE48812	GSE48812_24h_PREC_SFN.diff.txt.gz-set-2		anti-conservative	0.01	NA	NA	NA
GSE43650	GSE43650_gene_exp_diff_sig.txt.gz		anti-conservative	0.00	NA	NA	NA
GSE63141	GSE63141_eTMglc_gene_exp.diff.gz		anti-conservative	0.95	NA	NA	NA
GSE58053	GSE58053_25mm-over-1mm.txt.gz		anti-conservative	0.68	NA	NA	NA
GSE48812	GSE48812_24h_PRECvsLNCAP.diff.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE48812	GSE48812_24h_PRECvsLNCAP.diff.txt.gz-set-1		anti-conservative	0.01	NA	NA	NA
GSE48812	GSE48812_24h_PRECvsLNCAP.diff.txt.gz-set-2		anti-conservative	0.01	NA	NA	NA
GSE63141	GSE63141_eTMgly_gene_exp.diff.gz		anti-conservative	0.78	NA	NA	NA
GSE48812	GSE48812_24h_PRECvsPC3.diff.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE48812	GSE48812_24h_PRECvsPC3.diff.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE48812	GSE48812_24h_PRECvsPC3.diff.txt.gz-set-2		anti-conservative	0.01	NA	NA	NA
GSE51037	GSE51037_Untreated_Nitrate_Processed_CunninghamBussel.xlsx.gz		anti-conservative	0.90	NA	NA	NA
GSE79830	GSE79830_Sp2_Wdr70del_vs_Sp1_Wt.Differential_analysis_results.txt.gz		anti-conservative	0.72	NA	NA	NA
GSE56346	GSE56346_wtNplus_vs_wtNminus_DESeq_output.txt.gz		anti-conservative	0.36		anti-conservative	0.23
GSE48812	GSE48812_6h_LNCAP_SFN.diff.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE48812	GSE48812_6h_LNCAP_SFN.diff.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE48812	GSE48812_6h_LNCAP_SFN.diff.txt.gz-set-2		anti-conservative	0.01	NA	NA	NA
GSE50708	GSE50708_DE_result.txt.gz		anti-conservative	0.32	NA	NA	NA
GSE48812	GSE48812_6h_LNCAPvsPC3.diff.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE48812	GSE48812_6h_LNCAPvsPC3.diff.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE48812	GSE48812_6h_LNCAPvsPC3.diff.txt.gz-set-2		anti-conservative	0.01	NA	NA	NA
GSE43143	GSE43143_tooth_FPKM_DE.txt.gz-set-0		anti-conservative	0.65	NA	NA	NA
GSE43143	GSE43143_tooth_FPKM_DE.txt.gz-set-1		anti-conservative	0.99	NA	NA	NA
GSE43143	GSE43143_tooth_FPKM_DE.txt.gz-set-2		anti-conservative	0.82	NA	NA	NA
GSE45788	GSE45788_S72_2_RefII_S72_1_Emf_exp.cuff.gz		anti-conservative	0.83	NA	NA	NA
GSE48812	GSE48812_6h_PC3_SFN.diff.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE48812	GSE48812_6h_PC3_SFN.diff.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE48812	GSE48812_6h_PC3_SFN.diff.txt.gz-set-2		anti-conservative	0.01	NA	NA	NA
GSE99944	GSE99944_Digo_expression_SD-T50nM_SD-Ctrl.csv.gz		anti-conservative	0.48		anti-conservative	0.34
GSE83218	GSE83218_HSC.txt.gz		anti-conservative	0.88		anti-conservative	0.77
GSE48812	GSE48812_6h_PREC_SFN.diff.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE48812	GSE48812_6h_PREC_SFN.diff.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE48812	GSE48812_6h_PREC_SFN.diff.txt.gz-set-2		anti-conservative	0.01	NA	NA	NA
GSE99944	GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.05 UP		anti-conservative	0.00		anti-conservative	0.00
GSE99944	GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.05 DOWN		anti-conservative	0.00		anti-conservative	0.00
GSE99944	GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.05		anti-conservative	0.00		anti-conservative	0.00
GSE99944	GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.10 UP		anti-conservative	0.01		anti-conservative	0.01
GSE99944	GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.10 DOWN		anti-conservative	0.01		anti-conservative	0.01
GSE99944	GSE99944_Digo_expression_results_significatif.xlsx-sheet-padj<=0.10		anti-conservative	0.01		anti-conservative	0.01
GSE85385	GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-H3WT_DMSO_x_K27M_DMSO		anti-conservative	0.78	NA	NA	NA
GSE85385	GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-H3WT_DMSO_x_H3WT_EPZ		anti-conservative	0.84	NA	NA	NA
GSE85385	GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-K27M_DMSO_x_K27M_EPZ		anti-conservative	0.85	NA	NA	NA
GSE93774	GSE93774_Full_gene_list-Control_vs_KO.csv.gz		anti-conservative	0.61	NA	NA	NA
GSE48812	GSE48812_6h_PRECvsLNCAP.diff.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE48812	GSE48812_6h_PRECvsLNCAP.diff.txt.gz-set-1		anti-conservative	0.01	NA	NA	NA
GSE48812	GSE48812_6h_PRECvsLNCAP.diff.txt.gz-set-2		anti-conservative	0.01	NA	NA	NA
GSE93339	GSE93339_e125_lung_DEG.txt.gz		anti-conservative	0.02	NA	NA	NA
GSE56169	GSE56169_normalized_RNASeq_Ctrl_vs_E2a.txt.gz		anti-conservative	0.37	NA	NA	NA
GSE48812	GSE48812_6h_PRECvsPC3.diff.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE48812	GSE48812_6h_PRECvsPC3.diff.txt.gz-set-1		anti-conservative	0.01	NA	NA	NA
GSE48812	GSE48812_6h_PRECvsPC3.diff.txt.gz-set-2		anti-conservative	0.01	NA	NA	NA
GSE83541	GSE83541_All_Genes_ZnfTG_Muscle_DESeq2_38.txt.gz		anti-conservative	0.82		anti-conservative	0.70
GSE63836	GSE63836_C15Dx_versus_Untr.DESeq.txt.gz		anti-conservative	0.63		anti-conservative	0.42
GSE98526	GSE98526_A12_vs_UA159T5.txt.gz		anti-conservative	0.58	NA	NA	NA
GSE89004	GSE89004_ppGpp0_vs_H78_differential_all.xls.gz		anti-conservative	0.44		anti-conservative	0.21
GSE75962	GSE75962_control_vs_H2O2.DEseq.txt.gz		anti-conservative	0.77		anti-conservative	0.69
GSE78824	GSE78824_Cuffdiff_transcript_differential_expression_testing.tab.gz		anti-conservative	0.78	NA	NA	NA
GSE66148	GSE66148_NC_v_CNS.txt.gz-set-0		anti-conservative	0.55	NA	NA	NA
GSE66148	GSE66148_NC_v_CNS.txt.gz-set-1		anti-conservative	0.52	NA	NA	NA
GSE66148	GSE66148_NC_v_CNS.txt.gz-set-2		anti-conservative	0.54	NA	NA	NA
GSE64242	GSE64242_cufdiff_isoform_exp.diff.gz		anti-conservative	0.93	NA	NA	NA
GSE59980	GSE59980_RNA-seq_598-SKD.txt.gz-set-1		anti-conservative	0.39	NA	NA	NA
GSE98526	GSE98526_A1_vs_UA159T5.txt.gz		anti-conservative	0.80	NA	NA	NA
GSE70141	GSE70141_Ax2_0H_1+2_ChdC_0H_1+2_DESeq.results.genenames.txt.gz		anti-conservative	0.61		anti-conservative	0.38
GSE70141	GSE70141_Ax2_0H_1_2_Ax2_10H_1_2_DESeq.results.genenames.txt.gz		anti-conservative	0.22		anti-conservative	0.06
GSE84737	GSE84737_All_genes_unfiltered_DE.txt.gz		anti-conservative	0.45	NA	NA	NA
GSE80176	GSE80176_HMLER_Ctrl_vs_DAC_Cuffdiff.txt.gz		anti-conservative	0.00	NA	NA	NA
GSE73893	GSE73893_DEseq-rip_significant_sites.txt.gz		anti-conservative	0.00	NA	NA	NA
GSE98526	GSE98526_UA159T5_vs_UA159T0.txt.gz		anti-conservative	0.93	NA	NA	NA
GSE70141	GSE70141_Ax2_10H_1_2_ChdC_12H_1_2_DESeq.results.genenames.txt.gz		anti-conservative	0.30		anti-conservative	0.15
GSE84737	GSE84737_Genes_filtered_DE.txt.gz		anti-conservative	0.47	NA	NA	NA
GSE73376	GSE73376_full_list_edgeR_annotated_DGCR8.txt.gz		anti-conservative	0.80	NA	NA	NA
GSE75147	GSE75147_regulated.phf5a_kd_402.down.G166.list.txt.gz		anti-conservative	0.02	NA	NA	NA
GSE99170	GSE99170_NormalizedData.xls.gz-sheet-normalized data		anti-conservative	0.00	NA	NA	NA
GSE74103	GSE74103_Tobacco_FS_v_WT_DESeq_refGene.all.annotated.txt.gz		anti-conservative	0.62		anti-conservative	0.53
GSE71185	GSE71185_CHD8_CRISPR_RNASeq_Cuffdiff_PolyA.txt.gz		anti-conservative	0.38	NA	NA	NA
GSE73376	GSE73376_full_list_edgeR_annotated_RRP6.txt.gz		anti-conservative	0.82	NA	NA	NA
GSE93684	GSE93684_S1-1A-vs-R1-1A.compare.txt.gz		anti-conservative	0.30	NA	NA	NA
GSE74103	GSE74103_Tobacco_G1_v_WT_DESeq_refGene.all.annotated.txt.gz		anti-conservative	0.42		anti-conservative	0.27
GSE71185	GSE71185_CHD8_Knockdown_RNASeq_Cuffdiff_PolyA.txt.gz		anti-conservative	0.47	NA	NA	NA
GSE90977	GSE90977_RNA-seq_COMPLETE_4Con-4CJD_SETS_DEFINITIVE_log2FC_0.5.xlsx.gz-sheet-120 dpi		anti-conservative	0.06		anti-conservative	0.01
GSE90977	GSE90977_RNA-seq_COMPLETE_4Con-4CJD_SETS_DEFINITIVE_log2FC_0.5.xlsx.gz-sheet-180 dpi		anti-conservative	0.10		anti-conservative	0.05
GSE74103	GSE74103_Tobacco_GS_v_WT_DESeq_refGene.all.annotated.txt.gz		anti-conservative	0.29		anti-conservative	0.23
GSE71185	GSE71185_NSD3_Knockdown_RNASeq_Cuffdiff_NSR.txt.gz		anti-conservative	0.90	NA	NA	NA
GSE75147	GSE75147_regulated.phf5a_kd_861.down.0827.list.txt.gz		anti-conservative	0.02	NA	NA	NA
GSE62200	GSE62200_Table_S4.xls.gz-sheet-Table S5 N2Y6-M VS LYP9-M		anti-conservative	0.81	NA	NA	NA
GSE90977	GSE90977_RNA_seq_COMPLETE_4_4_SETS_DEFINITIVE.xlsx.gz-sheet-120 dpi		anti-conservative	0.54		anti-conservative	0.37
GSE90977	GSE90977_RNA_seq_COMPLETE_4_4_SETS_DEFINITIVE.xlsx.gz-sheet-180 dpi		anti-conservative	0.82		anti-conservative	0.83
GSE95687	GSE95687_sleuthResults.txt.gz		anti-conservative	0.71	NA	NA	NA
GSE71185	GSE71185_NSD3_Knockdown_RNASeq_Cuffdiff_PolyA.txt.gz		anti-conservative	0.77	NA	NA	NA
GSE75147	GSE75147_regulated.phf5a_kd_861.down.G166.list.txt.gz		anti-conservative	0.01	NA	NA	NA
GSE77398	GSE77398_mal_all6_cuffdiff_genes.xls.gz		anti-conservative	0.76	NA	NA	NA
GSE67646	GSE67646_DESeq_1.10.1.txt.gz		anti-conservative	0.67		anti-conservative	0.25
GSE90478	GSE90478_Candidates_B_v_A_withNormData.csv.gz		anti-conservative	0.00		anti-conservative	0.00
GSE75147	GSE75147_regulated.phf5a_kd_861.up.G166.list.txt.gz		anti-conservative	0.04	NA	NA	NA
GSE54846	GSE54846_130529.DESeq.120813.combined-htseq-Luc123-m1_123.HGNC.protein_coding.rsgt20.txt.gz		anti-conservative	0.79		anti-conservative	0.45
GSE90478	GSE90478_Candidates_D_v_B_withNormData_CL.csv.gz		anti-conservative	0.00		anti-conservative	0.00
GSE80354	GSE80354_Gata6_DEseq2_res.csv.gz		anti-conservative	0.78		anti-conservative	0.87
GSE94534	GSE94534_MSTR_gene-P005_FC1.2_FPKM2.txt.gz		anti-conservative	0.02	NA	NA	NA
GSE79916	GSE79916_Dataset_S1-JUM_output_for_differential_AS_analyses_of_PSIdeltaAB_and_full-length_PSI_male_fly_heads.xls.gz		anti-conservative	0.13	NA	NA	NA
GSE78240	GSE78240_DESeq_Output.txt.gz		anti-conservative	0.66		anti-conservative	0.59
GSE73887	GSE73887_C6661_EBNA1_vs_C6661_IgG.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_C6661_EBNA1_vs_C6661_IgG.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE80135	GSE80135_Lipo_siProx_SC_results.csv.gz		anti-conservative	0.95		anti-conservative	0.82
GSE73887	GSE73887_C6661_EBNA1_vs_LCL_EBNA1.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_C6661_EBNA1_vs_LCL_EBNA1.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE44402	GSE44402_QW_Table_S2-AS_targets_of_PQBP1_identified_from_RNA-seq.xlsx.gz		anti-conservative	0.23	NA	NA	NA
GSE79916	GSE79916_Dataset_S4-DESeq2_output_for_differential_overall_gene_expression_level_analysis_of_PSIdeltaAB_and_full-length_PSI_male_fly_heads.xls.gz		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_C6661_EBNA1_vs_MUTU_EBNA1.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_C6661_EBNA1_vs_MUTU_EBNA1.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE72390	GSE72390_DiffExpr_Location_7-12_vs_1-6_Oncorhynchus_keta_de_novo.xlsx		anti-conservative	0.90		anti-conservative	0.79
GSE85329	GSE85329_IGF_project_IGF_results.txt.gz		anti-conservative	0.69		anti-conservative	0.55
GSE73887	GSE73887_C6661_EBNA1_vs_RAJI_EBNA1.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_C6661_EBNA1_vs_RAJI_EBNA1.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE75832	GSE75832_DifferentialExpression_groupwise_comparisons.xlsx-sheet-P14_P2_gene_exp_down		anti-conservative	0.76	NA	NA	NA
GSE73887	GSE73887_C6661_EBNA1_vs_combine_IgG.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_C6661_EBNA1_vs_combine_IgG.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE56253	GSE56253_GeneSpring_NGS_processed_data.txt.gz		anti-conservative	0.00	NA	NA	NA
GSE52402	GSE52402_B19P16_B20P3_RPKM.txt.gz		anti-conservative	0.63	NA	NA	NA
GSE85321	GSE85321_Supplemental_Table_4_YAR_vs_YAD_RNA_seq_.xls.gz-sheet-EV_YAD_YAR_isoformexp		anti-conservative	0.46	NA	NA	NA
GSE80135	GSE80135_siNeg_siProx_sig_results.csv.gz		anti-conservative	0.79		anti-conservative	0.50
GSE73887	GSE73887_C6661_EBNA1_vs_combine_IgG_3.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_C6661_EBNA1_vs_combine_IgG_3.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE77427	GSE77427_table_S1.xls.gz		anti-conservative	0.00	NA	NA	NA
GSE74993	GSE74993_SupplementalTables.xlsx-sheet-Table S1		anti-conservative	0.50		anti-conservative	0.33
GSE74993	GSE74993_SupplementalTables.xlsx-sheet-Table S3		anti-conservative	0.68		anti-conservative	0.46
GSE71902	GSE71902_WILD-vs-CPH2.txt.gz		anti-conservative	0.83	NA	NA	NA
GSE61954	GSE61954_all_genes_expression_values_supp_table.txt.gz		anti-conservative	0.77		anti-conservative	0.59
GSE97421	GSE97421_GFP_RFP.txt.gz		anti-conservative	0.57		anti-conservative	0.31
GSE73887	GSE73887_LCL_EBNA1_vs_C6661_EBNA1.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_LCL_EBNA1_vs_C6661_EBNA1.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE62785	GSE62785_Table_S1_Genes_differentially_expressed_in_hns_mutant_in_mid-exponential_phase.xls.gz-sheet-status = OK		anti-conservative	0.86	NA	NA	NA
GSE97421	GSE97421_GFP_Whole.txt.gz		anti-conservative	0.34		anti-conservative	0.04
GSE81128	GSE81128_DESeq2_Results.txt.gz		anti-conservative	0.32		anti-conservative	0.14
GSE71710	GSE71710_siDGCR8_v_siSCR_DESeq_gencode.all.symbol.txt.gz		anti-conservative	0.84		anti-conservative	0.79
GSE75731	GSE75731_ckvsd119a_gene_exp_diff.txt.gz		anti-conservative	0.49	NA	NA	NA
GSE73887	GSE73887_LCL_EBNA1_vs_LCL_IgG.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_LCL_EBNA1_vs_LCL_IgG.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE65072	GSE65072_DESeq_plusDOX_minusDOX.xlsx		anti-conservative	0.55	NA	NA	NA
GSE62785	GSE62785_Table_S2_Genes_differentially_expressed_in_hns_mutant_in_early_stationary_phase.xls.gz-sheet-status = ok		anti-conservative	0.78	NA	NA	NA
GSE75731	GSE75731_ckvsdrug_gene_exp_diff.txt.gz		anti-conservative	0.64	NA	NA	NA
GSE73887	GSE73887_LCL_EBNA1_vs_MUTU_EBNA1.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_LCL_EBNA1_vs_MUTU_EBNA1.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE71916	GSE71916_Expression_Cufflinks_siRbfox1_3+EGFP_compared_to_siNT+EGFP.txt.gz		anti-conservative	0.96	NA	NA	NA
GSE65935	GSE65935_DKOrvsDKOnr_diffexp.txt.gz		anti-conservative	0.53	NA	NA	NA
GSE33141	GSE33141_BWADETsKOvsWT2.xls.gz-sheet-DETs-FC1.5-pval0.05		anti-conservative	0.01	NA	NA	NA
GSE96626	GSE96626_DE_TrtVsVeh.xlsx		anti-conservative	0.89		anti-conservative	0.87
GSE85360	GSE85360_P140_Setd1b_DEGS_021015.txt.gz		anti-conservative	0.00		anti-conservative	0.00
GSE89773	GSE89773_combined_expression_table.txt.gz-set-0		anti-conservative	0.41		anti-conservative	0.21
GSE89773	GSE89773_combined_expression_table.txt.gz-set-1		anti-conservative	0.50		anti-conservative	0.26
GSE75731	GSE75731_ckvsv149a_gene_exp_diff.txt.gz		anti-conservative	0.73	NA	NA	NA
GSE66506	GSE66506_DE_analysis_010714.xlsx-sheet-SigGenes		anti-conservative	0.00	NA	NA	NA
GSE65935	GSE65935_WTvsDKOnr_diffexp.txt.gz		anti-conservative	0.49	NA	NA	NA
GSE59814	GSE59814_processed_data.txt.gz		anti-conservative	0.53	NA	NA	NA
GSE73887	GSE73887_LCL_EBNA1_vs_combine_IgG.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_LCL_EBNA1_vs_combine_IgG.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE65935	GSE65935_WTvsDKOr_diffexp.txt.gz		anti-conservative	0.47	NA	NA	NA
GSE33141	GSE33141_TopHatDETsKOvsWT.xls.gz		anti-conservative	0.01	NA	NA	NA
GSE77218	GSE77218_A3_A2.xlsx-sheet-diff_list		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_LCL_EBNA1_vs_combine_IgG_3.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_LCL_EBNA1_vs_combine_IgG_3.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE48166	GSE48166_Cufflinks_FPKM.txt.gz		anti-conservative	0.95	NA	NA	NA
GSE77218	GSE77218_A4_A2.xlsx-sheet-diff_list		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_MUTU_EBNA1_vs_C6661_EBNA1.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_MUTU_EBNA1_vs_C6661_EBNA1.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE65973	GSE65973_NLS_deseq2_all_alluniq_vs_mmu9htdp43nls.txt.gz		anti-conservative	0.37		anti-conservative	0.31
GSE90889	GSE90889_geo_hiPSC-RPE_Vehicle_vs_NAM.xlsx		anti-conservative	0.69		anti-conservative	0.65
GSE92282	GSE92282_Results.csv.gz		anti-conservative	0.00	NA	NA	NA
GSE77218	GSE77218_A4_A3.xlsx-sheet-diff_list		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_MUTU_EBNA1_vs_LCL_EBNA1.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_MUTU_EBNA1_vs_LCL_EBNA1.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE74920	GSE74920_SupplementalTable1.xlsx.gz		anti-conservative	0.50		anti-conservative	0.33
GSE65487	GSE65487_deseq.rminus_rplus.ensembl.csv.gz		anti-conservative	0.67		anti-conservative	0.32
GSE97174	GSE97174_DEseq_DifferentialGeneExpression.txt.gz		anti-conservative	0.00	NA	NA	NA
GSE71539	GSE71539_TP0vsTP23_gene_results.txt.gz		anti-conservative	0.86	NA	NA	NA
GSE73887	GSE73887_MUTU_EBNA1_vs_MUTU_IgG.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_MUTU_EBNA1_vs_MUTU_IgG.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE74920	GSE74920_SupplementalTable3.xlsx.gz		anti-conservative	0.68		anti-conservative	0.46
GSE71539	GSE71539_TP0vsTP23_tag_results.txt.gz		anti-conservative	0.85	NA	NA	NA
GSE65487	GSE65487_deseq.rplus_gplus.ensembl.csv.gz		anti-conservative	0.50		anti-conservative	0.19
GSE54440	GSE54440_WT_Z2_RNAseq_rep2.txt.gz		anti-conservative	0.51	NA	NA	NA
GSE79039	GSE79039_Feske_Tcon_DKO_vs_WT_norm_counts_DE_expression_all.txt.gz		anti-conservative	0.62		anti-conservative	0.41
GSE75993	GSE75993_processed_data.xls.gz-sheet-1_WT_vs_KO_DESeq_All		anti-conservative	0.94	NA	NA	NA
GSE73887	GSE73887_MUTU_EBNA1_vs_combine_IgG.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_MUTU_EBNA1_vs_combine_IgG.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE41766	GSE41766_IBH1-Ox_vs_Col.txt.gz		anti-conservative	0.00		anti-conservative	0.00
GSE79039	GSE79039_Feske_Tfh_DKO_vs_WT_norm_counts_DE_expression_all.txt.gz		anti-conservative	0.73		anti-conservative	0.52
GSE73887	GSE73887_MUTU_EBNA1_vs_combine_IgG_3.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_MUTU_EBNA1_vs_combine_IgG_3.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE41766	GSE41766_PRE1-Ox_IBH1-Ox_vs_IBH1-Ox.txt.gz		anti-conservative	0.62		anti-conservative	0.29
GSE63224	GSE63224_All_unigene_expression.txt.gz-set-5		anti-conservative	0.94	NA	NA	NA
GSE73887	GSE73887_RAJI_EBNA1_vs_C6661_EBNA1.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_RAJI_EBNA1_vs_C6661_EBNA1.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE67334	GSE67334_TFH.Vs.TH1.DESeq_Analysis_DE_Genes.txt.gz		anti-conservative	0.79		anti-conservative	0.56
GSE63224	GSE63224_Degradome_result.xlsx		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_RAJI_EBNA1_vs_LCL_EBNA1.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_RAJI_EBNA1_vs_LCL_EBNA1.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE71862	GSE71862_DeSeq2_MCF7_vs_MCF10A_foldchange.txt.gz		anti-conservative	0.46		anti-conservative	0.45
GSE80349	GSE80349_results.txt.gz-set-0		anti-conservative	0.07	NA	NA	NA
GSE73887	GSE73887_RAJI_EBNA1_vs_MUTU_EBNA1.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_RAJI_EBNA1_vs_MUTU_EBNA1.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE48671	GSE48671_all.GeneDiffExp.txt.gz-set-0		anti-conservative	0.27	NA	NA	NA
GSE48671	GSE48671_all.GeneDiffExp.txt.gz-set-1		anti-conservative	0.16	NA	NA	NA
GSE92506	GSE92506_DEseq2_wholeTable.txt.gz		anti-conservative	0.64		anti-conservative	0.42
GSE47773	GSE47773_Matrix_table.txt.gz		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_RAJI_EBNA1_vs_RAJI_IgG.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_RAJI_EBNA1_vs_RAJI_IgG.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE36781	GSE36781_gene_exp_diff.txt.gz		anti-conservative	0.96	NA	NA	NA
GSE40478	GSE40478_output_score.txt.gz		anti-conservative	0.32	NA	NA	NA
GSE63510	GSE63510_ko_vs_wt_fold_changes_p_values.txt.gz		anti-conservative	0.54		anti-conservative	0.29
GSE71093	GSE71093_a456_vs_a123_sig.txt.gz		anti-conservative	0.02	NA	NA	NA
GSE73887	GSE73887_RAJI_EBNA1_vs_combine_IgG.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_RAJI_EBNA1_vs_combine_IgG.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE61491	GSE61491_CHDKD_differential_expression.txt.gz		anti-conservative	0.95	NA	NA	NA
GSE57580	GSE57580_different_expressed_gene_list_between_gynoecious_vs_monoecious.txt.gz		anti-conservative	0.00	NA	NA	NA
GSE87167	GSE87167_all_genes.txt.gz		anti-conservative	0.38	NA	NA	NA
GSE61290	GSE61290_Scr_Vs_shMyb.txt.gz		anti-conservative	0.04	NA	NA	NA
GSE64359	GSE64359_DE_dfwt_combined.txt.gz		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_RAJI_EBNA1_vs_combine_IgG_3.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE73887	GSE73887_RAJI_EBNA1_vs_combine_IgG_3.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE37682	GSE37682_RAW.txt.gz		anti-conservative	0.69	NA	NA	NA
GSE81059	GSE81059_cns-control_vs_head-control.csv.gz		anti-conservative	0.51		anti-conservative	0.13
GSE66793	GSE66793_cmp1-3-geo-gene.tsv.gz		anti-conservative	0.86	NA	NA	NA
GSE69001	GSE69001_DE_list_planktonic_v_biolfim.txt.gz		anti-conservative	0.44	NA	NA	NA
GSE72293	GSE72293_E17_vs_P9_filtered_rpkm5.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE72293	GSE72293_E17_vs_P9_filtered_rpkm5.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE58495	GSE58495_diffexp_LSK.txt.gz-set-0		anti-conservative	0.66	NA	NA	NA
GSE58495	GSE58495_diffexp_LSK.txt.gz-set-1		anti-conservative	0.58	NA	NA	NA
GSE69001	GSE69001_DE_list_planktonic_v_plate.txt.gz		anti-conservative	0.33	NA	NA	NA
GSE63948	GSE63948_Supplemental_Table2_DeepSeq_Fanourgakis_etAl.xls.gz-sheet-short 3’UTR transcripts(<350nt)		anti-conservative	0.90	NA	NA	NA
GSE63948	GSE63948_Supplemental_Table2_DeepSeq_Fanourgakis_etAl.xls.gz-sheet-medium 3’UTR transcripts		anti-conservative	0.95	NA	NA	NA
GSE63948	GSE63948_Supplemental_Table2_DeepSeq_Fanourgakis_etAl.xls.gz-sheet-long 3’UTR transcripts(>1500nt)		anti-conservative	0.87	NA	NA	NA
GSE67756	GSE67756_LA2A-vs-LC2A.compare.txt.gz		anti-conservative	0.42	NA	NA	NA
GSE81913	GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-4-5-2016_gran_v_iRed.csv		anti-conservative	0.61		anti-conservative	0.43
GSE81913	GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-Up		anti-conservative	0.46	NA	NA	NA
GSE81913	GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-Down		anti-conservative	0.58		anti-conservative	0.48
GSE69001	GSE69001_DE_list_plate_v_biofilm.txt.gz		anti-conservative	0.38	NA	NA	NA
GSE67756	GSE67756_LA2A-vs-LC2A.diff_annot.txt.gz		anti-conservative	0.00	NA	NA	NA
GSE41873	GSE41873_FPKM_all_genes_from_CuffDiff.txt.gz		anti-conservative	0.74	NA	NA	NA
GSE86211	GSE86211_CmrA_transcriptome_Expression_of_all_genes.xlsx-sheet-PA14vsPJ01		anti-conservative	0.93	NA	NA	NA
GSE86211	GSE86211_CmrA_transcriptome_Expression_of_all_genes.xlsx-sheet-PJ01vsPJ01dT		anti-conservative	0.96	NA	NA	NA
GSE77025	GSE77025_gene_exp.diff.gz		anti-conservative	0.35	NA	NA	NA
GSE53040	GSE53040_wtDMSOvswtXP13.txt.gz		anti-conservative	0.69	NA	NA	NA
GSE68846	GSE68846_KO_vs_Control_05.csv.gz		anti-conservative	0.00	NA	NA	NA
GSE67756	GSE67756_LB2A-vs-LA2A.compare.txt.gz		anti-conservative	0.44	NA	NA	NA
GSE32038	GSE32038_cds.diff.gz		anti-conservative	0.07	NA	NA	NA
GSE66158	GSE66158_nc_vs_59_differentially_expressed_genes_FPKM_GEO.txt.gz		anti-conservative	0.00	NA	NA	NA
GSE68846	GSE68846_KO_vs_Control_10.csv.gz		anti-conservative	0.00	NA	NA	NA
GSE67756	GSE67756_LB2A-vs-LA2A.diff_annot.txt.gz		anti-conservative	0.00	NA	NA	NA
GSE81043	GSE81043_sh109_final_unique_DESeq_InfFixed_DiffExp.xlsx.gz		anti-conservative	0.48		anti-conservative	0.14
GSE68846	GSE68846_KO_vs_Control_15.csv.gz		anti-conservative	0.01	NA	NA	NA
GSE67756	GSE67756_LB2A-vs-LC2A.compare.txt.gz		anti-conservative	0.53	NA	NA	NA
GSE41367	GSE41367_brenneri_gns.expr.txt.gz		anti-conservative	0.36	NA	NA	NA
GSE97060	GSE97060_122KOMouse_SleuthOutput.txt.gz		anti-conservative	0.46	NA	NA	NA
GSE68846	GSE68846_KO_vs_Control_20.csv.gz		anti-conservative	0.01		anti-conservative	0.01
GSE67756	GSE67756_LB2A-vs-LC2A.diff_annot.txt.gz		anti-conservative	0.00	NA	NA	NA
GSE41367	GSE41367_brenneri_soap.expr.txt.gz		anti-conservative	0.37	NA	NA	NA
GSE37001	GSE37001_DEgenes.txt.gz		anti-conservative	0.00		anti-conservative	0.00
GSE64513	GSE64513_FOXD3_vs_Control_gene_exp_diff_anno.txt.gz		anti-conservative	0.61	NA	NA	NA
GSE67756	GSE67756_LB2A-vs-LF1A.compare.txt.gz		anti-conservative	0.49	NA	NA	NA
GSE41367	GSE41367_briggsae_gns.expr.txt.gz		anti-conservative	0.33	NA	NA	NA
GSE38764	GSE38764_DESeq.nbVsneuron-orig-FDR0.01.txt.gz		anti-conservative	0.00		anti-conservative	0.00
GSE37001	GSE37001_DEintrons.txt.gz		anti-conservative	0.00		anti-conservative	0.00
GSE95108	GSE95108_DEtest_wo_wt1.xlsx-sheet-DEtest		anti-conservative	0.76	NA	NA	NA
GSE64513	GSE64513_FOXD3_vs_Control_gene_exp_diff_sig_anno.txt.gz		anti-conservative	0.00	NA	NA	NA
GSE67756	GSE67756_LB2A-vs-LF1A.diff_annot.txt.gz		anti-conservative	0.00	NA	NA	NA
GSE41367	GSE41367_briggsae_soap.expr.txt.gz		anti-conservative	0.35	NA	NA	NA
GSE37001	GSE37001_DEisoforms.txt.gz		anti-conservative	0.00	NA	NA	NA
GSE41367	GSE41367_elegans_gns.expr.txt.gz		anti-conservative	0.30	NA	NA	NA
GSE79286	GSE79286_CYC2vsWT_Conj-2.5hr_RNA-Seq.xlsx-sheet-Significant-FULL		anti-conservative	0.00	NA	NA	NA
GSE41367	GSE41367_elegans_soap.expr.txt.gz		anti-conservative	0.26	NA	NA	NA
GSE32038	GSE32038_promoters.diff.gz		anti-conservative	0.05	NA	NA	NA
GSE77568	GSE77568_CHIP_DMSO_vs_JQ1.txt.gz		anti-conservative	0.00	NA	NA	NA
GSE83375	GSE83375_GB_glia.FPKM.txt.gz		anti-conservative	0.66	NA	NA	NA
GSE79286	GSE79286_CYC2vsWT_Conj-2hr_RNA-Seq.xlsx-sheet-Significant-FULL		anti-conservative	0.00	NA	NA	NA
GSE79286	GSE79286_CYC2vsWT_Conj-2hr_RNA-Seq.xlsx-sheet-Significant-UP		anti-conservative	0.00	NA	NA	NA
GSE64413	GSE64413_orf57_pval_cutoff_0.001.csv.gz		anti-conservative	0.00	NA	NA	NA
GSE41367	GSE41367_japonica_gns.expr.txt.gz		anti-conservative	0.29	NA	NA	NA
GSE32038	GSE32038_splicing.diff.gz		anti-conservative	0.06	NA	NA	NA
GSE74929	GSE74929_Diff_Exp.txt.gz-set-0		anti-conservative	0.00	NA	NA	NA
GSE74929	GSE74929_Diff_Exp.txt.gz-set-1		anti-conservative	0.22	NA	NA	NA
GSE77568	GSE77568_CHIP_DMSO_vs_input.txt.gz		anti-conservative	0.00	NA	NA	NA
GSE79286	GSE79286_CYC2vsWT_Conj-3.5hr_RNA-Seq.xlsx-sheet-Significant-FULL		anti-conservative	0.00	NA	NA	NA
GSE64413	GSE64413_orf57_pval_cutoff_0.05.csv.gz		anti-conservative	0.04	NA	NA	NA
GSE41590	GSE41590_Gene_expression.txt.gz		anti-conservative	0.01		anti-conservative	0.01
GSE57217	GSE57217_bck1wt_geneexp_diff.txt.gz		anti-conservative	0.73	NA	NA	NA
GSE41367	GSE41367_japonica_soap.expr.txt.gz		anti-conservative	0.29	NA	NA	NA
GSE79820	GSE79820_all_de_cuffdiff.tsv.gz		anti-conservative	0.00	NA	NA	NA
GSE41367	GSE41367_remanei_gns.expr.txt.gz		anti-conservative	0.27	NA	NA	NA
GSE57254	GSE57254_WT_KD_CELF1_Fold_change.txt.gz		anti-conservative	0.00	NA	NA	NA
GSE57217	GSE57217_mkk2wt_geneexp_diff.txt.gz		anti-conservative	0.80	NA	NA	NA
GSE41367	GSE41367_remanei_soap.expr.txt.gz		anti-conservative	0.25	NA	NA	NA
GSE80264	GSE80264_Group_2_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-0		anti-conservative	0.01	NA	NA	NA
GSE80264	GSE80264_Group_2_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-1		anti-conservative	0.00	NA	NA	NA
GSE80264	GSE80264_Group_2_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-2		anti-conservative	0.02	NA	NA	NA
GSE80264	GSE80264_Group_2_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-3		anti-conservative	0.56	NA	NA	NA
GSE43189	GSE43189_processed_h99_rim101.csv.gz		anti-conservative	0.46	NA	NA	NA
GSE90615	GSE90615_DifferentialExpression.xlsx-sheet-Vehicle_12dP-MI_vs_Pre-MI		anti-conservative	0.48	NA	NA	NA
GSE90615	GSE90615_DifferentialExpression.xlsx-sheet-Sfrp2_12dP-MI_vs_Pre-MI		anti-conservative	0.43	NA	NA	NA
GSE90615	GSE90615_DifferentialExpression.xlsx-sheet-1dP-MI_vs_Pre-MI		anti-conservative	0.68	NA	NA	NA
GSE80264	GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-0		anti-conservative	0.01	NA	NA	NA
GSE80264	GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-1		anti-conservative	0.03	NA	NA	NA
GSE80264	GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-2		anti-conservative	0.00	NA	NA	NA
GSE80264	GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-3		anti-conservative	0.54	NA	NA	NA
GSE57217	GSE57217_mpk1wt_geneexp_diff.txt.gz		anti-conservative	0.77	NA	NA	NA
GSE44457	GSE44457_Human_transcriptome_deg.txt.gz		anti-conservative	0.00	NA	NA	NA
GSE94512	GSE94512_NaPi_vs_Lys.txt.gz		anti-conservative	0.95		anti-conservative	0.98
GSE90013	GSE90013_cds_exp.diff_A_B_cds.txt.gz		anti-conservative	0.03	NA	NA	NA
GSE75510	GSE75510_diffExonExprZH1vsB6.txt.gz		anti-conservative	0.94	NA	NA	NA
GSE67674	GSE67674_RNA-seq_analysis_PBSDMSOvsPBSGSK-J4.txt.gz		anti-conservative	0.95	NA	NA	NA
GSE62448	GSE62448_merged_normalized_counts.tab.gz-set-0		anti-conservative	0.00		anti-conservative	0.00
GSE62448	GSE62448_merged_normalized_counts.tab.gz-set-1		anti-conservative	0.00		anti-conservative	0.00
GSE90013	GSE90013_gene_exp.diff_A_B_Gene.txt.gz		anti-conservative	0.02	NA	NA	NA
GSE75510	GSE75510_diffExonExprZH3vsB6.txt.gz		anti-conservative	0.91	NA	NA	NA
GSE69110	GSE69110_d2GFP_vs_d2Sox9OE.deseq.res.csv.gz		anti-conservative	0.58		anti-conservative	0.28
GSE90712	GSE90712_Thy1_positive_E_Cad_positive_vs_Thy1_positive_E_Cad_negative.DESeq2_Results.tsv.gz		anti-conservative	0.60		anti-conservative	0.36
GSE90013	GSE90013_isoform_exp.diff_A_B_Isoform.txt.gz		anti-conservative	0.03	NA	NA	NA
GSE70876	GSE70876_Additional_file_4.xls.gz		anti-conservative	0.32	NA	NA	NA
GSE95337	GSE95337_DESeq_EH_Control.vs.dKO.res.txt.gz		anti-conservative	0.56		anti-conservative	0.38
GSE79143	GSE79143_SNPCountsTable.txt.gz		anti-conservative	0.49	NA	NA	NA
GSE90013	GSE90013_tss_group_exp.diff_A_B_tss.txt.gz		anti-conservative	0.03	NA	NA	NA
GSE52153	GSE52153_czt-1DMSOvsczt-1STS.txt.gz		anti-conservative	0.55	NA	NA	NA
GSE40948	GSE40948_NPC_vs_ESC_2replicates_result_10.transcript_summary.tsv.gz		anti-conservative	0.48	NA	NA	NA
GSE82134	GSE82134_NCBI_res_root_deseq_full.xlsx		anti-conservative	0.61	NA	NA	NA
GSE78967	GSE78967_Deseq_Analysis.xlsx		anti-conservative	0.47		anti-conservative	0.38
GSE52153	GSE52153_wtDMSOvswtSTS.txt.gz		anti-conservative	0.71	NA	NA	NA
GSE53265	GSE53265_DESeq.PBNbVsLBNb-orig-FDR0.01.txt.gz		anti-conservative	0.00		anti-conservative	0.00
GSE87448	GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-0		anti-conservative	0.04	NA	NA	NA
GSE87448	GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-1		anti-conservative	0.02	NA	NA	NA
GSE87448	GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-2		anti-conservative	0.02	NA	NA	NA
GSE87448	GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-3		anti-conservative	0.03	NA	NA	NA
GSE87448	GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-4		anti-conservative	0.04	NA	NA	NA
GSE87448	GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-5		anti-conservative	0.02	NA	NA	NA
GSE87448	GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-6		anti-conservative	0.02	NA	NA	NA
GSE87448	GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-7		anti-conservative	0.03	NA	NA	NA
GSE87448	GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-8		anti-conservative	0.04	NA	NA	NA
GSE87448	GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-9		anti-conservative	0.02	NA	NA	NA
GSE87448	GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-10		anti-conservative	0.02	NA	NA	NA
GSE87448	GSE87448_1944_common_genes_from_Venn_Diagram.txt.gz-set-11		anti-conservative	0.03	NA	NA	NA
GSE66822	GSE66822_PRMT5-vs-WT_SC-mrna_counts.txt.gz		anti-conservative	0.83		anti-conservative	0.74
GSE53265	GSE53265_DESeq.PBNbVsPBNbMed27IR-orig-FDR0.01.txt.gz		anti-conservative	0.00		anti-conservative	0.00
GSE56439	GSE56439_DiffExprAnalysis_1.5_fold_.xlsx.gz-sheet-ABA vs CK(>1.5 fold)		anti-conservative	0.00	NA	NA	NA
GSE56439	GSE56439_DiffExprAnalysis_1.5_fold_.xlsx.gz-sheet-water defici VS ABA (>1.5 fold)		anti-conservative	0.00	NA	NA	NA
GSE39812	GSE39812_FB_result_transcript_summary.tsv.txt.gz		anti-conservative	0.65	NA	NA	NA
GSE87448	GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-0		anti-conservative	0.07	NA	NA	NA
GSE87448	GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-1		anti-conservative	0.03	NA	NA	NA
GSE87448	GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-2		anti-conservative	0.25	NA	NA	NA
GSE87448	GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-3		anti-conservative	0.23	NA	NA	NA
GSE87448	GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-0		anti-conservative	0.08	NA	NA	NA
GSE87448	GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-1		anti-conservative	0.15	NA	NA	NA
GSE87448	GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-2		anti-conservative	0.03	NA	NA	NA
GSE87448	GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-3		anti-conservative	0.22	NA	NA	NA
GSE87448	GSE87448_MYC_vs_CTRL_at_2fold-p005-3502_genes_Myc_Only.txt.gz-set-0		anti-conservative	0.07	NA	NA	NA
GSE87448	GSE87448_MYC_vs_CTRL_at_2fold-p005-3502_genes_Myc_Only.txt.gz-set-1		anti-conservative	0.03	NA	NA	NA
GSE75878	GSE75878_promoters.diff.gz		anti-conservative	0.44	NA	NA	NA
GSE75833	GSE75833_DESeq-processed_FB.control_vs_BR.txt.gz		anti-conservative	0.60		anti-conservative	0.14
GSE60968	GSE60968_VEC_vs_CRE_DE.txt.gz		anti-conservative	0.38	NA	NA	NA
GSE50535	GSE50535_diffexp_1.txt.gz-set-0		anti-conservative	0.63	NA	NA	NA
GSE50535	GSE50535_diffexp_1.txt.gz-set-1		anti-conservative	0.64	NA	NA	NA
GSE93827	GSE93827_LMP1_2a_vs_GFP.txt.gz		anti-conservative	0.51		anti-conservative	0.27
GSE75878	GSE75878_splicing.diff.gz		anti-conservative	0.38	NA	NA	NA
GSE70488	GSE70488_Day_vs_Night_sSeq.txt.gz		anti-conservative	0.35	NA	NA	NA
GSE59715	GSE59715_finalHiCRNAseqTable.csv.gz		anti-conservative	0.73		anti-conservative	0.44
GSE50535	GSE50535_diffexp_2.txt.gz		anti-conservative	0.56	NA	NA	NA
GSE83134	GSE83134_RYBPfl.DESeq2.Output.txt.gz-set-0		anti-conservative	0.92		anti-conservative	0.99
GSE50535	GSE50535_diffexp_3.txt.gz-set-0		anti-conservative	0.61	NA	NA	NA
GSE50535	GSE50535_diffexp_3.txt.gz-set-1		anti-conservative	0.30	NA	NA	NA
GSE80348	GSE80348_20160316_6h_wt_vs_mu.xlsx		anti-conservative	0.52	NA	NA	NA
GSE87398	GSE87398_gene_exp.diff.gz		anti-conservative	0.83	NA	NA	NA
GSE99096	GSE99096_Yang_Processed_data_Oxidative_Stress.xlsx		anti-conservative	0.31	NA	NA	NA
GSE70069	GSE70069_Deregulated_genes_upon_knock-down_of_Setdb1_in_C2C12.txt.gz		anti-conservative	0.00		anti-conservative	0.00
GSE52080	GSE52080_processed_data_pvalue-filtered.txt.gz		anti-conservative	0.00	NA	NA	NA
GSE85627	GSE85627_mDUX-mESC.xlsx.gz-sheet-Unsorted		anti-conservative	0.62		anti-conservative	0.16
GSE85627	GSE85627_mDUX-mESC.xlsx.gz-sheet-Sorted		anti-conservative	0.53		anti-conservative	0.18
GSE74171	GSE74171_expressed_transcript_aging_RNAseq_posterior_midgut.txt.gz		anti-conservative	0.51	NA	NA	NA
GSE93877	GSE93877_NB4_RNASeq_ATRA.txt.gz		anti-conservative	0.84		anti-conservative	0.75
GSE74171	GSE74171_processed_aging_data.txt.gz		anti-conservative	0.01		anti-conservative	0.00
GSE57482	GSE57482_output_score.txt.gz		anti-conservative	0.25	NA	NA	NA
GSE89238	GSE89238_SET2_KO_DESeq2_output.txt.gz		anti-conservative	0.63		anti-conservative	0.67
GSE93877	GSE93877_NB4_RNASeq_DMSO.txt.gz		anti-conservative	0.95		anti-conservative	0.93
GSE87398	GSE87398_genes_group_exp.diff.gz		anti-conservative	0.83	NA	NA	NA
GSE73323	GSE73323_gene_expression_profiles.txt.gz		anti-conservative	0.00	NA	NA	NA
GSE65688	GSE65688_gene_exp.diff_GFP_TAT_Gene.csv.gz		anti-conservative	0.02	NA	NA	NA
GSE59571	GSE59571_S13113_genesdiff.xlsx		anti-conservative	0.70	NA	NA	NA
GSE96999	GSE96999_DESeq2_miseq_output.txt.gz		anti-conservative	0.25		anti-conservative	0.23
GSE94280	GSE94280_DESeq2_results_Y_vs_O.txt.gz		anti-conservative	0.61		anti-conservative	0.33
GSE93313	GSE93313_DESeq_2Dvs3D.txt.gz		anti-conservative	0.77		anti-conservative	0.42
GSE74168	GSE74168_expressed_transcripts_RNAseq_GLIrnai_posterior_midgut_EC.txt.gz		anti-conservative	0.44	NA	NA	NA
GSE68998	GSE68998_DiffExpDeseq2_mdx2_NOut_3.6.14.csv.gz		anti-conservative	0.59		anti-conservative	0.47
GSE96999	GSE96999_DESeq2_nextseq_output.txt.gz		anti-conservative	0.41		anti-conservative	0.09
GSE93313	GSE93313_DESeq_2DvsTranswell.txt.gz		anti-conservative	0.67		anti-conservative	0.34
GSE86235	GSE86235_KORvsKOS.xls.gz		anti-conservative	0.00	NA	NA	NA
GSE36959	GSE36959_gene_exp_diff.txt.gz		anti-conservative	0.64	NA	NA	NA
GSE93313	GSE93313_DESeq_3DvsTranswell.txt.gz		anti-conservative	0.79		anti-conservative	0.55
GSE86054	GSE86054_gene_expression.txt.gz		anti-conservative	0.95		anti-conservative	0.89
GSE84481	GSE84481_3xTg.txt.gz		anti-conservative	0.05	NA	NA	NA
GSE72491	GSE72491_PCBP2_KO_v_WT_DESeq_gencode.all.name.txt.gz		anti-conservative	0.72		anti-conservative	0.68
GSE49587	GSE49587_ORvSmn_DEUtable.txt.gz		anti-conservative	0.77	NA	NA	NA
GSE93547	GSE93547_LMvsWTM_cleaned_deseq2.csv.gz		anti-conservative	0.51		anti-conservative	0.32
GSE85847	GSE85847_matrix_rnaseq_GEO_submission_jsantos20160817.txt.gz		anti-conservative	0.66		anti-conservative	0.57
GSE60191	GSE60191_RNA_halflives.xlsx.gz-sheet-Tabelle1		anti-conservative	0.32	NA	NA	NA
GSE84481	GSE84481_Neuro2a.txt.gz-set-0		anti-conservative	0.04	NA	NA	NA
GSE84481	GSE84481_Neuro2a.txt.gz-set-1		anti-conservative	0.04	NA	NA	NA
GSE51645	GSE51645_ASE_processed_data.txt.gz		anti-conservative	0.98	NA	NA	NA
GSE17970	GSE17970_supplemental_table_1.xls.gz		anti-conservative	0.47	NA	NA	NA
GSE50198	GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-0		anti-conservative	0.57		anti-conservative	0.35
GSE50198	GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-1		anti-conservative	0.46		anti-conservative	0.17
GSE50198	GSE50198_Tet1kd_vs_v6.5_DEXSeq_results.txt.gz		anti-conservative	0.67	NA	NA	NA
GSE50198	GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-1		anti-conservative	0.57		anti-conservative	0.31
GSE50198	GSE50198_Tet2kd_vs_v6.5_DEXSeq_results.txt.gz		anti-conservative	0.68	NA	NA	NA
GSE52058	GSE52058_Cuffdiff_Dana_TestisOvary.gene_exp.diff.gz		anti-conservative	0.35	NA	NA	NA
GSE52058	GSE52058_Cuffdiff_Dpse_TestisOvary.gene_exp.diff.gz		anti-conservative	0.42	NA	NA	NA
GSE55528	GSE55528_gene_exp_PA.diff.gz		anti-conservative	0.56	NA	NA	NA
GSE55528	GSE55528_gene_exp_SA.diff.gz		anti-conservative	0.68	NA	NA	NA
GSE56132	GSE56132_Pm_Si_expression.txt.gz-set-0		anti-conservative	0.67	NA	NA	NA
GSE56132	GSE56132_Pm_Si_expression.txt.gz-set-1		anti-conservative	0.57	NA	NA	NA
GSE58052	GSE58052_N.europaea_co-culture_over_single-culture.txt.gz		anti-conservative	0.61	NA	NA	NA
GSE58865	GSE58865_Hyphae_vs_Oidia_DESeq_results.txt.gz		anti-conservative	0.46		anti-conservative	0.03
GSE68176	GSE68176_Ophio1_1.gene_exp.diff.gz		anti-conservative	0.56	NA	NA	NA

Table 5: SRP and related stats for anti-conservative P value histograms. pi0 was calculated using qvalue::pi0est() function.

Accession	suppdata_id	Histogram	Type	SRP	pi0	fp	rs	ud	Histogram after filter	Type after filter	SRP after filter	pi0 after filter	fp after filter	rs after filter	ud after filter
GSE17970	GSE17970_supplemental_table_1.xls.gz		anti-conservative	0.95	0.46	397	7202	357	NA	NA	NA	NA	NA	NA	NA
GSE32038	GSE32038_cds.diff.gz		anti-conservative	1.00	0.06	560	10614	20	NA	NA	NA	NA	NA	NA	NA
GSE32038	GSE32038_promoters.diff.gz		anti-conservative	0.99	0.04	718	13444	194	NA	NA	NA	NA	NA	NA	NA
GSE32038	GSE32038_splicing.diff.gz		anti-conservative	1.00	0.07	857	16274	1	NA	NA	NA	NA	NA	NA	NA
GSE37682	GSE37682_RAW.txt.gz		anti-conservative	0.51	0.71	48	469	863	NA	NA	NA	NA	NA	NA	NA
GSE40478	GSE40478_output_score.txt.gz		anti-conservative	0.52	0.55	445	4367	7900	NA	NA	NA	NA	NA	NA	NA
GSE41367	GSE41367_brenneri_gns.expr.txt.gz		anti-conservative	0.84	0.18	756	12000	2832	NA	NA	NA	NA	NA	NA	NA
GSE41367	GSE41367_brenneri_soap.expr.txt.gz		anti-conservative	0.80	0.21	2569	39253	11892	NA	NA	NA	NA	NA	NA	NA
GSE41367	GSE41367_briggsae_gns.expr.txt.gz		anti-conservative	0.87	0.24	681	11290	1882	NA	NA	NA	NA	NA	NA	NA
GSE41367	GSE41367_briggsae_soap.expr.txt.gz		anti-conservative	0.85	0.24	764	12401	2488	NA	NA	NA	NA	NA	NA	NA
GSE41367	GSE41367_elegans_gns.expr.txt.gz		anti-conservative	0.91	0.18	747	12929	1385	NA	NA	NA	NA	NA	NA	NA
GSE41367	GSE41367_elegans_soap.expr.txt.gz		anti-conservative	0.95	0.12	1069	19328	1036	NA	NA	NA	NA	NA	NA	NA
GSE41367	GSE41367_japonica_gns.expr.txt.gz		anti-conservative	0.91	0.18	772	13347	1442	NA	NA	NA	NA	NA	NA	NA
GSE41367	GSE41367_japonica_soap.expr.txt.gz		anti-conservative	0.93	0.16	2990	52587	4551	NA	NA	NA	NA	NA	NA	NA
GSE41367	GSE41367_remanei_gns.expr.txt.gz		anti-conservative	0.94	0.15	996	17833	1168	NA	NA	NA	NA	NA	NA	NA
GSE41367	GSE41367_remanei_soap.expr.txt.gz		anti-conservative	0.96	0.14	2192	39834	1894	NA	NA	NA	NA	NA	NA	NA
GSE43143	GSE43143_tooth_FPKM_DE.txt.gz-set-0		anti-conservative	0.71	0.74	142	1930	1083	NA	NA	NA	NA	NA	NA	NA
GSE43189	GSE43189_processed_h99_rim101.csv.gz		anti-conservative	0.81	0.43	223	3412	1013	NA	NA	NA	NA	NA	NA	NA
GSE44402	GSE44402_QW_Table_S2-AS_targets_of_PQBP1_identified_from_RNA-seq.xlsx.gz		anti-conservative	0.97	0.18	58	1074	38	NA	NA	NA	NA	NA	NA	NA
GSE48671	GSE48671_all.GeneDiffExp.txt.gz-set-1		anti-conservative	1.00	0.15	687	13046	12	NA	NA	NA	NA	NA	NA	NA
GSE48812	GSE48812_24h_PRECvsLNCAP.diff.txt.gz-set-2		anti-conservative	0.86	0.00	449	7304	1430	NA	NA	NA	NA	NA	NA	NA
GSE48812	GSE48812_6h_LNCAPvsPC3.diff.txt.gz-set-2		anti-conservative	0.85	0.00	440	7129	1432	NA	NA	NA	NA	NA	NA	NA
GSE48812	GSE48812_6h_PRECvsLNCAP.diff.txt.gz-set-2		anti-conservative	0.85	0.00	388	6250	1322	NA	NA	NA	NA	NA	NA	NA
GSE49587	GSE49587_ORvSmn_DEUtable.txt.gz		anti-conservative	0.80	0.97	79	1193	386	NA	NA	NA	NA	NA	NA	NA
GSE50198	GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-1		anti-conservative	0.47	0.43	516	4614	11018		anti-conservative	0.98	0.12	120	2235	42
GSE50198	GSE50198_Tet1kd_vs_v6.5_DEXSeq_results.txt.gz		anti-conservative	0.07	0.80	288	407	67970	NA	NA	NA	NA	NA	NA	NA
GSE50198	GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-1		anti-conservative	0.31	0.61	235	1407	9730		anti-conservative	0.87	0.22	94	1557	256
GSE50198	GSE50198_Tet2kd_vs_v6.5_DEXSeq_results.txt.gz		anti-conservative	0.07	0.81	273	379	65576	NA	NA	NA	NA	NA	NA	NA
GSE50535	GSE50535_diffexp_1.txt.gz-set-0		anti-conservative	0.65	0.45	451	5579	4575	NA	NA	NA	NA	NA	NA	NA
GSE50535	GSE50535_diffexp_1.txt.gz-set-1		anti-conservative	0.64	0.49	414	5067	4344	NA	NA	NA	NA	NA	NA	NA
GSE50535	GSE50535_diffexp_2.txt.gz		anti-conservative	0.65	0.46	549	6731	5735	NA	NA	NA	NA	NA	NA	NA
GSE50535	GSE50535_diffexp_3.txt.gz-set-0		anti-conservative	0.66	0.52	525	6618	5044	NA	NA	NA	NA	NA	NA	NA
GSE50535	GSE50535_diffexp_3.txt.gz-set-1		anti-conservative	0.96	0.28	1130	20628	872	NA	NA	NA	NA	NA	NA	NA
GSE50708	GSE50708_DE_result.txt.gz		anti-conservative	0.96	0.32	449	8157	401	NA	NA	NA	NA	NA	NA	NA
GSE51037	GSE51037_Untreated_Nitrate_Processed_CunninghamBussel.xlsx.gz		anti-conservative	0.74	0.96	6	87	41	NA	NA	NA	NA	NA	NA	NA
GSE51645	GSE51645_DE_processed_data.txt.gz		anti-conservative	0.36	0.68	36	248	1199	NA	NA	NA	NA	NA	NA	NA
GSE54440	GSE54440_WT_Z2_RNAseq_rep2.txt.gz		anti-conservative	0.61	0.40	192	2231	2309	NA	NA	NA	NA	NA	NA	NA
GSE55528	GSE55528_gene_exp_PA.diff.gz		anti-conservative	0.94	0.64	100	1785	118	NA	NA	NA	NA	NA	NA	NA
GSE55528	GSE55528_gene_exp_SA.diff.gz		anti-conservative	0.88	0.81	24	403	60	NA	NA	NA	NA	NA	NA	NA
GSE57217	GSE57217_bck1wt_geneexp_diff.txt.gz		anti-conservative	0.48	0.80	37	336	751	NA	NA	NA	NA	NA	NA	NA
GSE57217	GSE57217_mkk2wt_geneexp_diff.txt.gz		anti-conservative	0.72	0.90	28	389	205	NA	NA	NA	NA	NA	NA	NA
GSE57217	GSE57217_mpk1wt_geneexp_diff.txt.gz		anti-conservative	0.31	0.79	26	151	1085	NA	NA	NA	NA	NA	NA	NA
GSE57397	GSE57397_degexp.KO-REC-REP1-RNA.vs.KO-HS-REP1-RNA.output_score.txt.gz		anti-conservative	0.65	0.71	536	6576	5596	NA	NA	NA	NA	NA	NA	NA
GSE57397	GSE57397_degexp.KO-REC-REP2-RNA.vs.KO-HS-REP2-RNA.output_score.txt.gz		anti-conservative	0.31	0.37	572	3394	23911	NA	NA	NA	NA	NA	NA	NA
GSE57397	GSE57397_degexp.WT-REC-REP1-RNA.vs.WT-HS-REP1-RNA.output_score.txt.gz		anti-conservative	0.32	0.28	663	4006	26974	NA	NA	NA	NA	NA	NA	NA
GSE57397	GSE57397_degexp.WT-REC-REP2-RNA.vs.WT-HS-REP2-RNA.output_score.txt.gz		anti-conservative	0.32	0.37	589	3618	23462	NA	NA	NA	NA	NA	NA	NA
GSE57482	GSE57482_output_score.txt.gz		anti-conservative	0.49	0.41	548	5103	10808	NA	NA	NA	NA	NA	NA	NA
GSE58052	GSE58052_N.europaea_co-culture_over_single-culture.txt.gz		anti-conservative	0.55	0.63	28	287	430	NA	NA	NA	NA	NA	NA	NA
GSE58053	GSE58053_25mm-over-0mm.txt.gz		anti-conservative	0.38	0.54	29	208	907	NA	NA	NA	NA	NA	NA	NA
GSE58053	GSE58053_25mm-over-1mm.txt.gz		anti-conservative	0.19	0.62	13	46	990	NA	NA	NA	NA	NA	NA	NA
GSE58495	GSE58495_diffexp_LSK.txt.gz-set-0		anti-conservative	0.32	0.56	172	1045	6930	NA	NA	NA	NA	NA	NA	NA
GSE58495	GSE58495_diffexp_LSK.txt.gz-set-1		anti-conservative	0.73	0.71	257	3574	1802	NA	NA	NA	NA	NA	NA	NA
GSE59571	GSE59571_S13113_genesdiff.xlsx		anti-conservative	0.67	0.68	298	3794	2775	NA	NA	NA	NA	NA	NA	NA
GSE59715	GSE59715_finalHiCRNAseqTable.csv.gz		anti-conservative	0.51	0.79	111	1072	2066		anti-conservative	0.61	0.23	59	682	707
GSE59814	GSE59814_processed_data.txt.gz		anti-conservative	0.33	0.62	71	437	2780	NA	NA	NA	NA	NA	NA	NA
GSE59980	GSE59980_RNA-seq_598-SKD.txt.gz-set-1		anti-conservative	0.47	0.43	813	7295	17235	NA	NA	NA	NA	NA	NA	NA
GSE60191	GSE60191_RNA_halflives.xlsx.gz-sheet-Tabelle1		anti-conservative	0.20	0.18	370	1408	27995	NA	NA	NA	NA	NA	NA	NA
GSE60968	GSE60968_VEC_vs_CRE_DE.txt.gz		anti-conservative	0.89	0.36	399	6776	912	NA	NA	NA	NA	NA	NA	NA
GSE62785	GSE62785_Table_S2_Genes_differentially_expressed_in_hns_mutant_in_early_stationary_phase.xls.gz-sheet-status = ok		anti-conservative	0.52	0.69	28	273	481	NA	NA	NA	NA	NA	NA	NA
GSE63224	GSE63224_All_unigene_expression.txt.gz-set-5		anti-conservative	0.97	0.97	192	3527	129	NA	NA	NA	NA	NA	NA	NA
GSE63510	GSE63510_ko_vs_wt_fold_changes_p_values.txt.gz		anti-conservative	0.47	0.58	408	3665	8616		anti-conservative	0.90	0.19	76	1296	163
GSE63707	GSE63707_DEXSeqResults_AretIR_03d_vs_IFMWT_03d.txt.gz		anti-conservative	0.09	0.92	12	20	2292	NA	NA	NA	NA	NA	NA	NA
GSE63707	GSE63707_DEXSeqResults_AretIR_03d_vs_salm_ko.txt.gz		anti-conservative	0.10	0.63	60	117	9989	NA	NA	NA	NA	NA	NA	NA
GSE63707	GSE63707_DEXSeqResults_AretIR_30h_vs_IFMWT_30h.txt.gz		anti-conservative	0.02	0.79	5	1	6196	NA	NA	NA	NA	NA	NA	NA
GSE63707	GSE63707_DEXSeqResults_AretIR_72h_vs_IFMWT_72h.txt.gz		anti-conservative	0.01	0.79	4	1	6147	NA	NA	NA	NA	NA	NA	NA
GSE63707	GSE63707_DEXSeqResults_salm_ko_vs_IFMWT_03d.txt.gz		anti-conservative	0.28	0.92	35	184	1723	NA	NA	NA	NA	NA	NA	NA
GSE63948	GSE63948_Supplemental_Table2_DeepSeq_Fanourgakis_etAl.xls.gz-sheet-long 3’UTR transcripts(>1500nt)		anti-conservative	0.25	0.89	6	31	360	NA	NA	NA	NA	NA	NA	NA
GSE64513	GSE64513_FOXD3_vs_Control_gene_exp_diff_anno.txt.gz		anti-conservative	0.55	0.51	174	1820	2676	NA	NA	NA	NA	NA	NA	NA
GSE65973	GSE65973_NLS_deseq2_all_alluniq_vs_mmu9htdp43nls.txt.gz		anti-conservative	0.71	0.31	273	3686	2110		anti-conservative	0.83	0.34	71	1130	272
GSE66793	GSE66793_cmp1-3-geo-gene.tsv.gz		anti-conservative	0.03	0.81	5	3	2544	NA	NA	NA	NA	NA	NA	NA
GSE66822	GSE66822_PRMT5-vs-WT_SC-mrna_counts.txt.gz		anti-conservative	0.21	0.83	38	150	2671		anti-conservative	0.26	0.74	8	38	423
GSE67334	GSE67334_TFH.Vs.TH1.DESeq_Analysis_DE_Genes.txt.gz		anti-conservative	0.46	0.70	109	956	2443		anti-conservative	0.57	0.46	42	452	599
GSE67756	GSE67756_LA2A-vs-LC2A.compare.txt.gz		anti-conservative	0.79	0.34	1509	22680	7587	NA	NA	NA	NA	NA	NA	NA
GSE67756	GSE67756_LB2A-vs-LA2A.compare.txt.gz		anti-conservative	0.80	0.41	1391	21088	6686	NA	NA	NA	NA	NA	NA	NA
GSE67756	GSE67756_LB2A-vs-LC2A.compare.txt.gz		anti-conservative	0.73	0.54	973	13485	6859	NA	NA	NA	NA	NA	NA	NA
GSE67756	GSE67756_LB2A-vs-LF1A.compare.txt.gz		anti-conservative	0.68	0.37	1268	16356	11406	NA	NA	NA	NA	NA	NA	NA
GSE67834	GSE67834_DESeq2_genes_diffexp_by_fc_mTECs_vs_sp-DCs.csv.gz		anti-conservative	0.90	0.23	956	16395	1952		anti-conservative	0.99	0.10	98	1862	10
GSE67834	GSE67834_DESeq2_genes_diffexp_by_fc_mTECs_vs_t-DCs.csv.gz		anti-conservative	0.94	0.24	936	16770	1079	NA	NA	NA	NA	NA	NA	NA
GSE67834	GSE67834_DESeq2_genes_diffexp_by_fc_sp-DCs_vs_mTECs.csv.gz		anti-conservative	0.90	0.23	956	16395	1952		anti-conservative	0.99	0.10	98	1862	10
GSE67834	GSE67834_DESeq2_genes_diffexp_by_fc_t-DCs_vs_mTECs.csv.gz		anti-conservative	0.94	0.24	936	16770	1079	NA	NA	NA	NA	NA	NA	NA
GSE68998	GSE68998_DiffExpDeseq2_mdx2_NOut_3.6.14.csv.gz		anti-conservative	0.28	0.66	152	815	7328		anti-conservative	0.72	0.37	33	452	252
GSE69001	GSE69001_DE_list_planktonic_v_biolfim.txt.gz		anti-conservative	0.88	0.44	95	1600	236	NA	NA	NA	NA	NA	NA	NA
GSE69001	GSE69001_DE_list_plate_v_biofilm.txt.gz		anti-conservative	0.98	0.42	108	2024	36	NA	NA	NA	NA	NA	NA	NA
GSE69110	GSE69110_d2GFP_vs_d2Sox9OE.deseq.res.csv.gz		anti-conservative	0.45	0.60	225	1931	5169		anti-conservative	0.89	0.26	67	1130	150
GSE71185	GSE71185_CHD8_CRISPR_RNASeq_Cuffdiff_PolyA.txt.gz		anti-conservative	0.65	0.32	221	2744	2239	NA	NA	NA	NA	NA	NA	NA
GSE71185	GSE71185_CHD8_Knockdown_RNASeq_Cuffdiff_PolyA.txt.gz		anti-conservative	0.51	0.43	142	1365	2620	NA	NA	NA	NA	NA	NA	NA
GSE71185	GSE71185_NSD3_Knockdown_RNASeq_Cuffdiff_NSR.txt.gz		anti-conservative	0.04	0.83	3	2	1578	NA	NA	NA	NA	NA	NA	NA
GSE71185	GSE71185_NSD3_Knockdown_RNASeq_Cuffdiff_PolyA.txt.gz		anti-conservative	0.38	0.74	40	290	1225	NA	NA	NA	NA	NA	NA	NA
GSE71539	GSE71539_TP0vsTP23_gene_results.txt.gz		anti-conservative	0.04	0.80	5	4	2092	NA	NA	NA	NA	NA	NA	NA
GSE71539	GSE71539_TP0vsTP23_tag_results.txt.gz		anti-conservative	0.07	0.80	25	35	5811	NA	NA	NA	NA	NA	NA	NA
GSE71710	GSE71710_siDGCR8_v_siSCR_DESeq_gencode.all.symbol.txt.gz		anti-conservative	0.15	0.76	24	67	2590		anti-conservative	0.14	0.74	5	12	555
GSE71862	GSE71862_DeSeq2_MCF7_vs_MCF10A_foldchange.txt.gz		anti-conservative	0.75	0.38	419	5957	2669		anti-conservative	0.73	0.33	59	812	416
GSE71902	GSE71902_WILD-vs-CPH2.txt.gz		anti-conservative	0.01	0.78	0	0	1330	NA	NA	NA	NA	NA	NA	NA
GSE72491	GSE72491_PCBP2_KO_v_WT_DESeq_gencode.all.name.txt.gz		anti-conservative	0.36	0.64	104	701	3584		anti-conservative	0.44	0.63	17	144	413
GSE73376	GSE73376_full_list_edgeR_annotated_DGCR8.txt.gz		anti-conservative	0.24	0.73	70	317	4276	NA	NA	NA	NA	NA	NA	NA
GSE73376	GSE73376_full_list_edgeR_annotated_RRP6.txt.gz		anti-conservative	0.10	0.71	32	60	5482	NA	NA	NA	NA	NA	NA	NA
GSE74103	GSE74103_Tobacco_FS_v_WT_DESeq_refGene.all.annotated.txt.gz		anti-conservative	0.56	0.55	593	6329	8796		anti-conservative	0.77	0.50	30	436	164
GSE74103	GSE74103_Tobacco_G1_v_WT_DESeq_refGene.all.annotated.txt.gz		anti-conservative	0.74	0.32	1190	16801	7832		anti-conservative	0.93	0.18	58	1025	88
GSE74103	GSE74103_Tobacco_GS_v_WT_DESeq_refGene.all.annotated.txt.gz		anti-conservative	0.91	0.22	1679	29066	3110	NA	NA	NA	NA	NA	NA	NA
GSE75147	GSE75147_regulated.phf5a_kd_402.down.G166.list.txt.gz		anti-conservative	0.97	0.02	86	1592	49	NA	NA	NA	NA	NA	NA	NA
GSE75147	GSE75147_regulated.phf5a_kd_861.down.0827.list.txt.gz		anti-conservative	0.98	0.03	139	2575	65	NA	NA	NA	NA	NA	NA	NA
GSE75147	GSE75147_regulated.phf5a_kd_861.down.G166.list.txt.gz		anti-conservative	0.99	0.04	285	5340	80	NA	NA	NA	NA	NA	NA	NA
GSE75510	GSE75510_diffExonExprZH1vsB6.txt.gz		anti-conservative	0.04	0.97	1	1	390	NA	NA	NA	NA	NA	NA	NA
GSE75510	GSE75510_diffExonExprZH3vsB6.txt.gz		anti-conservative	0.00	0.95	0	0	887	NA	NA	NA	NA	NA	NA	NA
GSE75731	GSE75731_ckvsd119a_gene_exp_diff.txt.gz		anti-conservative	0.83	0.47	62	969	246	NA	NA	NA	NA	NA	NA	NA
GSE75731	GSE75731_ckvsdrug_gene_exp_diff.txt.gz		anti-conservative	0.96	0.72	38	690	31	NA	NA	NA	NA	NA	NA	NA
GSE75731	GSE75731_ckvsv149a_gene_exp_diff.txt.gz		anti-conservative	0.95	0.82	24	441	23	NA	NA	NA	NA	NA	NA	NA
GSE75962	GSE75962_control_vs_H2O2.DEseq.txt.gz		anti-conservative	0.89	0.92	62	1042	143		anti-conservative	0.21	0.62	12	46	833
GSE77025	GSE77025_gene_exp.diff.gz		anti-conservative	1.00	0.44	1266	23953	110	NA	NA	NA	NA	NA	NA	NA
GSE77044	GSE77044_comparison2.xls.gz		anti-conservative	0.14	0.58	25	64	3008		anti-conservative	0.26	0.60	8	37	414
GSE79039	GSE79039_Feske_Tcon_DKO_vs_WT_norm_counts_DE_expression_all.txt.gz		anti-conservative	0.66	0.59	166	2072	1663		anti-conservative	0.78	0.30	86	1264	470
GSE79039	GSE79039_Feske_Tfh_DKO_vs_WT_norm_counts_DE_expression_all.txt.gz		anti-conservative	0.53	0.67	108	1085	1821		anti-conservative	0.69	0.45	60	787	527
GSE79143	GSE79143_SNPCountsTable.txt.gz		anti-conservative	0.75	0.42	554	7861	3560	NA	NA	NA	NA	NA	NA	NA
GSE79830	GSE79830_Sp2_Wdr70del_vs_Sp1_Wt.Differential_analysis_results.txt.gz		anti-conservative	0.58	0.84	32	357	443	NA	NA	NA	NA	NA	NA	NA
GSE80135	GSE80135_Lipo_siProx_SC_results.csv.gz		anti-conservative	0.04	0.87	3	2	1746		anti-conservative	0.09	0.72	3	4	499
GSE80135	GSE80135_siNeg_siProx_sig_results.csv.gz		anti-conservative	0.27	0.65	68	352	3515		anti-conservative	0.64	0.37	40	486	440
GSE80264	GSE80264_Group_2_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-3		anti-conservative	0.42	0.49	36	286	951	NA	NA	NA	NA	NA	NA	NA
GSE80264	GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-1		anti-conservative	0.97	0.02	168	3087	106	NA	NA	NA	NA	NA	NA	NA
GSE80264	GSE80264_Group_3_vs._Group_1_Ensembl.gene.rpkm_more0.5_log2p1_qn.txt.gz-set-3		anti-conservative	0.45	0.47	42	355	984	NA	NA	NA	NA	NA	NA	NA
GSE80348	GSE80348_20160316_6h_wt_vs_mu.xlsx		anti-conservative	0.49	0.56	432	4037	8452	NA	NA	NA	NA	NA	NA	NA
GSE80354	GSE80354_Gata6_DEseq2_res.csv.gz		anti-conservative	0.34	0.92	33	216	1195		anti-conservative	0.20	0.88	2	6	133
GSE81128	GSE81128_DESeq2_Results.txt.gz		anti-conservative	0.86	0.18	588	9608	1829		anti-conservative	0.98	0.09	92	1721	32
GSE81237	GSE81237_DE_RNAseqseq_analysis_DESeq_TTP-AAvsGFP.csv.gz		anti-conservative	0.49	0.57	146	1344	2926		anti-conservative	0.51	0.48	33	323	611
GSE81237	GSE81237_DE_RNAseqseq_analysis_DESeq_TTP-AAvsTTP.csv.gz		anti-conservative	0.64	0.48	234	2854	2464		anti-conservative	0.67	0.35	55	704	512
GSE81237	GSE81237_DE_RNAseqseq_analysis_DESeq_TTPvsGFP.csv.gz		anti-conservative	0.31	0.67	65	382	2734		anti-conservative	0.28	0.61	14	73	684
GSE81913	GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-4-5-2016_gran_v_iRed.csv		anti-conservative	0.55	0.57	343	3584	5322		anti-conservative	0.74	0.33	46	645	299
GSE81913	GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-Up		anti-conservative	0.01	0.67	133	18	345558	NA	NA	NA	NA	NA	NA	NA
GSE81913	GSE81913_iRed_over_disGran_foldchange.xlsx.gz-sheet-Down		anti-conservative	0.51	0.50	215	2071	3949		anti-conservative	0.68	0.37	39	499	348
GSE83134	GSE83134_RYBPfl.DESeq2.Output.txt.gz-set-0		anti-conservative	0.19	0.94	13	46	1064		anti-conservative	0.09	0.98	0	1	57
GSE83218	GSE83218_HSC.txt.gz		anti-conservative	0.02	0.80	2	1	1923		anti-conservative	0.03	0.60	2	1	1091
GSE83541	GSE83541_All_Genes_ZnfTG_Muscle_DESeq2_38.txt.gz		anti-conservative	0.33	0.76	67	426	2552		anti-conservative	0.28	0.68	3	18	168
GSE83736	GSE83736_DESeq2.Vav.KO.C_vs_Vav.WT.C.txt.gz		anti-conservative	0.44	0.49	451	3801	10728		anti-conservative	0.92	0.25	72	1261	124
GSE83736	GSE83736_DESeq2.Vav.WTvsKO.StimulatedInteractions.txt.gz		anti-conservative	0.72	0.71	423	5812	3065		anti-conservative	0.90	0.25	72	1231	150
GSE84737	GSE84737_All_genes_unfiltered_DE.txt.gz		anti-conservative	0.72	0.36	339	4644	2478	NA	NA	NA	NA	NA	NA	NA
GSE84737	GSE84737_Genes_filtered_DE.txt.gz		anti-conservative	0.70	0.38	234	3140	1864	NA	NA	NA	NA	NA	NA	NA
GSE85329	GSE85329_IGF_project_IGF_results.txt.gz		anti-conservative	0.32	0.75	110	672	4409		anti-conservative	0.57	0.43	38	416	538
GSE85385	GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-H3WT_DMSO_x_K27M_DMSO		anti-conservative	0.69	0.77	346	4554	2921	NA	NA	NA	NA	NA	NA	NA
GSE85385	GSE85385_RNA-seq_Mouse_Cell_Lines.xlsx-sheet-H3WT_DMSO_x_H3WT_EPZ		anti-conservative	0.68	0.85	207	2690	1815	NA	NA	NA	NA	NA	NA	NA
GSE85627	GSE85627_mDUX-mESC.xlsx.gz-sheet-Unsorted		anti-conservative	0.62	0.50	480	5677	5533		anti-conservative	0.97	0.09	89	1645	47
GSE85627	GSE85627_mDUX-mESC.xlsx.gz-sheet-Sorted		anti-conservative	0.67	0.46	554	7025	5244		anti-conservative	0.96	0.11	103	1884	71
GSE86054	GSE86054_gene_expression.txt.gz		anti-conservative	0.55	0.95	22	230	343		anti-conservative	0.71	0.91	6	80	46
GSE87167	GSE87167_all_genes.txt.gz		anti-conservative	0.89	0.33	1168	19813	2665	NA	NA	NA	NA	NA	NA	NA
GSE87448	GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-2		anti-conservative	0.98	0.21	181	3373	66	NA	NA	NA	NA	NA	NA	NA
GSE87448	GSE87448_AKT_vs_CTRL_at_2fold-p005-4433_genes.txt.gz-set-3		anti-conservative	0.98	0.11	204	3772	98	NA	NA	NA	NA	NA	NA	NA
GSE87448	GSE87448_KRAS_vs_CTRL_at_2fold-p005-4238_genes.txt.gz-set-3		anti-conservative	0.99	0.09	200	3748	49	NA	NA	NA	NA	NA	NA	NA
GSE87495	GSE87495_results_dds_gencode22.csv.gz		anti-conservative	0.91	0.30	566	9760	1096		anti-conservative	0.99	0.11	86	1615	20
GSE87706	GSE87706_SM_vs_RODI.txt.gz		anti-conservative	0.84	0.20	105	1688	367		anti-conservative	0.99	0.08	43	818	7
GSE89238	GSE89238_SET2_KO_DESeq2_output.txt.gz		anti-conservative	0.09	0.77	21	37	3848		anti-conservative	0.35	0.59	9	63	328
GSE89773	GSE89773_combined_expression_table.txt.gz-set-0		anti-conservative	0.82	0.36	188	2921	801	NA	NA	NA	NA	NA	NA	NA
GSE89773	GSE89773_combined_expression_table.txt.gz-set-1		anti-conservative	0.77	0.47	146	2122	840		anti-conservative	0.93	0.21	66	1172	88
GSE90615	GSE90615_DifferentialExpression.xlsx-sheet-Vehicle_12dP-MI_vs_Pre-MI		anti-conservative	0.68	0.39	333	4287	3020	NA	NA	NA	NA	NA	NA	NA
GSE90615	GSE90615_DifferentialExpression.xlsx-sheet-Sfrp2_12dP-MI_vs_Pre-MI		anti-conservative	0.77	0.35	399	5824	2291	NA	NA	NA	NA	NA	NA	NA
GSE90615	GSE90615_DifferentialExpression.xlsx-sheet-1dP-MI_vs_Pre-MI		anti-conservative	0.11	0.67	29	61	4500	NA	NA	NA	NA	NA	NA	NA
GSE90712	GSE90712_Thy1_positive_E_Cad_positive_vs_Thy1_positive_E_Cad_negative.DESeq2_Results.tsv.gz		anti-conservative	0.72	0.59	348	4750	2602		anti-conservative	0.84	0.27	78	1233	288
GSE90889	GSE90889_geo_hiPSC-RPE_Vehicle_vs_NAM.xlsx		anti-conservative	0.22	0.73	75	317	4950		anti-conservative	0.59	0.64	22	249	297
GSE90977	GSE90977_RNA_seq_COMPLETE_4_4_SETS_DEFINITIVE.xlsx.gz-sheet-120 dpi		anti-conservative	0.64	0.45	294	3592	3098		anti-conservative	0.90	0.38	65	1115	141
GSE90977	GSE90977_RNA_seq_COMPLETE_4_4_SETS_DEFINITIVE.xlsx.gz-sheet-180 dpi		anti-conservative	0.22	0.75	47	198	3117		anti-conservative	0.28	0.79	8	41	367
GSE92506	GSE92506_DEseq2_wholeTable.txt.gz		anti-conservative	0.53	0.57	288	2909	4814		anti-conservative	0.76	0.31	55	795	333
GSE93547	GSE93547_LMvsWTM_cleaned_deseq2.csv.gz		anti-conservative	0.74	0.44	112	1588	738		anti-conservative	0.92	0.27	44	773	78
GSE93684	GSE93684_S1-1A-vs-R1-1A.compare.txt.gz		anti-conservative	0.91	0.24	3155	54738	5712	NA	NA	NA	NA	NA	NA	NA
GSE93827	GSE93827_LMP1_2a_vs_GFP.txt.gz		anti-conservative	0.77	0.44	373	5438	2141		anti-conservative	0.95	0.23	72	1306	74
GSE93877	GSE93877_NB4_RNASeq_ATRA.txt.gz		anti-conservative	0.21	0.78	30	119	2214		anti-conservative	0.32	0.71	12	74	510
GSE93877	GSE93877_NB4_RNASeq_DMSO.txt.gz		anti-conservative	0.27	0.96	7	36	363		anti-conservative	0.19	0.93	2	7	153
GSE95108	GSE95108_DEtest_wo_wt1.xlsx-sheet-DEtest		anti-conservative	0.05	0.95	7	7	2442	NA	NA	NA	NA	NA	NA	NA
GSE96626	GSE96626_DE_TrtVsVeh.xlsx		anti-conservative	0.22	0.89	16	66	1043		anti-conservative	0.37	0.94	3	19	86
GSE96999	GSE96999_DESeq2_miseq_output.txt.gz		anti-conservative	0.95	0.26	257	4634	266		anti-conservative	0.95	0.17	64	1155	70
GSE96999	GSE96999_DESeq2_nextseq_output.txt.gz		anti-conservative	0.67	0.40	146	1856	1361	NA	NA	NA	NA	NA	NA	NA
GSE97060	GSE97060_122KOMouse_SleuthOutput.txt.gz		anti-conservative	0.29	0.50	231	1257	10937	NA	NA	NA	NA	NA	NA	NA
GSE97421	GSE97421_GFP_RFP.txt.gz		anti-conservative	0.84	0.69	314	5009	1130		anti-conservative	0.89	0.26	59	1007	136
GSE97421	GSE97421_GFP_Whole.txt.gz		anti-conservative	0.83	0.29	707	11194	2680	NA	NA	NA	NA	NA	NA	NA
GSE98526	GSE98526_A12_vs_UA159T5.txt.gz		anti-conservative	0.63	0.53	31	369	340	NA	NA	NA	NA	NA	NA	NA
GSE98526	GSE98526_A1_vs_UA159T5.txt.gz		anti-conservative	0.80	0.85	13	193	58	NA	NA	NA	NA	NA	NA	NA
GSE99944	GSE99944_Digo_expression_SD-T50nM_SD-Ctrl.csv.gz		anti-conservative	0.65	0.47	352	4346	3617		anti-conservative	0.86	0.23	63	1036	197
GSE40218	GSE40218_processed_DESeq.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.15	0.79	3	8	292
GSE41766	GSE41766_PRE1-Ox_IBH1-Ox_vs_IBH1-Ox.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.98	0.27	56	1032	26
GSE44233	GSE44233_processed_data.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.06	0.63	2	3	662
GSE46046	GSE46046_GenesTable.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.74	0.95	3	40	19
GSE46066	GSE46066_ICRFVsDMSO.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.13	0.64	6	16	838
GSE50198	GSE50198_Tet1kd_vs_v6.5_DESeq_results.txt.gz-set-0	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.88	0.29	88	1470	221
GSE50198	GSE50198_Tet2kd_vs_v6.5_DESeq_results.txt.gz-set-0	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.41	0.51	27	212	753
GSE54846	GSE54846_130529.DESeq.120813.combined-htseq-Luc123-m1_123.HGNC.protein_coding.rsgt20.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.75	0.40	53	750	336
GSE56346	GSE56346_wtNplus_vs_wtNminus_DESeq_output.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.96	0.19	89	1635	64
GSE58865	GSE58865_Hyphae_vs_Oidia_DESeq_results.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.96	0.01	58	1060	45
GSE58910	GSE58910_SenescentAstrocytesDEanalysis_v2.csv.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.47	0.66	10	86	209
GSE61031	GSE61031_DE_polyaWT_vs_polyaKO.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.19	0.72	7	25	578
GSE61033	GSE61033_DE_exonWT_vs_exonKOnoRN.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.36	0.60	20	140	691
GSE61033	GSE61033_DE_intronWT_vs_intronKOnoRN.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.33	0.85	7	47	281
GSE61336	GSE61336_results_167_vs_WTL.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.75	0.34	28	397	178
GSE61336	GSE61336_results_167_vs_WTZ.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.84	0.36	30	471	106
GSE61954	GSE61954_all_genes_expression_values_supp_table.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.40	0.44	29	218	822
GSE63091	GSE63091_diffana_DESeq_GFP-4A3-Y14_MLN51-UPF1.Ensembl65.tsv.gz-set-0	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.21	0.96	1	3	56
GSE63836	GSE63836_C15Dx_versus_Untr.DESeq.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.83	0.35	70	1101	270
GSE63836	GSE63836_Dx_versus_C15Dx.DESeq.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.33	0.82	8	51	312
GSE65328	GSE65328_A17_6V.tab.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.06	0.89	1	1	219
GSE65487	GSE65487_deseq.rminus_rplus.ensembl.csv.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.89	0.26	91	1539	224
GSE65487	GSE65487_deseq.rplus_gplus.ensembl.csv.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.98	0.15	116	2149	55
GSE67646	GSE67646_DESeq_1.10.1.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.94	0.18	82	1464	103
GSE67834	GSE67834_DESeq2_genes_diffexp_by_fc_sp-DCs_vs_t-DCs.csv.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.94	0.16	88	1579	99
GSE67834	GSE67834_DESeq2_genes_diffexp_by_fc_t-DCs_vs_sp-DCs.csv.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.94	0.16	88	1579	99
GSE69311	GSE69311_deseq_diff_genes.csv.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.11	0.67	2	5	352
GSE70141	GSE70141_Ax2_0H_1+2_ChdC_0H_1+2_DESeq.results.genenames.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.79	0.25	37	554	189
GSE70141	GSE70141_Ax2_10H_1_2_ChdC_12H_1_2_DESeq.results.genenames.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.98	0.08	94	1750	38
GSE72390	GSE72390_DiffExpr_Location_7-12_vs_1-6_Oncorhynchus_keta_de_novo.xlsx	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.47	0.74	9	76	186
GSE72860	GSE72860_RNA-seq_log2fdc.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.49	0.61	22	206	442
GSE74920	GSE74920_SupplementalTable1.xlsx.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.91	0.29	66	1138	118
GSE74920	GSE74920_SupplementalTable3.xlsx.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.73	0.38	43	592	303
GSE74993	GSE74993_SupplementalTables.xlsx-sheet-Table S1	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.91	0.29	66	1138	118
GSE74993	GSE74993_SupplementalTables.xlsx-sheet-Table S3	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.73	0.38	43	592	303
GSE75833	GSE75833_DESeq-processed_FB.control_vs_BR.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.98	0.08	46	855	18
GSE76257	GSE76257_O-VG_OGS2.csv.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.96	0.11	35	643	29
GSE77351	GSE77351_Farshchian.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.31	0.83	6	35	255
GSE77901	GSE77901_SLNCR1_vs_vector.deseq.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.03	0.54	2	1	1509
GSE77901	GSE77901_SLNCR1cons_vs_vector.deseq.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.01	0.86	0	0	472
GSE77901	GSE77901_SLNCR1deltacons_vs_vector.deseq.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.61	0.53	50	581	613
GSE77902	GSE77902_WM1976_siRNA1_vs_control.deseq.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.09	0.69	5	9	965
GSE78240	GSE78240_DESeq_Output.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.69	0.60	33	432	281
GSE78967	GSE78967_Deseq_Analysis.xlsx	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.83	0.36	61	958	231
GSE79633	GSE79633_DESeq2_out_FO_GFP_vs_WT.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.31	0.70	11	67	472
GSE79723	GSE79723_DEseq_LG1401-LG437-LG8736_LG1405-LG435-LG8737_DEG_list.csv.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.57	0.90	5	53	72
GSE79822	GSE79822_Deseq_totalRNA.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	1.00	0.59	10	183	0
GSE80128	GSE80128_P035_DESeq_KO-WT_pathway.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.20	0.82	3	12	224
GSE80135	GSE80135_Lipo_siProx_sig_results.csv.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.22	0.62	8	35	571
GSE80135	GSE80135_siNeg_Lipo_results.csv.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.18	0.73	5	17	436
GSE80135	GSE80135_siNeg_siProx_SC_results.csv.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.13	0.62	5	12	642
GSE81043	GSE81043_sh109_final_unique_DESeq_InfFixed_DiffExp.xlsx.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.99	0.11	98	1847	19
GSE81059	GSE81059_cns-control_vs_head-control.csv.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.99	0.09	85	1596	13
GSE81593	GSE81593_1.Mcf10A_p53delVec_and_p53delHras.xlsx	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.85	0.26	56	902	194
GSE81593	GSE81593_2.Mcf10A_Vec_and_Hras.xlsx	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.49	0.62	17	160	339
GSE81865	GSE81865_RNAseq_uninjured-14dpi.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.79	0.37	29	432	147
GSE85328	GSE85328_Leukaemia_MLL-AF9_RingKO.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.23	0.66	15	64	926
GSE85565	GSE85565_Result_Table.csv.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.67	0.47	30	385	279
GSE85847	GSE85847_matrix_rnaseq_GEO_submission_jsantos20160817.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.73	0.52	40	548	286
GSE86521	GSE86521_DESeq_out_KO_vs_WT.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.52	0.69	21	206	367
GSE87808	GSE87808_diffExp_Slc7a5_Cerebellum_allGenes.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.14	0.82	3	7	320
GSE89004	GSE89004_ppGpp0_vs_H78_differential_all.xls.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.95	0.16	43	785	39
GSE93313	GSE93313_DESeq_2Dvs3D.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.78	0.34	73	1083	380
GSE93313	GSE93313_DESeq_2DvsTranswell.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.88	0.26	92	1536	241
GSE93313	GSE93313_DESeq_3DvsTranswell.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.59	0.41	50	556	666
GSE93748	GSE93748_shTAZ_in_DU145_proceeded_data.xlsx	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.06	0.85	1	1	340
GSE93870	GSE93870_processed_file.xlsx-sheet-293FT_ZIKV.Vs.293FT_Control.DES	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.19	0.79	5	18	432
GSE93870	GSE93870_processed_file.xlsx-sheet-CHME_ZIKV.Vs.CHME_Control.DESeq	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.15	0.68	6	18	675
GSE93870	GSE93870_processed_file.xlsx-sheet-THP1_ZIKV.Vs.THP1_Control.DESeq	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.69	0.40	48	634	404
GSE94280	GSE94280_DESeq2_results_Y_vs_O.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.93	0.28	67	1182	99
GSE94587	GSE94587_DESEQ_Female_WT_vs_Female_del.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.38	0.83	6	43	180
GSE94587	GSE94587_DESEQ_Male_WT_vs_Female_WT.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.67	0.54	28	365	261
GSE94587	GSE94587_DESEQ_Male_WT_vs_Male_del.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.56	0.80	10	109	152
GSE95337	GSE95337_DESeq_EH_Control.vs.dKO.res.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.90	0.36	78	1326	168
GSE97395	GSE97395_Treat_vs_control_diff.txt.gz	NA	NA	NA	NA	NA	NA	NA		anti-conservative	0.50	0.45	33	313	610